Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS10020

Experiment: planktonic; Day2; NLDM; Aluminum chloride 1mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	planktonic; Day2; NLDM; Aluminum chloride 1mM
2,199,433	+		LRK54_RS10015	0.70	-1.4
2,199,433	+		LRK54_RS10015	0.70	-0.5
2,199,434	-		LRK54_RS10015	0.70	+0.3
2,199,780	+		LRK54_RS10015	0.84	-0.3
2,199,780	+		LRK54_RS10015	0.84	+0.1
2,199,780	+		LRK54_RS10015	0.84	-0.4
2,199,780	+		LRK54_RS10015	0.84	-1.1
2,199,780	+		LRK54_RS10015	0.84	-0.4
2,199,780	+		LRK54_RS10015	0.84	+0.6
2,199,781	-		LRK54_RS10015	0.84	-1.4
2,199,781	-		LRK54_RS10015	0.84	-2.4
2,199,781	-		LRK54_RS10015	0.84	-1.3
2,199,898	+		LRK54_RS10015	0.89	+1.1
2,199,899	-		LRK54_RS10015	0.89	+1.2
2,199,899	-		LRK54_RS10015	0.89	+0.8
2,199,899	-		LRK54_RS10015	0.89	+0.4
2,199,899	-		LRK54_RS10015	0.89	+0.8
2,199,899	-		LRK54_RS10015	0.89	-0.0
2,199,954	-				+1.1
2,200,069	+				+0.7
2,200,069	+				-1.9
2,200,069	+				+0.2
2,200,069	+				-0.6
2,200,069	+				-0.3
2,200,070	-				+0.5
2,200,070	-				-1.7
2,200,141	-				-3.0
2,200,218	+				+0.4
2,200,218	+				-0.7
2,200,218	+				-2.3
2,200,218	+				-1.0
2,200,218	+				-0.0
2,200,218	+				-0.5
2,200,218	+				+1.7
2,200,218	+				-2.0
2,200,218	+				-1.5
2,200,219	-				-0.9
2,200,219	-				-1.3
2,200,219	-				-0.2
2,200,219	-				-1.4
2,200,219	-				-0.4
2,200,219	-				+1.7
2,200,219	-				-0.8
2,200,219	-				+0.3
2,200,219	-				-0.1
2,200,272	+				+0.0
2,200,272	+				+0.7
2,200,272	+				+1.1
2,200,272	+				+1.1
2,200,272	+				-0.4
2,200,272	+				+2.1
2,200,272	+				+1.7
2,200,273	-				+0.4
2,200,273	-				-1.0
2,200,273	-				-1.8
2,200,273	-				-1.0
2,200,482	+				-0.1
2,200,482	+				-1.4
2,200,482	+				-2.0
2,200,482	+				+1.7
2,200,482	+				-0.7
2,200,482	+				-1.0
2,200,482	+				-0.7
2,200,482	+				-1.4
2,200,482	+				-1.7
2,200,482	+				-0.4
2,200,482	+				+1.5
2,200,482	+				+0.4
2,200,482	+				-0.6
2,200,482	+				-1.2
2,200,482	+				-1.9
2,200,482	+				+0.4
2,200,482	+				+2.7
2,200,482	+				-1.2
2,200,482	+				+1.0
2,200,482	+				-2.0
2,200,482	+				-1.1
2,200,482	+				+0.1
2,200,482	+				-0.7
2,200,482	+				+1.6
2,200,482	+				-2.9
2,200,482	+				-0.7
2,200,482	+				-0.2
