Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03930

Experiment: D-Tagatose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03928 and MPMX20_03929 overlap by 4 nucleotidesMPMX20_03929 and MPMX20_03930 overlap by 4 nucleotidesMPMX20_03930 and MPMX20_03931 overlap by 4 nucleotidesMPMX20_03931 and MPMX20_03932 are separated by 98 nucleotidesMPMX20_03932 and MPMX20_03933 overlap by 23 nucleotides MPMX20_03928: MPMX20_03928 - hypothetical protein, at 4,134,476 to 4,135,603 _03928 MPMX20_03929: MPMX20_03929 - hypothetical protein, at 4,135,600 to 4,136,307 _03929 MPMX20_03930: MPMX20_03930 - hypothetical protein, at 4,136,304 to 4,136,810 _03930 MPMX20_03931: MPMX20_03931 - hypothetical protein, at 4,136,807 to 4,137,259 _03931 MPMX20_03932: MPMX20_03932 - hypothetical protein, at 4,137,358 to 4,137,555 _03932 MPMX20_03933: MPMX20_03933 - hypothetical protein, at 4,137,533 to 4,138,261 _03933 Position (kb) 4136 4137Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4135.313 kb on - strand, within MPMX20_03928at 4135.329 kb on + strand, within MPMX20_03928at 4135.337 kb on - strand, within MPMX20_03928at 4135.337 kb on - strand, within MPMX20_03928at 4135.337 kb on - strand, within MPMX20_03928at 4135.337 kb on - strand, within MPMX20_03928at 4135.337 kb on - strand, within MPMX20_03928at 4135.388 kb on + strand, within MPMX20_03928at 4135.388 kb on + strand, within MPMX20_03928at 4135.390 kb on - strand, within MPMX20_03928at 4135.396 kb on - strand, within MPMX20_03928at 4135.396 kb on - strand, within MPMX20_03928at 4135.406 kb on - strand, within MPMX20_03928at 4135.437 kb on + strand, within MPMX20_03928at 4135.583 kb on + strandat 4135.588 kb on + strandat 4135.607 kb on - strandat 4135.607 kb on - strandat 4135.618 kb on + strandat 4135.621 kb on - strandat 4135.621 kb on - strandat 4135.652 kb on - strandat 4135.772 kb on + strand, within MPMX20_03929at 4135.853 kb on + strand, within MPMX20_03929at 4135.853 kb on + strand, within MPMX20_03929at 4135.853 kb on + strand, within MPMX20_03929at 4135.861 kb on - strand, within MPMX20_03929at 4135.880 kb on - strand, within MPMX20_03929at 4135.884 kb on + strand, within MPMX20_03929at 4135.892 kb on - strand, within MPMX20_03929at 4135.892 kb on - strand, within MPMX20_03929at 4136.003 kb on - strand, within MPMX20_03929at 4136.097 kb on - strand, within MPMX20_03929at 4136.124 kb on + strand, within MPMX20_03929at 4136.135 kb on + strand, within MPMX20_03929at 4136.243 kb on + strandat 4136.246 kb on - strandat 4136.300 kb on - strandat 4136.336 kb on + strandat 4136.358 kb on + strand, within MPMX20_03930at 4136.368 kb on + strand, within MPMX20_03930at 4136.376 kb on - strand, within MPMX20_03930at 4136.376 kb on - strand, within MPMX20_03930at 4136.447 kb on + strand, within MPMX20_03930at 4136.549 kb on + strand, within MPMX20_03930at 4136.560 kb on - strand, within MPMX20_03930at 4136.637 kb on + strand, within MPMX20_03930at 4136.637 kb on + strand, within MPMX20_03930at 4136.637 kb on + strand, within