Experiment: planktonic; Day2; NLDM;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS03070 and LRK54_RS03075 are separated by 1 nucleotides LRK54_RS03075 and LRK54_RS03080 are separated by 74 nucleotides LRK54_RS03080 and LRK54_RS03085 are separated by 153 nucleotides
LRK54_RS03070: LRK54_RS03070 - 2-dehydropantoate 2-reductase, at 661,622 to 662,542
_RS03070
LRK54_RS03075: LRK54_RS03075 - acyltransferase, at 662,544 to 663,458
_RS03075
LRK54_RS03080: LRK54_RS03080 - cysteine desulfurase, at 663,533 to 664,777
_RS03080
LRK54_RS03085: LRK54_RS03085 - Fe-S cluster assembly protein SufD, at 664,931 to 666,250
_RS03085
Position (kb) 663
664
665 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 662.536 kb on + strand at 662.536 kb on + strand at 662.536 kb on + strand at 662.536 kb on + strand at 662.536 kb on + strand at 662.536 kb on + strand at 662.536 kb on + strand at 662.536 kb on + strand at 662.536 kb on + strand at 662.536 kb on + strand at 662.536 kb on + strand at 662.536 kb on + strand at 662.536 kb on + strand at 662.536 kb on + strand at 662.536 kb on + strand at 662.537 kb on - strand at 662.537 kb on - strand at 662.537 kb on - strand at 662.537 kb on - strand at 662.537 kb on - strand at 662.537 kb on - strand at 662.537 kb on - strand at 662.537 kb on - strand at 662.537 kb on - strand at 662.537 kb on - strand at 662.537 kb on - strand at 662.544 kb on + strand at 662.665 kb on + strand, within LRK54_RS03075 at 662.665 kb on + strand, within LRK54_RS03075 at 662.665 kb on + strand, within LRK54_RS03075 at 662.665 kb on + strand, within LRK54_RS03075 at 662.665 kb on + strand, within LRK54_RS03075 at 662.665 kb on + strand, within LRK54_RS03075 at 662.666 kb on - strand, within LRK54_RS03075 at 662.666 kb on - strand, within LRK54_RS03075 at 662.666 kb on - strand, within LRK54_RS03075 at 662.666 kb on - strand, within LRK54_RS03075 at 662.666 kb on - strand, within LRK54_RS03075 at 662.666 kb on - strand, within LRK54_RS03075 at 662.666 kb on - strand, within LRK54_RS03075 at 662.666 kb on - strand, within LRK54_RS03075 at 662.666 kb on - strand, within LRK54_RS03075 at 662.666 kb on - strand, within LRK54_RS03075 at 662.666 kb on - strand, within LRK54_RS03075 at 662.666 kb on - strand, within LRK54_RS03075 at 662.666 kb on - strand, within LRK54_RS03075 at 662.770 kb on + strand, within LRK54_RS03075 at 663.028 kb on + strand, within LRK54_RS03075 at 663.028 kb on + strand, within LRK54_RS03075 at 663.029 kb on - strand, within LRK54_RS03075 at 663.029 kb on - strand, within LRK54_RS03075 at 663.193 kb on + strand, within LRK54_RS03075 at 663.193 kb on + strand, within LRK54_RS03075 at 663.193 kb on + strand, within LRK54_RS03075 at 663.193 kb on + strand, within LRK54_RS03075 at 663.193 kb on + strand, within LRK54_RS03075 at 663.193 kb on + strand, within LRK54_RS03075 at 663.193 kb on + strand, within LRK54_RS03075 at 663.193 kb on + strand, within LRK54_RS03075 at 663.193 kb on + strand, within LRK54_RS03075 at 663.193 kb on + strand, within LRK54_RS03075 at 663.193 kb on + strand, within LRK54_RS03075 at 663.193 kb on + strand, within LRK54_RS03075 at 663.193 kb on + strand, within LRK54_RS03075 at 663.193 kb on + strand, within LRK54_RS03075 at 663.193 kb on + strand, within LRK54_RS03075 at 663.193 kb on + strand, within LRK54_RS03075 at 663.194 kb on - strand, within LRK54_RS03075 at 663.194 kb on - strand, within LRK54_RS03075 at 663.194 kb on - strand, within LRK54_RS03075 at 663.194 kb on - strand, within LRK54_RS03075 at 663.194 kb on - strand, within LRK54_RS03075 at 663.194 kb on - strand, within LRK54_RS03075 at 663.194 kb on - strand, within LRK54_RS03075 at 663.194 kb on - strand, within LRK54_RS03075 at 663.194 kb on - strand, within LRK54_RS03075 at 663.194 kb on - strand, within LRK54_RS03075 at 663.194 kb on - strand, within LRK54_RS03075 at 663.194 kb on - strand, within LRK54_RS03075 at 663.194 kb on - strand, within LRK54_RS03075 at 663.194 kb on - strand, within LRK54_RS03075 at 663.194 kb on - strand, within LRK54_RS03075 at 663.194 kb on - strand, within LRK54_RS03075 at 663.194 kb on - strand, within LRK54_RS03075 at 663.395 kb on + strand at 663.395 kb on + strand at 663.395 kb on + strand at 663.396 kb on - strand at 663.396 kb on - strand at 663.491 kb on + strand at 663.491 kb on + strand at 663.491 kb on + strand at 663.491 kb on + strand at 663.491 kb on + strand at 663.491 kb on + strand at 663.491 kb on + strand at 663.491 kb on + strand at 663.491 kb on + strand at 663.492 kb on - strand at 663.492 kb on - strand at 663.492 kb on - strand at 663.492 kb on - strand at 663.492 kb on - strand at 663.492 kb on - strand at 663.551 kb on + strand at 663.551 kb on + strand at 663.551 kb on + strand at 663.552 kb on - strand at 663.552 kb on - strand at 663.552 kb on - strand at 663.552 kb on - strand at 663.552 kb on - strand at 663.552 kb on - strand at 664.885 kb on + strand at 664.886 kb on - strand at 664.886 kb on - strand at 664.886 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day2; NLDM; remove 662,536 + -0.0 662,536 + +0.9 662,536 + +1.1 662,536 + +0.1 662,536 + -1.0 662,536 + -1.0 662,536 + -1.8 662,536 + -0.7 662,536 + +1.0 662,536 + -0.3 662,536 + -0.4 662,536 + -1.0 662,536 + -0.3 662,536 + +3.1 662,536 + +1.1 662,537 - +0.6 662,537 - +0.1 662,537 - -2.5 662,537 - +1.9 662,537 - -1.0 662,537 - -0.2 662,537 - +0.4 662,537 - -0.8 662,537 - +0.3 662,537 - -0.8 662,537 - +0.7 662,544 + -0.9 662,665 + LRK54_RS03075 0.13 +1.1 662,665 + LRK54_RS03075 0.13 +0.5 662,665 + LRK54_RS03075 0.13 -2.3 662,665 + LRK54_RS03075 0.13 -0.7 662,665 + LRK54_RS03075 0.13 +1.9 662,665 + LRK54_RS03075 0.13 +0.1 662,666 - LRK54_RS03075 0.13 +0.4 662,666 - LRK54_RS03075 0.13 -0.6 662,666 - LRK54_RS03075 0.13 -1.2 662,666 - LRK54_RS03075 0.13 +1.4 662,666 - LRK54_RS03075 0.13 -1.0 662,666 - LRK54_RS03075 0.13 +0.5 662,666 - LRK54_RS03075 0.13 -0.3 662,666 - LRK54_RS03075 0.13 -0.9 662,666 - LRK54_RS03075 0.13 +0.2 662,666 - LRK54_RS03075 0.13 +0.1 662,666 - LRK54_RS03075 0.13 -0.2 662,666 - LRK54_RS03075 0.13 +1.2 662,666 - LRK54_RS03075 0.13 +1.2 662,770 + LRK54_RS03075 0.25 +1.0 663,028 + LRK54_RS03075 0.53 -1.0 663,028 + LRK54_RS03075 0.53 +0.1 663,029 - LRK54_RS03075 0.53 -1.0 663,029 - LRK54_RS03075 0.53 -0.0 663,193 + LRK54_RS03075 0.71 -0.8 663,193 + LRK54_RS03075 0.71 +0.2 663,193 + LRK54_RS03075 0.71 +0.3 663,193 + LRK54_RS03075 0.71 +1.2 663,193 + LRK54_RS03075 0.71 +1.1 663,193 + LRK54_RS03075 0.71 +1.2 663,193 + LRK54_RS03075 0.71 +1.6 663,193 + LRK54_RS03075 0.71 -0.3 663,193 + LRK54_RS03075 0.71 +0.5 663,193 + LRK54_RS03075 0.71 -1.9 663,193 + LRK54_RS03075 0.71 +0.4 663,193 + LRK54_RS03075 0.71 -0.1 663,193 + LRK54_RS03075 0.71 +0.5 663,193 + LRK54_RS03075 0.71 +1.9 663,193 + LRK54_RS03075 0.71 +1.3 663,193 + LRK54_RS03075 0.71 +0.3 663,194 - LRK54_RS03075 0.71 +2.4 663,194 - LRK54_RS03075 0.71 +0.2 663,194 - LRK54_RS03075 0.71 +1.4 663,194 - LRK54_RS03075 0.71 +2.4 663,194 - LRK54_RS03075 0.71 -0.5 663,194 - LRK54_RS03075 0.71 +1.5 663,194 - LRK54_RS03075 0.71 +1.1 663,194 - LRK54_RS03075 0.71 -0.3 663,194 - LRK54_RS03075 0.71 +0.1 663,194 - LRK54_RS03075 0.71 -1.3 663,194 - LRK54_RS03075 0.71 +1.5 663,194 - LRK54_RS03075 0.71 -0.7 663,194 - LRK54_RS03075 0.71 -0.5 663,194 - LRK54_RS03075 0.71 +0.4 663,194 - LRK54_RS03075 0.71 -0.6 663,194 - LRK54_RS03075 0.71 -1.9 663,194 - LRK54_RS03075 0.71 -1.9 663,395 + -0.7 663,395 + -0.3 663,395 + -0.6 663,396 - -0.5 663,396 - -0.7 663,491 + -0.6 663,491 + -0.1 663,491 + -0.7 663,491 + +0.5 663,491 + -0.1 663,491 + +0.8 663,491 + +0.1 663,491 + +0.7 663,491 + +0.1 663,492 - -0.9 663,492 - -0.4 663,492 - -0.5 663,492 - +0.8 663,492 - +0.7 663,492 - +2.0 663,551 + +0.3 663,551 + -1.0 663,551 + -0.5 663,552 - -0.8 663,552 - -0.7 663,552 - -0.8 663,552 - -1.3 663,552 - -0.7 663,552 - -1.6 664,885 + +0.6 664,886 - +1.1 664,886 - +0.7 664,886 - +1.5
Or see this region's nucleotide sequence