2,200,482	+				+0.6
2,200,482	+				-0.4
2,200,482	+				+0.3
2,200,482	+				-0.7
2,200,482	+				-1.0
2,200,482	+				+0.4
2,200,482	+				-1.9
2,200,483	-				+0.1
2,200,483	-				+0.4
2,200,483	-				+1.0
2,200,483	-				-0.4
2,200,483	-				+0.6
2,200,483	-				+0.5
2,200,483	-				-0.1
2,200,483	-				-0.5
2,200,483	-				-2.1
2,200,483	-				-0.4
2,200,483	-				+0.4
2,200,483	-				+0.1
2,200,483	-				-0.6
2,200,483	-				+0.5
2,200,483	-				-1.5
2,200,483	-				-2.1
2,200,483	-				+0.9
2,200,483	-				-0.0
2,200,483	-				-0.3
2,200,483	-				+0.7
2,200,483	-				-0.5
2,200,483	-				+0.3
2,200,483	-				+0.8
2,200,483	-				+0.2
2,200,483	-				+0.4
2,200,483	-				+2.0
2,200,483	-				-1.9
2,200,483	-				+1.6
2,200,483	-				-0.7
2,200,483	-				-0.3
2,200,483	-				+0.1
2,200,483	-				-0.2
2,200,483	-				+0.0
2,200,483	-				-0.1
2,200,483	-				+0.3
2,200,483	-				-1.0
2,200,483	-				+2.0
2,200,483	-				+0.1
2,200,506	+				+2.7
2,200,506	+				-1.1
2,200,578	+		LRK54_RS10020	0.11	-1.0
2,200,578	+		LRK54_RS10020	0.11	-2.3
2,200,578	+		LRK54_RS10020	0.11	+0.1
2,200,578	+		LRK54_RS10020	0.11	+0.5
2,200,578	+		LRK54_RS10020	0.11	-1.5
2,200,579	-		LRK54_RS10020	0.11	+0.5
2,200,579	-		LRK54_RS10020	0.11	-0.6
2,200,579	-		LRK54_RS10020	0.11	-1.9
2,200,590	+		LRK54_RS10020	0.11	-2.2
2,200,590	+		LRK54_RS10020	0.11	-0.1
2,200,590	+		LRK54_RS10020	0.11	+0.8
2,200,590	+		LRK54_RS10020	0.11	+0.6
2,200,590	+		LRK54_RS10020	0.11	+0.0
2,200,591	-		LRK54_RS10020	0.11	-1.8
2,200,591	-		LRK54_RS10020	0.11	+0.3
2,200,641	+		LRK54_RS10020	0.13	+0.0
2,200,641	+		LRK54_RS10020	0.13	+0.4
2,200,642	-		LRK54_RS10020	0.13	-1.6
2,200,642	-		LRK54_RS10020	0.13	-0.7
2,200,677	+		LRK54_RS10020	0.15	-0.9
2,200,677	+		LRK54_RS10020	0.15	-0.7
2,200,677	+		LRK54_RS10020	0.15	+0.3
2,200,677	+		LRK54_RS10020	0.15	-1.3
2,200,677	+		LRK54_RS10020	0.15	-1.3
2,200,677	+		LRK54_RS10020	0.15	-0.7
2,200,677	+		LRK54_RS10020	0.15	+1.8
2,200,677	+		LRK54_RS10020	0.15	-0.7
2,200,677	+		LRK54_RS10020	0.15	-0.0
2,200,677	+		LRK54_RS10020	0.15	-0.8
2,200,677	+		LRK54_RS10020	0.15	+0.3
2,200,677	+		LRK54_RS10020	0.15	-1.6
2,200,677	+		LRK54_RS10020	0.15	+0.7
2,200,677	+		LRK54_RS10020	0.15	-1.4
