Experiment: D-Tagatose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02104 and MPMX20_02105 are separated by 36 nucleotides MPMX20_02105 and MPMX20_02106 are separated by 310 nucleotides MPMX20_02106 and MPMX20_02107 are separated by 379 nucleotides MPMX20_02107 and MPMX20_02108 are separated by 2 nucleotides
MPMX20_02104: MPMX20_02104 - hypothetical protein, at 2,199,401 to 2,199,811
_02104
MPMX20_02105: MPMX20_02105 - hypothetical protein, at 2,199,848 to 2,199,952
_02105
MPMX20_02106: MPMX20_02106 - hypothetical protein, at 2,200,263 to 2,200,574
_02106
MPMX20_02107: MPMX20_02107 - hypothetical protein, at 2,200,954 to 2,201,283
_02107
MPMX20_02108: MPMX20_02108 - hypothetical protein, at 2,201,286 to 2,201,951
_02108
Position (kb)
2200
2201 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2199.318 kb on + strand at 2199.318 kb on + strand at 2199.321 kb on - strand at 2199.326 kb on - strand at 2199.326 kb on - strand at 2199.326 kb on - strand at 2199.326 kb on - strand at 2199.335 kb on + strand at 2199.352 kb on + strand at 2199.352 kb on + strand at 2199.360 kb on - strand at 2199.360 kb on - strand at 2199.362 kb on - strand at 2199.399 kb on - strand at 2199.441 kb on - strand at 2199.458 kb on - strand, within MPMX20_02104 at 2199.470 kb on + strand, within MPMX20_02104 at 2199.484 kb on + strand, within MPMX20_02104 at 2199.484 kb on + strand, within MPMX20_02104 at 2199.529 kb on + strand, within MPMX20_02104 at 2199.546 kb on + strand, within MPMX20_02104 at 2199.564 kb on - strand, within MPMX20_02104 at 2199.569 kb on + strand, within MPMX20_02104 at 2199.577 kb on - strand, within MPMX20_02104 at 2199.598 kb on - strand, within MPMX20_02104 at 2199.608 kb on - strand, within MPMX20_02104 at 2199.636 kb on - strand, within MPMX20_02104 at 2199.653 kb on - strand, within MPMX20_02104 at 2199.666 kb on + strand, within MPMX20_02104 at 2199.680 kb on + strand, within MPMX20_02104 at 2199.724 kb on - strand, within MPMX20_02104 at 2199.726 kb on + strand, within MPMX20_02104 at 2199.726 kb on + strand, within MPMX20_02104 at 2199.726 kb on + strand, within MPMX20_02104 at 2199.734 kb on - strand, within MPMX20_02104 at 2199.734 kb on - strand, within MPMX20_02104 at 2199.734 kb on - strand, within MPMX20_02104 at 2199.877 kb on + strand, within MPMX20_02105 at 2199.972 kb on + strand at 2199.978 kb on + strand at 2199.978 kb on + strand at 2199.978 kb on + strand at 2199.978 kb on + strand at 2199.978 kb on + strand at 2199.978 kb on + strand at 2199.978 kb on + strand at 2199.978 kb on + strand at 2199.978 kb on + strand at 2199.978 kb on + strand at 2199.980 kb on - strand at 2199.980 kb on - strand at 2199.986 kb on - strand at 2199.986 kb on - strand at 2199.986 kb on - strand at 2199.986 kb on - strand at 2199.986 kb on - strand at 