Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS16800

Experiment: biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
3,679,834	+		LRK54_RS16790	0.74	-1.5
3,679,834	+		LRK54_RS16790	0.74	-0.7
3,679,834	+		LRK54_RS16790	0.74	-1.7
3,679,834	+		LRK54_RS16790	0.74	+3.6
3,679,835	-		LRK54_RS16790	0.74	-1.3
3,679,835	-		LRK54_RS16790	0.74	+0.6
3,679,836	+		LRK54_RS16790	0.74	+0.8
3,679,836	+		LRK54_RS16790	0.74	+0.5
3,679,836	+		LRK54_RS16790	0.74	-0.5
3,679,836	+		LRK54_RS16790	0.74	+1.0
3,679,837	-		LRK54_RS16790	0.74	-1.6
3,679,837	-		LRK54_RS16790	0.74	+0.0
3,679,837	-		LRK54_RS16790	0.74	+0.1
3,680,019	+		LRK54_RS16790	0.89	+0.7
3,680,019	+		LRK54_RS16790	0.89	-0.7
3,680,020	-		LRK54_RS16790	0.89	+0.4
3,680,020	-		LRK54_RS16790	0.89	+0.4
3,680,020	-		LRK54_RS16790	0.89	-0.9
3,680,065	+				+0.7
3,680,066	-				+0.3
3,680,066	-				-0.7
3,680,066	-				-0.2
3,680,142	+				-1.7
3,680,142	+				-0.9
3,680,142	+				-0.7
3,680,154	+				-0.0
3,680,154	+				-0.5
3,680,154	+				-1.7
3,680,155	-				-0.1
3,680,165	+				-0.2
3,680,165	+				-0.1
3,680,165	+				-0.5
3,680,166	-				-0.7
3,680,166	-				-0.2
3,680,200	+				+0.4
3,680,200	+				-0.4
3,680,200	+				-0.1
3,680,201	-				+0.6
3,680,201	-				+0.3
3,680,201	-				-0.6
3,680,201	-				+3.8
3,680,201	-				-1.1
3,680,232	-				-0.2
3,680,232	-				-1.4
3,680,343	+				-1.1
3,680,343	+				-0.2
3,680,343	+				-0.6
3,680,344	-				+0.4
3,680,344	-				-0.4
3,680,410	+				-0.8
3,680,410	+				+0.1
3,680,410	+				+0.0
3,680,411	-				+0.2
3,680,484	+				+0.7
3,680,485	-				-1.0
3,680,529	+				+0.0
3,680,529	+				+0.8
3,680,529	+				-1.8
3,680,529	+				-0.1
3,680,529	+				-1.1
3,680,529	+				-2.5
3,680,530	-				+0.5
3,680,530	-				-0.7
3,680,530	-				-0.6
3,680,576	+				-1.9
3,680,576	+				-2.5
3,680,577	-				-2.2
3,680,577	-				-1.0
3,680,592	+				+0.1
3,680,597	+				+0.8
3,680,597	+				+0.5
3,680,598	-				+0.7
3,680,598	-				+0.7
3,680,598	-				+0.8
3,680,598	-				+1.1
3,680,611	+				-1.2
3,680,611	+				-0.9
3,680,611	+				+0.0
3,680,611	+				-0.5
3,680,611	+				+2.3
3,680,611	+				+0.0
3,680,611	+				-1.2
3,680,612	-				-0.7
3,680,612	-				+1.0
3,680,612	-				-1.1
3,680,612	-				+1.3
3,680,688	+		LRK54_RS16795	0.36	-2.2
3,680,688	+		LRK54_RS16795	0.36	-1.6
3,680,688	+		LRK54_RS16795	0.36	+1.5
3,680,688	+		LRK54_RS16795	0.36	+1.1
3,680,688	+		LRK54_RS16795	0.36	-0.7
3,680,688	+		LRK54_RS16795	0.36	+0.7
3,680,688	+		LRK54_RS16795	0.36	+0.3
3,680,688	+		LRK54_RS16795	0.36	+3.8
3,680,688	+		LRK54_RS16795	0.36	-0.2
3,680,688	+		LRK54_RS16795	0.36	+2.4
3,680,688	+		LRK54_RS16795	0.36	-0.2
3,680,688	+		LRK54_RS16795	0.36	-0.8
3,680,688	+		LRK54_RS16795	0.36	-0.6
3,680,689	-		LRK54_RS16795	0.36	+1.8
3,680,689	-		LRK54_RS16795	0.36	+1.0
3,680,689	-		LRK54_RS16795	0.36	-0.2
3,680,689	-		LRK54_RS16795	0.36	-0.5
3,680,689	-		LRK54_RS16795	0.36	+0.1
3,680,689	-		LRK54_RS16795	0.36	+1.0
3,680,689	-		LRK54_RS16795	0.36	+0.6
3,680,689	-		LRK54_RS16795	0.36	-1.1
3,680,689	-		LRK54_RS16795	0.36	-2.2
3,680,689	-		LRK54_RS16795	0.36	+1.3
3,680,689	-		LRK54_RS16795	0.36	+0.7
3,680,689	-		LRK54_RS16795	0.36	-1.9