2,200,677	+		LRK54_RS10020	0.15	-2.1
2,200,677	+		LRK54_RS10020	0.15	-1.9
2,200,677	+		LRK54_RS10020	0.15	-0.2
2,200,677	+		LRK54_RS10020	0.15	-0.3
2,200,677	+		LRK54_RS10020	0.15	-1.2
2,200,677	+		LRK54_RS10020	0.15	+2.0
2,200,677	+		LRK54_RS10020	0.15	-0.1
2,200,677	+		LRK54_RS10020	0.15	-0.6
2,200,677	+		LRK54_RS10020	0.15	-0.6
2,200,677	+		LRK54_RS10020	0.15	-2.1
2,200,677	+		LRK54_RS10020	0.15	+3.0
2,200,677	+		LRK54_RS10020	0.15	+0.3
2,200,677	+		LRK54_RS10020	0.15	+0.4
2,200,677	+		LRK54_RS10020	0.15	+0.7
2,200,677	+		LRK54_RS10020	0.15	+0.4
2,200,677	+		LRK54_RS10020	0.15	-1.2
2,200,678	-		LRK54_RS10020	0.15	+0.4
2,200,678	-		LRK54_RS10020	0.15	-0.2
2,200,678	-		LRK54_RS10020	0.15	-1.0
2,200,678	-		LRK54_RS10020	0.15	+0.5
2,200,678	-		LRK54_RS10020	0.15	-0.8
2,200,678	-		LRK54_RS10020	0.15	-0.5
2,200,678	-		LRK54_RS10020	0.15	-2.3
2,200,678	-		LRK54_RS10020	0.15	-1.8
2,200,678	-		LRK54_RS10020	0.15	-0.7
2,200,678	-		LRK54_RS10020	0.15	+1.1
2,200,678	-		LRK54_RS10020	0.15	-0.3
2,200,678	-		LRK54_RS10020	0.15	-0.3
2,200,678	-		LRK54_RS10020	0.15	+0.1
2,200,678	-		LRK54_RS10020	0.15	+2.3
2,200,678	-		LRK54_RS10020	0.15	-0.4
2,200,678	-		LRK54_RS10020	0.15	-2.0
2,200,678	-		LRK54_RS10020	0.15	+0.5
2,200,678	-		LRK54_RS10020	0.15	-0.3
2,200,678	-		LRK54_RS10020	0.15	+0.7
2,200,678	-		LRK54_RS10020	0.15	-0.4
2,200,678	-		LRK54_RS10020	0.15	+0.9
2,200,678	-		LRK54_RS10020	0.15	-0.2
2,200,678	-		LRK54_RS10020	0.15	+0.6
2,200,678	-		LRK54_RS10020	0.15	+0.0
2,200,678	-		LRK54_RS10020	0.15	+1.7
2,200,678	-		LRK54_RS10020	0.15	-1.0
2,200,678	-		LRK54_RS10020	0.15	+1.0
2,200,678	-		LRK54_RS10020	0.15	-1.9
2,200,678	-		LRK54_RS10020	0.15	+3.7
2,200,678	-		LRK54_RS10020	0.15	-0.5
2,200,678	-		LRK54_RS10020	0.15	-0.4
2,200,678	-		LRK54_RS10020	0.15	-0.7
2,200,678	-		LRK54_RS10020	0.15	-0.4
2,200,678	-		LRK54_RS10020	0.15	+0.4
2,200,678	-		LRK54_RS10020	0.15	+1.7
2,200,678	-		LRK54_RS10020	0.15	-0.2
2,200,751	+		LRK54_RS10020	0.17	-0.8
2,200,751	+		LRK54_RS10020	0.17	+0.4
2,200,752	-		LRK54_RS10020	0.17	+1.6
2,200,752	-		LRK54_RS10020	0.17	-1.1
2,200,752	-		LRK54_RS10020	0.17	+0.2
2,200,875	+		LRK54_RS10020	0.22	-0.7
2,200,875	+		LRK54_RS10020	0.22	-0.1