2199.986 kb on - strand at 2199.988 kb on + strand at 2199.996 kb on - strand at 2199.996 kb on - strand at 2200.006 kb on - strand at 2200.011 kb on + strand at 2200.019 kb on - strand at 2200.044 kb on + strand at 2200.050 kb on - strand at 2200.052 kb on - strand at 2200.052 kb on - strand at 2200.052 kb on - strand at 2200.052 kb on - strand at 2200.052 kb on - strand at 2200.052 kb on - strand at 2200.057 kb on - strand at 2200.074 kb on - strand at 2200.074 kb on - strand at 2200.084 kb on - strand at 2200.086 kb on + strand at 2200.086 kb on + strand at 2200.086 kb on + strand at 2200.094 kb on - strand at 2200.122 kb on - strand at 2200.160 kb on + strand at 2200.160 kb on + strand at 2200.160 kb on + strand at 2200.160 kb on + strand at 2200.160 kb on + strand at 2200.160 kb on + strand at 2200.168 kb on - strand at 2200.168 kb on - strand at 2200.168 kb on - strand at 2200.169 kb on - strand at 2200.200 kb on + strand at 2200.200 kb on + strand at 2200.200 kb on + strand at 2200.244 kb on - strand at 2200.249 kb on - strand at 2200.254 kb on - strand at 2200.261 kb on + strand at 2200.261 kb on + strand at 2200.261 kb on + strand at 2200.261 kb on + strand at 2200.261 kb on + strand at 2200.269 kb on - strand at 2200.269 kb on - strand at 2200.269 kb on - strand at 2200.269 kb on - strand at 2200.269 kb on - strand at 2200.274 kb on - strand at 2200.277 kb on - strand at 2200.279 kb on - strand at 2200.353 kb on + strand, within MPMX20_02106 at 2200.353 kb on + strand, within MPMX20_02106 at 2200.361 kb on - strand, within MPMX20_02106 at 2200.378 kb on - strand, within MPMX20_02106 at 2200.420 kb on - strand, within MPMX20_02106 at 2200.422 kb on + strand, within MPMX20_02106 at 2200.422 kb on + strand, within MPMX20_02106 at 2200.422 kb on + strand, within MPMX20_02106 at 2200.425 kb on - strand, within MPMX20_02106 at 2200.425 kb on - strand, within MPMX20_02106 at 2200.425 kb on - strand, within MPMX20_02106 at 2200.436 kb on + strand, within MPMX20_02106 at 2200.438 kb on + strand, within MPMX20_02106 at 2200.438 kb on + strand, within MPMX20_02106 at 2200.438 kb on + strand, within MPMX20_02106 at 2200.453 kb on + strand, within MPMX20_02106 at 2200.455 kb on + strand, within MPMX20_02106 at 2200.465 kb on + strand, within MPMX20_02106 at 2200.470 kb on + strand, within MPMX20_02106 at 2200.472 kb on + strand, within MPMX20_02106 at 2200.535 kb on + strand, within MPMX20_02106 at 2200.645 kb on - strand at 2200.728 kb on - strand at 2200.728 kb on - strand at 2200.747 kb on - strand at 2200.751 kb on - strand at 2200.754 kb on - strand at 2200.754 kb on - strand at 2200.754 kb on - strand at 2200.754 kb on - strand at 2200.754 kb on - strand at 2200.761 kb on - strand at 2200.761 kb on - strand at 2200.761 kb on - strand at 2200.768 kb on - strand at 2200.770 kb on - strand at 2200.788 kb on - strand at 2200.788 kb on - strand at 2200.788 kb on - strand at 2200.788 kb on - strand at 2200.788 kb on - strand at 2200.812 kb on - strand at 2200.839 kb on - strand at 2200.839 kb on - strand at 2200.879 kb on - strand at 2200.887 kb on - strand at 2200.905 kb on - strand at 2200.905 kb on - strand at 2200.906 kb on - strand at 2200.906 kb on - strand at 2200.906 kb on - strand at 2200.906 kb on - strand at 2200.906 kb on - strand at 2200.906 kb on - strand at 2200.906 kb on - strand at 2200.912 kb on + strand at 2200.920 kb on - strand at 2200.923 kb on - strand at 2201.043 kb on - strand, within MPMX20_02107 at 2201.043 kb on - strand, within MPMX20_02107 at 2201.060 kb on - strand, within MPMX20_02107 at 2201.060 kb on - strand, within MPMX20_02107 at 2201.060 kb on - strand, within MPMX20_02107 at 2201.060 kb on - strand, within MPMX20_02107 at 2201.060 kb on - strand, within MPMX20_02107 at 2201.060 kb on - strand, within MPMX20_02107 at 2201.060 kb on - strand, within MPMX20_02107 at 2201.060 kb on - strand, within MPMX20_02107 at 2201.060 kb on - strand, within MPMX20_02107 at 2201.060 kb on - strand, within MPMX20_02107 at 2201.060 kb on - strand, within MPMX20_02107 at 2201.060 kb on - strand, within MPMX20_02107 at 2201.060 kb on - strand, within MPMX20_02107 at 2201.060 kb on - strand, within MPMX20_02107 at 2201.060 kb on - strand, within MPMX20_02107 at 2201.060 kb on - strand, within MPMX20_02107 at 2201.060 kb on - strand, within MPMX20_02107 at 2201.060 kb on - strand, within MPMX20_02107 at 2201.065 kb on - strand, within MPMX20_02107 at 2201.067 kb on + strand, within MPMX20_02107 at 2201.067 kb on + strand, within MPMX20_02107 at 2201.070 kb on - strand, within MPMX20_02107 at 2201.080 kb on + strand, within MPMX20_02107 at 2201.088 kb on - strand, within MPMX20_02107 at 2201.088 kb on - strand, within MPMX20_02107 at 2201.095 kb on + strand, within MPMX20_02107 at 2201.097 kb on + strand, within MPMX20_02107 at 2201.097 kb on + strand, within MPMX20_02107 at 2201.097 kb on + strand, within MPMX20_02107 at 2201.097 kb on + strand, within MPMX20_02107 at 2201.103 kb on - strand, within MPMX20_02107 at 2201.105 kb on + strand, within MPMX20_02107 at 2201.105 kb on - strand, within MPMX20_02107 at 2201.105 kb on - strand, within MPMX20_02107 at 2201.105 kb on - strand, within MPMX20_02107 at 2201.105 kb on - strand, within MPMX20_02107 at 2201.105 kb on - strand, within MPMX20_02107 at 2201.105 kb on - strand, within MPMX20_02107 at 2201.105 kb on - strand, within MPMX20_02107 at 2201.105 kb on - strand, within MPMX20_02107 at 2201.105 kb on - strand, within MPMX20_02107 at 2201.105 kb on - strand, within MPMX20_02107 at 2201.105 kb on - strand, within MPMX20_02107 at 2201.130 kb on - strand, within MPMX20_02107 at 2201.176 kb on + strand, within MPMX20_02107 at 2201.193 kb on + strand, within MPMX20_02107 at 2201.193 kb on + strand, within MPMX20_02107 at 2201.196 kb on - strand, within MPMX20_02107 at 2201.216 kb on + strand, within MPMX20_02107 at 2201.218 kb on + strand, within MPMX20_02107 at 2201.218 kb on + strand, within MPMX20_02107 at 2201.218 kb on + strand, within MPMX20_02107 at 2201.218 kb on + strand, within MPMX20_02107 at 2201.218 kb on + strand, within MPMX20_02107 at 2201.224 kb on - strand, within MPMX20_02107 at 2201.224 kb on - strand, within MPMX20_02107 at 2201.224 kb on - strand, within MPMX20_02107 at 2201.226 kb on - strand, within MPMX20_02107 at 2201.226 kb on - strand, within MPMX20_02107 at 2201.226 kb on - strand, within MPMX20_02107 at 2201.244 kb on - strand, within MPMX20_02107 at 2201.264 kb on + strand at 2201.327 kb on - strand at 2201.328 kb on - strand at 2201.361 kb on - strand, within MPMX20_02108 at 2201.361 kb on - strand, within MPMX20_02108 at 2201.386 kb on - strand, within MPMX20_02108 at 2201.386 kb on - strand, within MPMX20_02108 at 2201.419 kb on - strand, within MPMX20_02108 at 2201.419 kb on - strand, within MPMX20_02108 at 2201.424 kb on - strand, within MPMX20_02108 at 2201.429 kb on - strand, within MPMX20_02108 at 2201.451 kb on - strand, within MPMX20_02108 at 2201.497 kb on - strand, within MPMX20_02108 at 2201.498 kb on - strand, within MPMX20_02108 at 2201.498 kb on - strand, within MPMX20_02108 at 2201.505 kb on - strand, within MPMX20_02108 at 2201.544 kb on - strand, within MPMX20_02108 at 2201.571 kb on + strand, within MPMX20_02108 at 2201.571 kb on + strand, within MPMX20_02108 at 2201.571 kb on + strand, within MPMX20_02108 at 2201.571 kb on + strand, within MPMX20_02108
Per-strain Table
Position Strand Gene LocusTag Fraction D-Tagatose (C) remove 2,199,318 + -2.3 2,199,318 + -2.3 2,199,321 - +1.9 2,199,326 - +0.5 2,199,326 - -1.6 2,199,326 - -1.2 2,199,326 - -1.6 2,199,335 + -0.1 2,199,352 + +0.1 2,199,352 + +0.5 2,199,360 - +0.0 2,199,360 - +0.1 2,199,362 - +1.3 2,199,399 - -1.5 2,199,441 - +0.5 2,199,458 - MPMX20_02104 0.14 -2.2 2,199,470 + MPMX20_02104 0.17 +0.3 2,199,484 + MPMX20_02104 0.20 -1.6 2,199,484 + MPMX20_02104 0.20 -2.1 2,199,529 + MPMX20_02104 0.31 -0.5 2,199,546 + MPMX20_02104 0.35 +0.4 2,199,564 - MPMX20_02104 0.40 +1.0 2,199,569 + MPMX20_02104 0.41 -1.9 2,199,577 - MPMX20_02104 0.43 -0.2 2,199,598 - MPMX20_02104 0.48 -3.0 2,199,608 - MPMX20_02104 0.50 -0.3 2,199,636 - MPMX20_02104 0.57 -0.4 2,199,653 - MPMX20_02104 0.61 +2.8 2,199,666 + MPMX20_02104 0.64 -3.2 2,199,680 + MPMX20_02104 0.68 +0.4 2,199,724 - MPMX20_02104 0.79 -0.5 2,199,726 + MPMX20_02104 0.79 +0.7 2,199,726 + MPMX20_02104 0.79 -1.5 2,199,726 + MPMX20_02104 0.79 -0.6 2,199,734 - MPMX20_02104 