Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS07495

Experiment: biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
1,615,569	+				-0.5
1,615,570	-				-0.3
1,615,570	-				+1.8
1,615,570	-				-0.6
1,615,570	-				+0.7
1,615,570	-				+0.3
1,615,575	+				+0.1
1,615,641	+				-1.0
1,615,641	+				-1.1
1,615,641	+				+0.4
1,615,641	+				-1.9
1,615,641	+				+0.2
1,615,641	+				+0.6
1,615,641	+				-0.5
1,615,641	+				-0.6
1,615,641	+				-1.9
1,615,641	+				+0.7
1,615,641	+				-2.0
1,615,641	+				-2.0
1,615,641	+				+1.2
1,615,641	+				-0.3
1,615,642	-				+1.0
1,615,642	-				-0.8
1,615,642	-				+2.2
1,615,642	-				-0.7
1,615,642	-				-0.0
1,615,642	-				-0.4
1,615,642	-				-0.2
1,615,642	-				-0.8
1,615,642	-				-0.8
1,615,642	-				-1.1
1,615,642	-				-0.4
1,615,642	-				+1.0
1,615,642	-				-1.2
1,615,642	-				-1.4
1,615,647	+				+0.5
1,615,826	+				+1.2
1,615,826	+				+0.8
1,615,826	+				+0.4
1,615,827	-				-1.3
1,615,827	-				+0.0
1,615,827	-				+0.8
1,615,851	+				+0.8
1,615,851	+				-0.0
1,615,851	+				-2.0
1,615,852	-				-0.2
1,615,889	+				-0.3
1,615,890	-				-0.8
1,615,890	-				+1.0
1,615,927	+				-2.0
1,615,927	+				+0.4
1,615,927	+				-2.7
1,615,927	+				+0.2
1,615,927	+				+0.9
1,615,927	+				+0.4
1,615,927	+				+1.3
1,615,927	+				-1.9
1,615,927	+				+0.2
1,615,927	+				-0.9
1,615,927	+				+0.6
1,615,928	-				+0.2
1,615,928	-				+0.1
1,615,928	-				-1.5
1,615,928	-				-1.1
1,615,928	-				-0.2
1,616,067	+				-0.4
1,616,067	+				-0.5
1,616,067	+				+0.8
1,616,067	+				+1.4
1,616,067	+				+0.4
1,616,067	+				+0.6
1,616,067	+				+0.4
1,616,067	+				-0.4
1,616,068	-				+0.2
1,616,068	-				-2.2
1,616,068	-				+1.6
1,616,068	-				+0.6
1,616,068	-				+2.5
1,616,068	-				-1.7
1,616,069	+				+2.0
1,616,069	+				-0.6
1,616,069	+				-0.8
1,616,069	+				-1.3
1,616,069	+				+1.1
1,616,069	+				-2.3
1,616,070	-				-0.4
1,616,070	-				-1.4
1,616,070	-				-0.8
1,616,184	+				+1.3
1,616,184	+				+1.2
1,616,184	+				+1.6
1,616,184	+				+1.2
1,616,184	+				+1.2
1,616,184	+				+0.8
1,616,185	-				-1.2
1,616,185	-				-0.1
1,616,185	-				-0.3
1,616,185	-				-2.2
1,616,185	-				-0.9
1,616,185	-				+0.5
1,616,193	+				-0.1
1,616,193	+				-1.9
1,616,194	-				-1.1
1,616,194	-				-2.1
1,616,194	-				+0.6
1,616,194	-				+0.1
1,616,218	+				-1.2
1,616,218	+				-2.1
1,616,218	+				+0.1
1,616,219	-				-0.9
1,616,219	-				+0.0
1,616,219	-				-1.5
1,616,219	-				+3.4
1,616,219	-				-0.2
1,616,219	-				-0.9
1,616,219	-				-1.2
1,616,219	-				-1.4
1,616,298	+				+0.1
1,616,298	+				-0.1
1,616,298	+				+0.3
1,616,298	+				-0.2
1,616,298	+				-0.9
1,616,298	+				-0.3