2,200,875	+		LRK54_RS10020	0.22	-2.6
2,200,875	+		LRK54_RS10020	0.22	-1.9
2,200,875	+		LRK54_RS10020	0.22	+0.5
2,200,875	+		LRK54_RS10020	0.22	-0.2
2,200,876	-		LRK54_RS10020	0.22	-0.8
2,200,876	-		LRK54_RS10020	0.22	-1.3
2,200,876	-		LRK54_RS10020	0.22	-0.5
2,200,876	-		LRK54_RS10020	0.22	+0.0
2,200,876	-		LRK54_RS10020	0.22	+0.3
2,200,876	-		LRK54_RS10020	0.22	-0.0
2,200,876	-		LRK54_RS10020	0.22	+0.7
2,200,876	-		LRK54_RS10020	0.22	+1.1
2,200,876	-		LRK54_RS10020	0.22	-3.1
2,200,876	-		LRK54_RS10020	0.22	-0.4
2,201,049	+		LRK54_RS10020	0.29	-2.4
2,201,049	+		LRK54_RS10020	0.29	-0.5
2,201,049	+		LRK54_RS10020	0.29	+0.5
2,201,049	+		LRK54_RS10020	0.29	-0.5
2,201,049	+		LRK54_RS10020	0.29	-0.4
2,201,049	+		LRK54_RS10020	0.29	-0.4
2,201,050	-		LRK54_RS10020	0.29	-0.5
2,201,050	-		LRK54_RS10020	0.29	+0.1
2,201,050	-		LRK54_RS10020	0.29	-2.9
2,201,050	-		LRK54_RS10020	0.29	+0.5
2,201,050	-		LRK54_RS10020	0.29	-1.9
2,201,050	-		LRK54_RS10020	0.29	-1.0
2,201,050	-		LRK54_RS10020	0.29	-1.9
2,201,050	-		LRK54_RS10020	0.29	+2.1
2,201,050	-		LRK54_RS10020	0.29	-2.0
2,201,050	-		LRK54_RS10020	0.29	+0.6
2,201,050	-		LRK54_RS10020	0.29	-0.2
2,201,094	+		LRK54_RS10020	0.30	-0.6
2,201,095	-		LRK54_RS10020	0.30	+0.4
2,201,095	-		LRK54_RS10020	0.30	+0.2
2,201,235	+		LRK54_RS10020	0.36	-1.4
2,201,235	+		LRK54_RS10020	0.36	-0.8
2,201,235	+		LRK54_RS10020	0.36	-1.2
2,201,235	+		LRK54_RS10020	0.36	-1.6
2,201,235	+		LRK54_RS10020	0.36	-0.5
2,201,235	+		LRK54_RS10020	0.36	+0.0
2,201,236	-		LRK54_RS10020	0.36	+0.6
2,201,236	-		LRK54_RS10020	0.36	-0.7
2,201,236	-		LRK54_RS10020	0.36	-1.6
2,201,236	-		LRK54_RS10020	0.36	-0.6
2,201,236	-		LRK54_RS10020	0.36	-0.0
2,201,236	-		LRK54_RS10020	0.36	+1.7
2,201,236	-		LRK54_RS10020	0.36	-2.8
2,201,236	-		LRK54_RS10020	0.36	+2.4
2,201,236	-		LRK54_RS10020	0.36	-0.0
2,201,236	-		LRK54_RS10020	0.36	-1.3
2,201,385	+		LRK54_RS10020	0.41	-0.5
2,201,385	+		LRK54_RS10020	0.41	-1.9
2,201,385	+		LRK54_RS10020	0.41	-1.5
2,201,385	+		LRK54_RS10020	0.41	-0.7
2,201,385	+		LRK54_RS10020	0.41	+0.7
2,201,385	+		LRK54_RS10020	0.41	-0.4
2,201,385	+		LRK54_RS10020	0.41	-0.2
2,201,385	+		LRK54_RS10020	0.41	-0.5
2,201,385	+		LRK54_RS10020	0.41	-0.6
