Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS10195

Experiment: biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
2,245,046	+		LRK54_RS10190	0.83	+1.2
2,245,046	+		LRK54_RS10190	0.83	-1.2
2,245,046	+		LRK54_RS10190	0.83	+1.3
2,245,046	+		LRK54_RS10190	0.83	-1.2
2,245,046	+		LRK54_RS10190	0.83	+1.9
2,245,046	+		LRK54_RS10190	0.83	+1.3
2,245,046	+		LRK54_RS10190	0.83	-1.9
2,245,046	+		LRK54_RS10190	0.83	-0.5
2,245,046	+		LRK54_RS10190	0.83	-1.3
2,245,046	+		LRK54_RS10190	0.83	-1.6
2,245,046	+		LRK54_RS10190	0.83	-1.0
2,245,046	+		LRK54_RS10190	0.83	+0.2
2,245,046	+		LRK54_RS10190	0.83	+2.9
2,245,046	+		LRK54_RS10190	0.83	-0.3
2,245,046	+		LRK54_RS10190	0.83	-0.4
2,245,046	+		LRK54_RS10190	0.83	+0.4
2,245,046	+		LRK54_RS10190	0.83	-0.9
2,245,046	+		LRK54_RS10190	0.83	-1.5
2,245,046	+		LRK54_RS10190	0.83	-1.3
2,245,046	+		LRK54_RS10190	0.83	+0.0
2,245,046	+		LRK54_RS10190	0.83	+2.4
2,245,047	-		LRK54_RS10190	0.83	-0.5
2,245,047	-		LRK54_RS10190	0.83	+0.5
2,245,047	-		LRK54_RS10190	0.83	-0.4
2,245,047	-		LRK54_RS10190	0.83	+0.1
2,245,047	-		LRK54_RS10190	0.83	+0.8
2,245,047	-		LRK54_RS10190	0.83	-1.5
2,245,047	-		LRK54_RS10190	0.83	+0.3
2,245,047	-		LRK54_RS10190	0.83	+3.9
2,245,047	-		LRK54_RS10190	0.83	+0.6
2,245,047	-		LRK54_RS10190	0.83	+0.1
2,245,047	-		LRK54_RS10190	0.83	-2.1
2,245,047	-		LRK54_RS10190	0.83	+2.9
2,245,047	-		LRK54_RS10190	0.83	-1.1
2,245,047	-		LRK54_RS10190	0.83	+3.4
2,245,337	+				-0.9
2,245,337	+				-0.5
2,245,337	+				-1.3
2,245,338	-				-0.1
2,245,338	-				+1.1
2,245,338	-				-1.3
2,245,338	-				-1.1
2,245,338	-				+1.5
2,245,338	-				+0.6
2,245,338	-				-0.2
2,245,338	-				-0.0
2,245,338	-				-1.5
2,245,535	+				-0.7
2,245,535	+				+0.5
2,245,536	-				-0.7
2,245,536	-				-0.7
2,245,536	-				+2.9
2,245,656	+				-0.5
2,245,656	+				-1.3
2,245,656	+				-1.0
2,245,656	+				-0.5
2,245,656	+				+0.7
2,245,656	+				-0.5
2,245,656	+				-0.4
2,245,656	+				-1.0
2,245,656	+				-2.3
2,245,656	+				+0.2
2,245,656	+				-0.7
2,245,656	+				-2.0
2,245,657	-				-0.8
2,245,657	-				-1.7
2,245,657	-				+0.3
2,245,657	-				+1.7
2,245,657	-				+0.1
2,245,657	-				+0.6
2,245,657	-				-1.5
2,245,657	-				+2.3
2,245,657	-				-0.5
2,245,657	-				+0.3
2,245,657	-				-0.9
2,245,657	-				+1.6
2,245,657	-				-0.2
2,245,657	-				-0.9
2,245,657	-				+1.1
2,245,657	-				+1.7
2,245,657	-				-1.0
2,245,657	-				-1.1
2,245,706	+				-0.7
2,245,706	+				-0.7
2,245,706	+				-0.6
2,245,706	+				-0.5
2,245,706	+				-1.1
2,245,707	-				-0.8
2,245,707	-				-0.4
2,245,707	-				-2.6
2,245,707	-				+0.7
2,245,707	-				-1.1
2,245,776	+				+1.4
2,245,776	+				-0.8
2,245,777	-				+2.9
2,245,777	-				-1.7
2,245,777	-				+1.3
2,245,777	-				-0.1
2,245,848	+				-1.0
2,245,848	+				-0.0
2,245,848	+				-0.7
2,245,848	+				-0.4
2,245,848	+				-1.1
2,245,848	+				+1.9
2,245,848	+				+0.0