MPMX20_03930at 4136.637 kb on + strand, within MPMX20_03930at 4136.637 kb on + strand, within MPMX20_03930at 4136.645 kb on - strand, within MPMX20_03930at 4136.645 kb on - strand, within MPMX20_03930at 4136.645 kb on - strand, within MPMX20_03930at 4136.645 kb on - strand, within MPMX20_03930at 4136.645 kb on - strand, within MPMX20_03930at 4136.694 kb on - strand, within MPMX20_03930at 4136.694 kb on - strand, within MPMX20_03930at 4136.754 kb on + strand, within MPMX20_03930at 4136.798 kb on + strandat 4136.857 kb on + strand, within MPMX20_03931at 4136.900 kb on + strand, within MPMX20_03931at 4136.916 kb on + strand, within MPMX20_03931at 4136.934 kb on - strand, within MPMX20_03931at 4136.944 kb on + strand, within MPMX20_03931at 4136.944 kb on + strand, within MPMX20_03931at 4136.948 kb on + strand, within MPMX20_03931at 4136.952 kb on - strand, within MPMX20_03931at 4136.982 kb on + strand, within MPMX20_03931at 4137.057 kb on - strand, within MPMX20_03931at 4137.093 kb on + strand, within MPMX20_03931at 4137.101 kb on - strand, within MPMX20_03931at 4137.127 kb on + strand, within MPMX20_03931at 4137.135 kb on - strand, within MPMX20_03931at 4137.160 kb on - strand, within MPMX20_03931at 4137.187 kb on + strand, within MPMX20_03931at 4137.188 kb on + strand, within MPMX20_03931at 4137.193 kb on + strand, within MPMX20_03931at 4137.193 kb on + strand, within MPMX20_03931at 4137.196 kb on - strand, within MPMX20_03931at 4137.198 kb on + strand, within MPMX20_03931at 4137.201 kb on - strand, within MPMX20_03931at 4137.298 kb on - strandat 4137.300 kb on + strandat 4137.308 kb on - strandat 4137.313 kb on - strandat 4137.331 kb on - strandat 4137.346 kb on - strandat 4137.356 kb on + strandat 4137.356 kb on + strandat 4137.356 kb on + strandat 4137.356 kb on + strandat 4137.356 kb on + strandat 4137.356 kb on + strandat 4137.356 kb on + strandat 4137.364 kb on - strandat 4137.364 kb on - strandat 4137.364 kb on - strandat 4137.364 kb on - strandat 4137.509 kb on + strand, within MPMX20_03932at 4137.514 kb on - strand, within MPMX20_03932at 4137.519 kb on + strand, within MPMX20_03932at 4137.527 kb on - strand, within MPMX20_03932at 4137.527 kb on - strand, within MPMX20_03932at 4137.570 kb on - strandat 4137.584 kb on - strandat 4137.589 kb on + strandat 4137.599 kb on - strandat 4137.609 kb on + strand, within MPMX20_03933at 4137.772 kb on - strand, within MPMX20_03933at 4137.799 kb on + strand, within MPMX20_03933at 4137.805 kb on - strand, within MPMX20_03933at 4137.807 kb on - strand, within MPMX20_03933

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Tagatose (C)
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4,135,313 - MPMX20_03928 0.74 -0.5
4,135,329 + MPMX20_03928 0.76 +1.4
4,135,337 - MPMX20_03928 0.76 +1.1
4,135,337 - MPMX20_03928 0.76 -2.0
4,135,337 - MPMX20_03928 0.76 +0.1
4,135,337 - MPMX20_03928 0.76 -1.9
4,135,337 - MPMX20_03928 0.76 -0.8
4,135,388 + MPMX20_03928 0.81 -0.1
4,135,388 + MPMX20_03928 0.81 +0.4
4,135,390 - MPMX20_03928 0.81 +1.5