2,201,385	+		LRK54_RS10020	0.41	-0.6
2,201,385	+		LRK54_RS10020	0.41	-1.1
2,201,385	+		LRK54_RS10020	0.41	-0.0
2,201,385	+		LRK54_RS10020	0.41	+4.1
2,201,385	+		LRK54_RS10020	0.41	+0.4
2,201,385	+		LRK54_RS10020	0.41	+0.7
2,201,385	+		LRK54_RS10020	0.41	-0.1
2,201,385	+		LRK54_RS10020	0.41	+0.0
2,201,385	+		LRK54_RS10020	0.41	+0.1
2,201,385	+		LRK54_RS10020	0.41	-0.9
2,201,385	+		LRK54_RS10020	0.41	+0.9
2,201,385	+		LRK54_RS10020	0.41	-0.2
2,201,386	-		LRK54_RS10020	0.41	+0.7
2,201,386	-		LRK54_RS10020	0.41	-1.1
2,201,386	-		LRK54_RS10020	0.41	-2.9
2,201,386	-		LRK54_RS10020	0.41	+0.6
2,201,386	-		LRK54_RS10020	0.41	+0.6
2,201,386	-		LRK54_RS10020	0.41	+0.1
2,201,386	-		LRK54_RS10020	0.41	+0.2
2,201,386	-		LRK54_RS10020	0.41	-3.2
2,201,386	-		LRK54_RS10020	0.41	-0.6
2,201,386	-		LRK54_RS10020	0.41	+1.2
2,201,386	-		LRK54_RS10020	0.41	-1.1
2,201,386	-		LRK54_RS10020	0.41	+0.1
2,201,386	-		LRK54_RS10020	0.41	-1.5
2,201,386	-		LRK54_RS10020	0.41	-0.7
2,201,386	-		LRK54_RS10020	0.41	+0.7
2,201,386	-		LRK54_RS10020	0.41	-2.3
2,201,386	-		LRK54_RS10020	0.41	-2.3
2,201,386	-		LRK54_RS10020	0.41	+0.7
2,201,386	-		LRK54_RS10020	0.41	-2.1
2,201,386	-		LRK54_RS10020	0.41	+1.3
2,201,386	-		LRK54_RS10020	0.41	+1.9
2,201,386	-		LRK54_RS10020	0.41	+0.3
2,201,386	-		LRK54_RS10020	0.41	+0.0
2,201,688	+		LRK54_RS10020	0.53	-1.4
2,201,688	+		LRK54_RS10020	0.53	-0.6
2,201,688	+		LRK54_RS10020	0.53	+0.4
2,201,688	+		LRK54_RS10020	0.53	+0.4
2,201,688	+		LRK54_RS10020	0.53	+0.9
2,201,688	+		LRK54_RS10020	0.53	+0.4
2,201,688	+		LRK54_RS10020	0.53	-0.7
2,201,688	+		LRK54_RS10020	0.53	-2.1
2,201,688	+		LRK54_RS10020	0.53	-2.3
2,201,688	+		LRK54_RS10020	0.53	-0.9
2,201,688	+		LRK54_RS10020	0.53	+0.9
2,201,688	+		LRK54_RS10020	0.53	-0.3
2,201,688	+		LRK54_RS10020	0.53	-0.2
2,201,688	+		LRK54_RS10020	0.53	-1.7
2,201,688	+		LRK54_RS10020	0.53	-0.5
2,201,689	-		LRK54_RS10020	0.53	+1.6
2,201,689	-		LRK54_RS10020	0.53	+0.0
2,201,689	-		LRK54_RS10020	0.53	+0.7
2,201,689	-		LRK54_RS10020	0.53	-0.3
2,201,689	-		LRK54_RS10020	0.53	-0.3
2,201,689	-		LRK54_RS10020	0.53	+0.3
2,201,689	-		LRK54_RS10020	0.53	-1.8
2,201,689	-		LRK54_RS10020	0.53	+0.3
2,201,689	-		LRK54_RS10020	0.53	-2.2