3,680,689	-		LRK54_RS16795	0.36	-0.7
3,680,689	-		LRK54_RS16795	0.36	-2.4
3,680,689	-		LRK54_RS16795	0.36	+0.1
3,680,689	-		LRK54_RS16795	0.36	-1.3
3,680,692	+		LRK54_RS16795	0.38	-0.2
3,680,692	+		LRK54_RS16795	0.38	+0.0
3,680,692	+		LRK54_RS16795	0.38	+0.0
3,680,692	+		LRK54_RS16795	0.38	+0.5
3,680,693	-		LRK54_RS16795	0.38	-2.2
3,680,693	-		LRK54_RS16795	0.38	+0.4
3,680,693	-		LRK54_RS16795	0.38	+1.0
3,680,732	+		LRK54_RS16795	0.56	+1.0
3,680,733	-		LRK54_RS16795	0.56	-1.6
3,680,733	-		LRK54_RS16795	0.56	-2.2
3,681,018	+		LRK54_RS16800	0.69	-1.3
3,681,018	+		LRK54_RS16800	0.69	+0.3
3,681,018	+		LRK54_RS16800	0.69	+0.5
3,681,019	-		LRK54_RS16800	0.69	+0.8
3,681,019	-		LRK54_RS16800	0.69	-1.7
3,681,019	-		LRK54_RS16800	0.69	-1.9
3,681,019	-		LRK54_RS16800	0.69	+1.8
3,681,062	+		LRK54_RS16800	0.85	-0.8
3,681,062	+		LRK54_RS16800	0.85	-1.6
3,681,062	+		LRK54_RS16800	0.85	-3.3
3,681,063	-		LRK54_RS16800	0.85	-0.2
3,681,182	+		LRK54_RS16805	0.30	-1.4
3,681,182	+		LRK54_RS16805	0.30	+0.8
3,681,182	+		LRK54_RS16805	0.30	-1.3
3,681,182	+		LRK54_RS16805	0.30	-1.0
3,681,182	+		LRK54_RS16805	0.30	-0.4
3,681,182	+		LRK54_RS16805	0.30	+0.2
3,681,182	+		LRK54_RS16805	0.30	+2.8
3,681,182	+		LRK54_RS16805	0.30	-1.7
3,681,182	+		LRK54_RS16805	0.30	-0.7
3,681,182	+		LRK54_RS16805	0.30	+0.4
3,681,182	+		LRK54_RS16805	0.30	+0.1
3,681,182	+		LRK54_RS16805	0.30	+0.5
3,681,183	-		LRK54_RS16805	0.30	+0.3
3,681,183	-		LRK54_RS16805	0.30	-0.6
3,681,183	-		LRK54_RS16805	0.30	-0.2
3,681,183	-		LRK54_RS16805	0.30	-1.8
3,681,183	-		LRK54_RS16805	0.30	-0.2
3,681,183	-		LRK54_RS16805	0.30	+0.5
3,681,183	-		LRK54_RS16805	0.30	+1.0
3,681,183	-		LRK54_RS16805	0.30	+0.8
3,681,183	-		LRK54_RS16805	0.30	+0.8
3,681,183	-		LRK54_RS16805	0.30	+0.6
3,681,183	-		LRK54_RS16805	0.30	+1.6
3,681,183	-		LRK54_RS16805	0.30	-0.4
3,681,183	-		LRK54_RS16805	0.30	-0.9
3,681,183	-		LRK54_RS16805	0.30	-1.1
3,681,183	-		LRK54_RS16805	0.30	-1.9
3,681,255	+		LRK54_RS16805	0.56	+0.3
3,681,255	+		LRK54_RS16805	0.56	-0.6
3,681,255	+		LRK54_RS16805	0.56	-0.2
3,681,255	+		LRK54_RS16805	0.56	-1.1
3,681,255	+		LRK54_RS16805	0.56	+1.8
3,681,256	-		LRK54_RS16805	0.57	+0.1
3,681,256	-		LRK54_RS16805	0.57	+1.4
3,681,256	-		LRK54_RS16805	0.57	+0.7
3,681,256	-		LRK54_RS16805	0.57	-0.2
3,681,256	-		LRK54_RS16805	0.57	-1.8
3,681,256	-		LRK54_RS16805	0.57	-0.8
3,681,343	+		LRK54_RS16805	0.89	+0.4
3,681,344	-		LRK54_RS16805	0.89	+0.6
3,681,473	+		LRK54_RS16810	0.40	-1.2
3,681,473	+		LRK54_RS16810	0.40	-1.6
3,681,474	-		LRK54_RS16810	0.40	+0.4
3,681,474	-		LRK54_RS16810	0.40	-1.4
3,681,474	-		LRK54_RS16810	0.40	+0.2
3,681,758	-		LRK54_RS16815	0.58	-0.4
3,681,805	+		LRK54_RS16815	0.78	-2.0
3,681,805	+		LRK54_RS16815	0.78	-0.3
3,681,805	+		LRK54_RS16815	0.78	-1.1
3,681,805	+		LRK54_RS16815	0.78	+0.4
3,681,853	-				-0.3
3,681,853	-				-2.6
3,681,853	-				+0.8
3,681,853	-				-1.5
3,681,898	-				+0.9
3,682,011	+				-0.9
3,682,075	+				+2.3
3,682,075	+				-0.2
3,682,075	+				-2.4
3,682,076	-				-0.5
3,682,076	-				+0.0
3,682,077	+				-0.2
3,682,078	-				-0.2
3,682,078	-				+0.3
3,682,078	-				+0.3
3,682,093	+				-2.0