Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS03280

Experiment: biofilm; Day2; NLDM;

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS03270 and LRK54_RS03275 are separated by 17 nucleotidesLRK54_RS03275 and LRK54_RS03280 are separated by 9 nucleotidesLRK54_RS03280 and LRK54_RS03285 overlap by 4 nucleotides LRK54_RS03270: LRK54_RS03270 - ribosome recycling factor, at 703,893 to 704,450 _RS03270 LRK54_RS03275: LRK54_RS03275 - polyprenyl diphosphate synthase, at 704,468 to 705,208 _RS03275 LRK54_RS03280: LRK54_RS03280 - phosphatidate cytidylyltransferase, at 705,218 to 706,042 _RS03280 LRK54_RS03285: LRK54_RS03285 - 1-deoxy-D-xylulose-5-phosphate reductoisomerase, at 706,039 to 707,214 _RS03285 Position (kb) 705 706 707Strain fitness (log2 ratio) -1 0 1at 705.206 kb on + strandat 705.206 kb on + strandat 705.206 kb on + strandat 705.206 kb on + strandat 705.206 kb on + strandat 705.206 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction biofilm; Day2; NLDM;
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705,206 + +0.5
705,206 + +1.4
705,206 + -0.0
705,206 + +0.7
705,206 + -0.4
705,206 + -1.0

Or see this region's nucleotide sequence