4,135,396 - MPMX20_03928 0.82 -0.9
4,135,396 - MPMX20_03928 0.82 +0.2
4,135,406 - MPMX20_03928 0.82 +1.2
4,135,437 + MPMX20_03928 0.85 -1.0
4,135,583 + -0.7
4,135,588 + -0.7
4,135,607 - -1.1
4,135,607 - +1.9
4,135,618 + +0.5
4,135,621 - +3.4
4,135,621 - -0.5
4,135,652 - +2.7
4,135,772 + MPMX20_03929 0.24 -2.9
4,135,853 + MPMX20_03929 0.36 -1.9
4,135,853 + MPMX20_03929 0.36 +0.4
4,135,853 + MPMX20_03929 0.36 +0.2
4,135,861 - MPMX20_03929 0.37 -0.3
4,135,880 - MPMX20_03929 0.40 -0.6
4,135,884 + MPMX20_03929 0.40 -1.3
4,135,892 - MPMX20_03929 0.41 +0.3
4,135,892 - MPMX20_03929 0.41 -2.8
4,136,003 - MPMX20_03929 0.57 +1.5
4,136,097 - MPMX20_03929 0.70 -0.3
4,136,124 + MPMX20_03929 0.74 -0.5
4,136,135 + MPMX20_03929 0.76 -1.7
4,136,243 + -0.1
4,136,246 - -0.3
4,136,300 - +0.5
4,136,336 + -4.4
4,136,358 + MPMX20_03930 0.11 +1.4
4,136,368 + MPMX20_03930 0.13 -1.3
4,136,376 - MPMX20_03930 0.14 -1.0
4,136,376 - MPMX20_03930 0.14 -2.0
4,136,447 + MPMX20_03930 0.28 -1.6
4,136,549 + MPMX20_03930 0.48 -2.2
4,136,560 - MPMX20_03930 0.50 -1.4
4,136,637 + MPMX20_03930 0.66 +0.0
4,136,637 + MPMX20_03930 0.66 -0.4
4,136,637 + MPMX20_03930 0.66 -3.3
4,136,637 + MPMX20_03930 0.66 -0.9
4,136,637 + MPMX20_03930 0.66 -0.3
4,136,645 - MPMX20_03930 0.67 -1.9
4,136,645 - MPMX20_03930 0.67 -0.8
4,136,645 - MPMX20_03930 0.67 -0.1
4,136,645 - MPMX20_03930 0.67 -1.9
4,136,645 - MPMX20_03930 0.67 -1.9
4,136,694 - MPMX20_03930 0.77 -1.4
4,136,694 - MPMX20_03930 0.77 -0.3
4,136,754 + MPMX20_03930 0.89 -2.9
4,136,798 + +0.2
4,136,857 + MPMX20_03931 0.11 +0.8
4,136,900 + MPMX20_03931 0.21 -1.7
4,136,916 + MPMX20_03931 0.24 +0.1
4,136,934 - MPMX20_03931 0.28 -0.1
4,136,944 + MPMX20_03931 0.30 +0.4
4,136,944 + MPMX20_03931 0.30 -2.7
4,136,948 + MPMX20_03931 0.31 +0.9
4,136,952 - MPMX20_03931 0.32 +0.1
4,136,982 + MPMX20_03931 0.39 +0.1
4,137,057 - MPMX20_03931 0.55 -1.7
4,137,093 + MPMX20_03931 0.63 -1.6
4,137,101 - MPMX20_03931 0.65 +0.8
4,137,127 + MPMX20_03931 0.71 +2.2
4,137,135 - MPMX20_03931 0.72 -2.7
4,137,160 - MPMX20_03931 0.78 +1.6
4,137,187 + MPMX20_03931 0.84 -2.7
4,137,188 + MPMX20_03931 0.84 -3.0
4,137,193 + MPMX20_03931 0.85 -0.2
4,137,193 + MPMX20_03931 0.85 -0.8
4,137,196 - MPMX20_03931 0.86 +0.9
4,137,198 + MPMX20_03931 0.86 -0.7
4,137,201 - MPMX20_03931 0.87 -0.7
4,137,298 - -0.2
4,137,300 + +1.0
4,137,308 - +2.0
4,137,313 - -0.5
4,137,331 - +1.3
4,137,346 - -2.1
4,137,356 + +0.4
4,137,356 + -1.3
4,137,356 + -0.5
4,137,356 + -1.6
4,137,356 + -0.6
4,137,356 + +2.5
4,137,356 + +1.2
4,137,364 - -0.1
4,137,364 - +2.1
4,137,364 - +0.9
4,137,364 - -1.2
4,137,509 + MPMX20_03932 0.76 +0.0
4,137,514 - MPMX20_03932 0.79 +0.2
4,137,519 + MPMX20_03932 0.81 -2.9
4,137,527 - MPMX20_03932 0.85 -0.8
4,137,527 - MPMX20_03932 0.85 -0.7
4,137,570 - +0.5
4,137,584 - -2.7
4,137,589 + -3.1
4,137,599 - +2.5
4,137,609 + MPMX20_03933 0.10 -2.4
4,137,772 - MPMX20_03933 0.33 -3.1
4,137,799 + MPMX20_03933 0.36 +0.9
4,137,805 - MPMX20_03933 0.37 -3.2
4,137,807 - MPMX20_03933 0.38 +0.5

Or see this region's nucleotide sequence