0.81 -3.9 2,199,734 - MPMX20_02104 0.81 -0.7 2,199,734 - MPMX20_02104 0.81 -2.5 2,199,877 + MPMX20_02105 0.28 -2.7 2,199,972 + -0.0 2,199,978 + +1.1 2,199,978 + -0.2 2,199,978 + -2.4 2,199,978 + -0.8 2,199,978 + -1.1 2,199,978 + +0.0 2,199,978 + +0.5 2,199,978 + -1.1 2,199,978 + +0.0 2,199,978 + +0.3 2,199,980 - +0.5 2,199,980 - -0.2 2,199,986 - -3.3 2,199,986 - +0.7 2,199,986 - -1.9 2,199,986 - +0.7 2,199,986 - -2.6 2,199,986 - +0.7 2,199,988 + -2.9 2,199,996 - -2.8 2,199,996 - -3.5 2,200,006 - -0.1 2,200,011 + +0.9 2,200,019 - +0.5 2,200,044 + -1.8 2,200,050 - +2.0 2,200,052 - -2.9 2,200,052 - -0.3 2,200,052 - -1.1 2,200,052 - -0.7 2,200,052 - +0.2 2,200,052 - +1.1 2,200,057 - -1.8 2,200,074 - -0.3 2,200,074 - -0.3 2,200,084 - -2.1 2,200,086 + +0.8 2,200,086 + -0.4 2,200,086 + +0.3 2,200,094 - +1.4 2,200,122 - +0.6 2,200,160 + -2.6 2,200,160 + -1.5 2,200,160 + -3.0 2,200,160 + -2.2 2,200,160 + -2.2 2,200,160 + -2.2 2,200,168 - -0.8 2,200,168 - +0.9 2,200,168 - -3.3 2,200,169 - -0.2 2,200,200 + -0.8 2,200,200 + +1.3 2,200,200 + -0.8 2,200,244 - -2.1 2,200,249 - +1.3 2,200,254 - -2.7 2,200,261 + -1.9 2,200,261 + +0.0 2,200,261 + -0.8 2,200,261 + +1.5 2,200,261 + -0.1 2,200,269 - -2.4 2,200,269 - +0.5 2,200,269 - -1.6 2,200,269 - +0.5 2,200,269 - -1.8 2,200,274 - -2.5 2,200,277 - -2.8 2,200,279 - -2.4 2,200,353 + MPMX20_02106 0.29 +0.5 2,200,353 + MPMX20_02106 0.29 -3.0 2,200,361 - MPMX20_02106 0.31 -1.6 2,200,378 - MPMX20_02106 0.37 -2.6 2,200,420 - MPMX20_02106 0.50 -2.9 2,200,422 + MPMX20_02106 0.51 -2.3 2,200,422 + MPMX20_02106 0.51 -2.8 2,200,422 + MPMX20_02106 0.51 +1.5 2,200,425 - MPMX20_02106 0.52 -1.5 2,200,425 - MPMX20_02106 0.52 -2.4 2,200,425 - MPMX20_02106 0.52 -2.8 2,200,436 + MPMX20_02106 0.55 -2.9 2,200,438 + MPMX20_02106 0.56 +2.0 2,200,438 + MPMX20_02106 0.56 -1.8 2,200,438 + MPMX20_02106 0.56 +0.8 2,200,453 + MPMX20_02106 0.61 -1.2 2,200,455 + MPMX20_02106 0.62 +0.0 2,200,465 + MPMX20_02106 0.65 -1.9 2,200,470 + MPMX20_02106 0.66 -0.5 2,200,472 + MPMX20_02106 0.67 +0.9 2,200,535 + MPMX20_02106 0.87 -2.3 2,200,645 - +1.5 2,200,728 - -0.1 2,200,728 - +0.1 2,200,747 - -2.2 2,200,751 - +0.6 2,200,754 - -0.6 2,200,754 - -1.3 2,200,754 - -2.6 2,200,754 - +1.3 2,200,754 - +1.4 2,200,761 - -1.5 2,200,761 - +2.8 2,200,761 - +2.7 2,200,768 - -0.5 2,200,770 - -1.1 2,200,788 - -0.8 2,200,788 - +1.5 2,200,788 - -0.1 2,200,788 - -2.2 2,200,788 - -3.1 2,200,812 - +0.4 2,200,839 - -2.3 2,200,839 - +0.2 2,200,879 - -3.1 2,200,887 - +3.7 2,200,905 - +0.9 2,200,905 - -2.2 2,200,906 - -1.9 2,200,906 - -1.8 2,200,906 - +0.4 2,200,906 - +2.7 2,200,906 - -0.2 2,200,906 - -1.1 2,200,906 - -2.5 2,200,912 + -2.9 2,200,920 - -1.2 2,200,923 - -1.8 2,201,043 - MPMX20_02107 0.27 -0.1 2,201,043 - MPMX20_02107 0.27 -3.1 2,201,060 - MPMX20_02107 0.32 +0.5 2,201,060 - MPMX20_02107 0.32 +1.5 2,201,060 - MPMX20_02107 0.32 +2.1 2,201,060 - MPMX20_02107 0.32 -0.6 2,201,060 - MPMX20_02107 0.32 +1.1 2,201,060 - MPMX20_02107 0.32 +1.4 2,201,060 - MPMX20_02107 0.32 -0.4 2,201,060 - MPMX20_02107 0.32 -0.5 2,201,060 - MPMX20_02107 0.32 +1.2 2,201,060 - MPMX20_02107 0.32 +0.8 2,201,060 - MPMX20_02107 0.32 -0.9 2,201,060 - MPMX20_02107 0.32 -3.0 2,201,060 - MPMX20_02107 0.32 -2.9 2,201,060 - MPMX20_02107 0.32 -0.2 2,201,060 - MPMX20_02107 0.32 +0.7 2,201,060 - MPMX20_02107 0.32 -2.2 2,201,060 - MPMX20_02107 0.32 +0.8 2,201,060 - MPMX20_02107 0.32 -0.6 2,201,065 - MPMX20_02107 0.34 -2.2 2,201,067 + MPMX20_02107 0.34 -0.5 2,201,067 + MPMX20_02107 0.34 -1.8 2,201,070 - MPMX20_02107 0.35 +0.4 2,201,080 + MPMX20_02107 0.38 -1.8 2,201,088 - MPMX20_02107 0.41 -0.9 2,201,088 - MPMX20_02107 0.41 +0.7 2,201,095 + MPMX20_02107 0.43 -0.1 2,201,097 + MPMX20_02107 0.43 -0.8 2,201,097 + MPMX20_02107 0.43 +1.8 2,201,097 + MPMX20_02107 0.43 -1.1 2,201,097 + MPMX20_02107 0.43 -0.5 2,201,103 - MPMX20_02107 0.45 -0.5 2,201,105 + MPMX20_02107 0.46 +1.0 2,201,105 - MPMX20_02107 0.46 -2.4 2,201,105 - MPMX20_02107 0.46 -2.6 2,201,105 - MPMX20_02107 0.46 +1.7 2,201,105 - MPMX20_02107 0.46 -0.8 2,201,105 - MPMX20_02107 0.46 -3.0 2,201,105 - MPMX20_02107 0.46 -2.3 2,201,105 - MPMX20_02107 0.46 +2.7 2,201,105 - MPMX20_02107 0.46 +0.7 2,201,105 - MPMX20_02107 0.46 +1.0 2,201,105 - MPMX20_02107 0.46 +0.4 2,201,105 - MPMX20_02107 0.46 -2.6 2,201,130 - MPMX20_02107 0.53 +0.8 2,201,176 + MPMX20_02107 0.67 +1.5 2,201,193 + MPMX20_02107 0.72 -3.3 2,201,193 + MPMX20_02107 0.72 +0.9 2,201,196 - MPMX20_02107 0.73 -1.6 2,201,216 + MPMX20_02107 0.79 -1.7 2,201,218 + MPMX20_02107 0.80 -1.6 2,201,218 + MPMX20_02107 0.80 -1.2 2,201,218 + MPMX20_02107 0.80 -1.7 2,201,218 + MPMX20_02107 0.80 -2.3 2,201,218 + MPMX20_02107 0.80 +0.7 2,201,224 - MPMX20_02107 0.82 -1.1 2,201,224 - MPMX20_02107 0.82 -3.9 2,201,224 - MPMX20_02107 0.82 -0.1 2,201,226 - MPMX20_02107 0.82 -1.5 2,201,226 - MPMX20_02107 0.82 -1.3 2,201,226 - MPMX20_02107 0.82 +0.8 2,201,244 - MPMX20_02107 0.88 -2.3 2,201,264 + -0.2 2,201,327 - -1.6 2,201,328 - -1.5 2,201,361 - MPMX20_02108 0.11 -0.1 2,201,361 - MPMX20_02108 0.11 +0.2 2,201,386 - MPMX20_02108 0.15 +0.1 2,201,386 - MPMX20_02108 0.15 +2.8 2,201,419 - MPMX20_02108 0.20 +1.5 2,201,419 - MPMX20_02108 0.20 -2.3 2,201,424 - MPMX20_02108 0.21 +1.0 2,201,429 - MPMX20_02108 0.21 +1.2 2,201,451 - MPMX20_02108 0.25 +1.5 2,201,497 - MPMX20_02108 0.32 +2.5 2,201,498 - MPMX20_02108 0.32 +0.6 2,201,498 - MPMX20_02108 0.32 -0.8 2,201,505 - MPMX20_02108 0.33 -1.4 2,201,544 - MPMX20_02108 0.39 -1.8 2,201,571 + MPMX20_02108 0.43 -2.7 2,201,571 + MPMX20_02108 0.43 -1.1 2,201,571 + MPMX20_02108 0.43 -1.5 2,201,571 + MPMX20_02108 0.43 +0.5
Or see this region's nucleotide sequence