2,245,848	+				-0.0
2,245,848	+				-1.1
2,245,848	+				-0.8
2,245,848	+				-0.0
2,245,848	+				-1.0
2,245,848	+				+1.0
2,245,848	+				+1.9
2,245,848	+				-1.5
2,245,848	+				-0.5
2,245,849	-				+1.5
2,245,849	-				-1.8
2,245,849	-				-0.6
2,245,849	-				+2.9
2,245,849	-				-0.7
2,245,849	-				+0.9
2,245,849	-				-0.6
2,245,849	-				-2.5
2,245,849	-				-2.5
2,245,849	-				-2.6
2,245,849	-				-1.7
2,245,849	-				-1.4
2,245,849	-				-1.6
2,245,849	-				-1.9
2,245,849	-				-1.2
2,245,929	+				-0.6
2,245,929	+				+0.2
2,245,929	+				-0.7
2,245,929	+				-0.1
2,245,929	+				+0.2
2,245,929	+				+0.4
2,245,929	+				-0.7
2,245,929	+				-0.8
2,245,929	+				-1.1
2,245,929	+				-0.1
2,245,929	+				-0.0
2,245,930	-				+0.5
2,245,930	-				-0.9
2,245,930	-				-2.0
2,245,930	-				+1.7
2,245,930	-				-1.7
2,245,930	-				-1.3
2,245,930	-				-1.5
2,245,930	-				-1.5
2,245,933	+				+0.7
2,245,933	+				-0.6
2,245,933	+				+0.7
2,245,933	+				+1.0
2,245,933	+				-2.6
2,245,933	+				-0.9
2,245,933	+				-1.2
2,245,933	+				-1.4
2,245,933	+				+0.1
2,245,933	+				+0.5
2,245,933	+				-0.3
2,245,933	+				-0.7
2,245,933	+				-0.7
2,245,933	+				+0.1
2,245,933	+				-1.4
2,245,933	+				-1.0
2,245,933	+				-0.8
2,245,933	+				-0.2
2,245,934	-				-0.5
2,245,934	-				-2.1
2,245,934	-				-0.3
2,245,934	-				+0.2
2,245,934	-				+0.1
2,245,934	-				-1.4
2,245,934	-				+0.9
2,245,934	-				-1.9
2,245,934	-				+0.7
2,245,934	-				+0.3
2,245,934	-				+0.8
2,245,934	-				-1.5
2,245,945	+				+0.2
2,245,945	+				-1.3
2,245,945	+				+2.4
2,245,946	-				-2.2
2,245,946	-				-1.2
2,245,981	+		LRK54_RS10195	0.16	-1.7
2,246,126	+				-0.3
2,246,126	+				-1.0
2,246,126	+				-1.5
2,246,126	+				-1.2
2,246,126	+				+0.8
2,246,126	+				-0.1
2,246,126	+				+1.3
2,246,126	+				-1.8
2,246,126	+				+1.7
2,246,126	+				-1.5
2,246,126	+				-1.2
2,246,126	+				+1.0
2,246,126	+				-1.2
2,246,126	+				+2.0
2,246,126	+				-0.3
2,246,126	-				-1.0
2,246,127	-				+1.0
2,246,127	-				-1.4
2,246,127	-				-1.1
2,246,127	-				-0.0
2,246,127	-				-1.3
2,246,127	-				-1.0
2,246,127	-				+1.3
2,246,127	-				+1.4
2,246,127	-				-0.5
2,246,127	-				-1.9
2,246,127	-				-0.2
2,246,127	-				+0.3
2,246,127	-				+1.5
2,246,127	-				-3.2
2,246,127	-				-1.8
2,246,633	-		LRK54_RS10200	0.16	+0.8
2,246,725	+		LRK54_RS10200	0.19	-0.3
2,246,726	-		LRK54_RS10200	0.19	+1.1
2,246,726	-		LRK54_RS10200	0.19	-1.6
2,246,860	+		LRK54_RS10200	0.24	-1.4
2,246,861	-		LRK54_RS10200	0.24	+0.7
2,246,861	-		LRK54_RS10200	0.24	+0.9
2,246,861	-		LRK54_RS10200	0.24	-0.7
2,246,861	-		LRK54_RS10200	0.24	-0.5
2,247,103	+		LRK54_RS10200	0.33	-1.2
2,247,103	+		LRK54_RS10200	0.33	-0.8
2,247,104	-		LRK54_RS10200	0.33	-2.0
2,247,104	-		LRK54_RS10200	0.33	-1.3
2,247,104	-		LRK54_RS10200	0.33	+2.5
2,247,104	-		LRK54_RS10200	0.33	+0.0
2,247,104	-		LRK54_RS10200	0.33	-1.5