2,201,689	-		LRK54_RS10020	0.53	-0.4
2,201,689	-		LRK54_RS10020	0.53	-1.9
2,201,689	-		LRK54_RS10020	0.53	-0.8
2,201,689	-		LRK54_RS10020	0.53	+1.7
2,201,769	+		LRK54_RS10020	0.56	-0.4
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2,203,609	+		LRK54_RS10025	0.40	-1.1
2,203,609	+		LRK54_RS10025	0.40	+0.3
2,203,609	+		LRK54_RS10025	0.40	-0.4
2,203,610	-		LRK54_RS10025	0.40	-0.7
2,203,610	-		LRK54_RS10025	0.40	-0.2
2,203,610	-		LRK54_RS10025	0.40	+0.4
2,203,610	-		LRK54_RS10025	0.40	-2.2
2,203,610	-		LRK54_RS10025	0.40	+0.0
2,203,610	-		LRK54_RS10025	0.40	+2.5
2,203,610	-		LRK54_RS10025	0.40	-2.0
2,203,610	-		LRK54_RS10025	0.40	-1.2
2,203,610	-		LRK54_RS10025	0.40	+0.7
2,203,610	-		LRK54_RS10025	0.40	-1.4
2,203,610	-		LRK54_RS10025	0.40	+0.9
2,203,610	-		LRK54_RS10025	0.40	-0.4
2,203,610	-		LRK54_RS10025	0.40	-1.2
2,203,610	-		LRK54_RS10025	0.40	-0.0
2,203,610	-		LRK54_RS10025	0.40	-1.9
2,203,610	-		LRK54_RS10025	0.40	-1.6
2,203,610	-		LRK54_RS10025	0.40	-0.7
2,203,610	-		LRK54_RS10025	0.40	+1.4
2,203,610	-		LRK54_RS10025	0.40	+1.1
2,203,610	-		LRK54_RS10025	0.40	+0.1
2,203,619	-		LRK54_RS10025	0.41	-2.4
2,203,726	+		LRK54_RS10025	0.50	-1.4
2,203,726	+		LRK54_RS10025	0.50	-1.3
2,203,726	+		LRK54_RS10025	0.50	+0.1
2,203,726	+		LRK54_RS10025	0.50	+0.0
2,203,726	+		LRK54_RS10025	0.50	-0.6
2,203,727	-		LRK54_RS10025	0.51	-0.3
2,203,727	-		LRK54_RS10025	0.51	-1.8
2,203,727	-		LRK54_RS10025	0.51	+0.8
2,203,727	-		LRK54_RS10025	0.51	+1.4
2,203,727	-		LRK54_RS10025	0.51	-0.8
2,203,727	-		LRK54_RS10025	0.51	+0.2
2,203,825	+		LRK54_RS10025	0.59	-0.8
2,203,825	+		LRK54_RS10025	0.59	-0.2
2,203,825	+		LRK54_RS10025	0.59	+0.1
2,203,825	+		LRK54_RS10025	0.59	+0.8
2,203,826	-		LRK54_RS10025	0.59	+0.4
2,203,826	-		LRK54_RS10025	0.59	-0.1
2,203,826	-		LRK54_RS10025	0.59	-2.0
2,203,826	-		LRK54_RS10025	0.59	-2.1
2,203,826	-		LRK54_RS10025	0.59	-0.6
2,203,826	-		LRK54_RS10025	0.59	+0.2
2,203,826	-		LRK54_RS10025	0.59	+2.7
2,203,826	-		LRK54_RS10025	0.59	-1.0
2,203,826	-		LRK54_RS10025	0.59	-2.3
2,203,891	+		LRK54_RS10025	0.65	+0.2
2,203,891	+		LRK54_RS10025	0.65	+1.9
2,203,891	+		LRK54_RS10025	0.65	+0.1
2,203,892	-		LRK54_RS10025	0.65	-0.6