1,616,298	+				+0.6
1,616,298	+				-1.3
1,616,298	+				-0.3
1,616,298	+				-2.0
1,616,298	+				-1.7
1,616,298	+				-0.0
1,616,298	+				-0.9
1,616,298	+				+1.0
1,616,298	+				-1.8
1,616,298	+				-0.8
1,616,298	+				+0.3
1,616,298	+				+0.2
1,616,298	+				+0.6
1,616,298	+				+0.6
1,616,298	+				-1.4
1,616,298	+				-1.6
1,616,298	+				-3.0
1,616,298	+				-0.4
1,616,298	+				-1.5
1,616,298	+				-2.4
1,616,298	+				-0.6
1,616,298	+				-0.7
1,616,299	-				-1.1
1,616,299	-				+0.7
1,616,299	-				-1.0
1,616,299	-				-0.6
1,616,299	-				+0.6
1,616,299	-				+0.7
1,616,299	-				-1.1
1,616,299	-				-1.0
1,616,299	-				+0.2
1,616,299	-				+2.6
1,616,299	-				-1.7
1,616,299	-				+0.6
1,616,299	-				+0.1
1,616,299	-				-1.3
1,616,299	-				-0.8
1,616,299	-				-1.0
1,616,299	-				-1.4
1,616,299	-				+0.5
1,616,299	-				-2.8
1,616,299	-				-0.5
1,616,421	+				+2.2
1,616,421	+				-0.6
1,616,451	+		LRK54_RS07495	0.20	-1.3
1,616,451	+		LRK54_RS07495	0.20	+1.0
1,616,451	+		LRK54_RS07495	0.20	+2.8
1,616,451	+		LRK54_RS07495	0.20	+0.6
1,616,451	+		LRK54_RS07495	0.20	-2.0
1,616,451	+		LRK54_RS07495	0.20	+0.3
1,616,451	+		LRK54_RS07495	0.20	+4.0
1,616,451	+		LRK54_RS07495	0.20	-0.1
1,616,451	+		LRK54_RS07495	0.20	+1.4
1,616,451	+		LRK54_RS07495	0.20	-1.6
1,616,452	-		LRK54_RS07495	0.21	-2.4
1,616,452	-		LRK54_RS07495	0.21	-0.8
1,616,452	-		LRK54_RS07495	0.21	+0.8
1,616,452	-		LRK54_RS07495	0.21	+0.7
1,616,452	-		LRK54_RS07495	0.21	+0.2
1,616,452	-		LRK54_RS07495	0.21	+4.0
1,616,452	-		LRK54_RS07495	0.21	-0.1
1,616,490	+		LRK54_RS07495	0.42	-1.9
1,616,490	+		LRK54_RS07495	0.42	-1.0
1,616,491	-		LRK54_RS07495	0.43	+1.4
1,616,523	+		LRK54_RS07495	0.61	-0.6
1,616,589	+				-0.4
1,616,711	+				-0.5
1,616,711	+				+1.6
1,616,711	+				-1.0
1,616,711	+				+0.5
1,616,711	+				+0.3
1,616,712	-				+0.6
1,616,712	-				-1.5
1,616,712	-				-1.6
1,616,712	-				-0.5
1,616,712	-				-1.1
1,616,712	-				+1.9
1,616,712	-				-0.4
1,616,712	-				+1.5
1,616,712	-				-0.5
1,616,779	+				-0.1
1,616,779	+				-0.7
1,616,779	+				+0.8
1,616,779	+				-0.6
1,616,779	+				+1.8
1,616,779	+				+3.3
1,616,779	+				+0.6
1,616,779	+				-0.3
1,616,779	+				-0.8
1,616,779	+				-1.6
1,616,779	+				-0.0
1,616,780	+				+0.5
1,616,780	-				-0.9
1,616,780	-				-1.4
1,616,780	-				-0.4
1,616,780	-				-0.1
1,616,780	-				-1.4
1,616,780	-				-0.1
1,616,780	-				-0.3
1,616,780	-				-0.3
1,616,780	-				-2.2
1,616,780	-				-1.4
1,616,780	-				+0.4
1,616,780	-				+0.4
1,616,780	-				+0.1
1,616,780	-				-0.4
1,616,780	-				-1.9
1,616,811	+				+0.4
1,616,811	+				+0.5
1,616,811	+				+1.3
1,616,811	+				+0.2
