Experiment: planktonic; Day2; NLDM; Aluminum chloride 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS03295 and LRK54_RS03300 are separated by 131 nucleotides LRK54_RS03300 and LRK54_RS03305 overlap by 8 nucleotides LRK54_RS03305 and LRK54_RS03310 overlap by 4 nucleotides
LRK54_RS03295: LRK54_RS03295 - outer membrane protein assembly factor BamA, at 708,790 to 711,210
_RS03295
LRK54_RS03300: LRK54_RS03300 - UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase, at 711,342 to 712,370
_RS03300
LRK54_RS03305: LRK54_RS03305 - 3-hydroxyacyl-ACP dehydratase FabZ, at 712,363 to 712,836
_RS03305
LRK54_RS03310: LRK54_RS03310 - acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase, at 712,833 to 713,606
_RS03310
Position (kb) 711
712
713 Strain fitness (log2 ratio) -1
0
1
2 at 711.312 kb on + strand at 711.312 kb on + strand at 711.312 kb on + strand at 711.312 kb on + strand at 711.313 kb on - strand at 711.313 kb on - strand at 711.313 kb on - strand at 711.313 kb on - strand at 711.313 kb on - strand at 711.313 kb on - strand at 711.313 kb on - strand at 711.313 kb on - strand at 711.313 kb on - strand at 711.313 kb on - strand at 711.313 kb on - strand at 711.313 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day2; NLDM; Aluminum chloride 1mM remove 711,312 + -0.6 711,312 + -0.4 711,312 + -0.1 711,312 + +1.5 711,313 - -1.2 711,313 - +1.6 711,313 - +0.9 711,313 - -0.4 711,313 - +2.0 711,313 - -0.3 711,313 - +0.3 711,313 - -1.1 711,313 - +0.3 711,313 - -1.4 711,313 - -0.8 711,313 - -0.9
Or see this region's nucleotide sequence