1,616,812	-				-0.5
1,616,939	+		LRK54_RS07500	0.18	-1.3
1,616,939	+		LRK54_RS07500	0.18	+0.7
1,616,939	+		LRK54_RS07500	0.18	-1.2
1,616,939	+		LRK54_RS07500	0.18	-0.6
1,616,939	+		LRK54_RS07500	0.18	-0.7
1,616,939	+		LRK54_RS07500	0.18	-1.4
1,616,939	+		LRK54_RS07500	0.18	+0.0
1,616,939	+		LRK54_RS07500	0.18	+0.3
1,616,939	+		LRK54_RS07500	0.18	+0.4
1,616,939	+		LRK54_RS07500	0.18	-0.5
1,616,939	+		LRK54_RS07500	0.18	-1.7
1,616,939	+		LRK54_RS07500	0.18	+1.0
1,616,939	+		LRK54_RS07500	0.18	+0.8
1,616,939	+		LRK54_RS07500	0.18	+0.8
1,616,939	+		LRK54_RS07500	0.18	-0.1
1,616,939	+		LRK54_RS07500	0.18	+1.0
1,616,939	+		LRK54_RS07500	0.18	-1.4
1,616,939	+		LRK54_RS07500	0.18	+2.4
1,616,940	-		LRK54_RS07500	0.18	-2.8
1,616,940	-		LRK54_RS07500	0.18	-0.6
1,616,940	-		LRK54_RS07500	0.18	+1.2
1,616,940	-		LRK54_RS07500	0.18	-0.2
1,616,940	-		LRK54_RS07500	0.18	-0.3
1,616,940	-		LRK54_RS07500	0.18	-0.8
1,616,940	-		LRK54_RS07500	0.18	+1.0
1,616,940	-		LRK54_RS07500	0.18	-0.3
1,616,940	-		LRK54_RS07500	0.18	-0.6
1,616,969	+		LRK54_RS07500	0.23	+1.9
1,616,969	+		LRK54_RS07500	0.23	-1.4
1,616,969	+		LRK54_RS07500	0.23	-0.6
1,616,969	+		LRK54_RS07500	0.23	-0.4
1,616,970	-		LRK54_RS07500	0.23	-1.8
1,616,970	-		LRK54_RS07500	0.23	+0.3
1,617,092	+		LRK54_RS07500	0.44	-0.7
1,617,092	+		LRK54_RS07500	0.44	-1.4
1,617,093	-		LRK54_RS07500	0.44	-0.6
1,617,113	+		LRK54_RS07500	0.48	-0.3
1,617,113	+		LRK54_RS07500	0.48	+0.3
1,617,113	+		LRK54_RS07500	0.48	+0.6
1,617,113	+		LRK54_RS07500	0.48	-1.8
1,617,113	+		LRK54_RS07500	0.48	-1.0
1,617,113	+		LRK54_RS07500	0.48	+1.4
1,617,113	+		LRK54_RS07500	0.48	+0.9
1,617,113	+		LRK54_RS07500	0.48	-1.3
1,617,113	+		LRK54_RS07500	0.48	-0.1
1,617,113	+		LRK54_RS07500	0.48	-1.6
1,617,113	+		LRK54_RS07500	0.48	-2.4
1,617,113	+		LRK54_RS07500	0.48	-0.8
1,617,114	-		LRK54_RS07500	0.48	+1.7
1,617,114	-		LRK54_RS07500	0.48	+0.8
1,617,114	-		LRK54_RS07500	0.48	-1.2
1,617,114	-		LRK54_RS07500	0.48	-0.2
1,617,114	-		LRK54_RS07500	0.48	-0.4
1,617,114	-		LRK54_RS07500	0.48	-0.2
1,617,114	-		LRK54_RS07500	0.48	+0.9
1,617,114	-		LRK54_RS07500	0.48	+1.2
1,617,114	-		LRK54_RS07500	0.48	-0.8
1,617,114	-		LRK54_RS07500	0.48	+1.9
1,617,114	-		LRK54_RS07500	0.48	+0.4
1,617,114	-		LRK54_RS07500	0.48	+0.3
1,617,114	-		LRK54_RS07500	0.48	+0.5
1,617,293	+		LRK54_RS07500	0.79	-1.6
1,617,293	+		LRK54_RS07500	0.79	-0.4
1,617,294	-		LRK54_RS07500	0.79	+1.3
1,617,294	-		LRK54_RS07500	0.79	-0.7
1,617,294	-		LRK54_RS07500	0.79	+1.4
1,617,294	-		LRK54_RS07500	0.79	+1.4
1,617,294	-		LRK54_RS07500	0.79	-2.1
1,617,454	+				-0.7
1,617,454	+				+1.6
1,617,455	-				+0.8