Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03665 and MPMX20_03666 are separated by 514 nucleotides MPMX20_03666 and MPMX20_03667 are separated by 65 nucleotides
MPMX20_03665: MPMX20_03665 - Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase, at 3,859,179 to 3,860,543
_03665
MPMX20_03666: MPMX20_03666 - Serine transporter, at 3,861,058 to 3,862,353
_03666
MPMX20_03667: MPMX20_03667 - L-serine dehydratase 2, at 3,862,419 to 3,863,786
_03667
Position (kb)
3861
3862
3863 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 3860.063 kb on + strand, within MPMX20_03665 at 3860.075 kb on + strand, within MPMX20_03665 at 3860.099 kb on + strand, within MPMX20_03665 at 3860.191 kb on - strand, within MPMX20_03665 at 3860.214 kb on + strand, within MPMX20_03665 at 3860.214 kb on + strand, within MPMX20_03665 at 3860.214 kb on - strand, within MPMX20_03665 at 3860.229 kb on - strand, within MPMX20_03665 at 3860.264 kb on + strand, within MPMX20_03665 at 3860.301 kb on - strand, within MPMX20_03665 at 3860.302 kb on - strand, within MPMX20_03665 at 3860.305 kb on + strand, within MPMX20_03665 at 3860.305 kb on + strand, within MPMX20_03665 at 3860.400 kb on + strand, within MPMX20_03665 at 3860.400 kb on + strand, within MPMX20_03665 at 3860.408 kb on - strand at 3860.423 kb on + strand at 3860.466 kb on + strand at 3860.479 kb on - strand at 3860.489 kb on - strand at 3860.491 kb on + strand at 3860.501 kb on + strand at 3860.567 kb on - strand at 3860.701 kb on - strand at 3860.744 kb on + strand at 3860.744 kb on + strand at 3860.752 kb on - strand at 3860.752 kb on - strand at 3860.752 kb on - strand at 3860.789 kb on + strand at 3860.846 kb on + strand at 3860.847 kb on + strand at 3861.072 kb on + strand at 3861.072 kb on + strand at 3861.077 kb on + strand at 3861.080 kb on - strand at 3861.117 kb on + strand at 3861.142 kb on - strand at 3861.142 kb on - strand at 3861.164 kb on - strand at 3861.174 kb on - strand at 3861.193 kb on + strand, within MPMX20_03666 at 3861.251 kb on + strand, within MPMX20_03666 at 3861.259 kb on - strand, within MPMX20_03666 at 3861.269 kb on - strand, within MPMX20_03666 at 3861.275 kb on + strand, within MPMX20_03666 at 3861.349 kb on + strand, within MPMX20_03666 at 3861.366 kb on + strand, within MPMX20_03666 at 3861.374 kb on - strand, within MPMX20_03666 at 3861.386 kb on + strand, within MPMX20_03666 at 3861.435 kb on - strand, within MPMX20_03666 at 3861.442 kb on - strand, within MPMX20_03666 at 3861.515 kb on - strand, within MPMX20_03666 at 3861.626 kb on - strand, within MPMX20_03666 at 3861.651 kb on - strand, within MPMX20_03666 at 3861.651 kb on - strand, within MPMX20_03666 at 3861.678 kb on + strand, within MPMX20_03666 at 3861.686 kb on - strand, within MPMX20_03666 at 3861.719 kb on + strand, within MPMX20_03666 at 3861.769 kb on + strand, within MPMX20_03666 at 3861.839 kb on + strand, within MPMX20_03666 at 3861.840 kb on - strand, within MPMX20_03666 at 3861.860 kb on + strand, within MPMX20_03666 at 3861.860 kb on + strand, within MPMX20_03666 at 3861.865 kb on + strand, within MPMX20_03666 at 3861.873 kb on - strand, within MPMX20_03666 at 3862.013 kb on + strand, within MPMX20_03666 at 3862.028 kb on + strand, within MPMX20_03666 at 3862.036 kb on + strand, within MPMX20_03666 at 3862.038 kb on - strand, within MPMX20_03666 at 3862.044 kb on - strand, within MPMX20_03666 at 3862.082 kb on + strand, within MPMX20_03666 at 3862.083 kb on - strand, within MPMX20_03666 at 3862.119 kb on + strand, within MPMX20_03666 at 3862.123 kb on + strand, within MPMX20_03666 at 3862.127 kb on - strand, within MPMX20_03666 at 3862.136 kb on + strand, within MPMX20_03666 at 3862.230 kb on - strand at 3862.246 kb on + strand at 3862.271 kb on - strand at 3862.326 kb on + strand at 3862.326 kb on + strand at 3862.334 kb on - strand at 3862.336 kb on + strand at 3862.348 kb on - strand at 3862.369 kb on + strand at 3862.416 kb on + strand at 3862.510 kb on - strand at 3862.510 kb on - strand at 3862.563 kb on + strand, within MPMX20_03667 at 3862.587 kb on + strand, within MPMX20_03667 at 3862.587 kb on + strand, within MPMX20_03667 at 3862.637 kb on - strand, within MPMX20_03667 at 3863.018 kb on - strand, within MPMX20_03667 at 3863.040 kb on + strand, within MPMX20_03667 at 3863.042 kb on + strand, within MPMX20_03667 at 3863.050 kb on - strand, within MPMX20_03667 at 3863.266 kb on - strand, within MPMX20_03667 at 3863.273 kb on + strand, within MPMX20_03667 at 3863.281 kb on - strand, within MPMX20_03667 at 3863.304 kb on + strand, within MPMX20_03667 at 3863.309 kb on + strand, within MPMX20_03667
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 3,860,063 + MPMX20_03665 0.65 -1.6 3,860,075 + MPMX20_03665 0.66 -1.6 3,860,099 + MPMX20_03665 0.67 +0.7 3,860,191 - MPMX20_03665 0.74 -1.5 3,860,214 + MPMX20_03665 0.76 -0.3 3,860,214 + MPMX20_03665 0.76 +0.3 3,860,214 - MPMX20_03665 0.76 -0.5 3,860,229 - MPMX20_03665 0.77 +1.1 3,860,264 + MPMX20_03665 0.79 -1.6 3,860,301 - MPMX20_03665 0.82 -1.1 3,860,302 - MPMX20_03665 0.82 +0.1 3,860,305 + MPMX20_03665 0.82 +0.8 3,860,305 + MPMX20_03665 0.82 -3.9 3,860,400 + MPMX20_03665 0.89 -2.3 3,860,400 + MPMX20_03665 0.89 -2.1 3,860,408 - +1.4 3,860,423 + -1.1 3,860,466 + -1.8 3,860,479 - -0.8 3,860,489 - +0.5 3,860,491 + +0.7 3,860,501 + -1.7 3,860,567 - +0.6 3,860,701 - +1.4 3,860,744 + -3.5 3,860,744 + -0.3 3,860,752 - -3.1 3,860,752 - -0.5 3,860,752 - -1.0 3,860,789 + +0.0 3,860,846 + -1.8 3,860,847 + +1.3 3,861,072 + +0.3 3,861,072 + +1.8 3,861,077 + +0.2 3,861,080 - +1.9 3,861,117 + -0.7 3,861,142 - +1.4 3,861,142 - +0.4 3,861,164 - -2.1 3,861,174 - -2.8 3,861,193 + MPMX20_03666 0.10 +1.6 3,861,251 + MPMX20_03666 0.15 -1.5 3,861,259 - MPMX20_03666 0.16 +1.3 3,861,269 - MPMX20_03666 0.16 +0.6 3,861,275 + MPMX20_03666 0.17 -0.6 3,861,349 + MPMX20_03666 0.22 -2.0 3,861,366 + MPMX20_03666 0.24 +1.0 3,861,374 - MPMX20_03666 0.24 +2.6 3,861,386 + MPMX20_03666 0.25 -2.6 3,861,435 - MPMX20_03666 0.29 +2.0 3,861,442 - MPMX20_03666 0.30 -0.5 3,861,515 - MPMX20_03666 0.35 +1.8 3,861,626 - MPMX20_03666 0.44 +2.8 3,861,651 - MPMX20_03666 0.46 +0.2 3,861,651 - MPMX20_03666 0.46 +0.9 3,861,678 + MPMX20_03666 0.48 -2.9 3,861,686 - MPMX20_03666 0.48 -2.1 3,861,719 + MPMX20_03666 0.51 -2.8 3,861,769 + MPMX20_03666 0.55 -1.8 3,861,839 + MPMX20_03666 0.60 +3.3 3,861,840 - MPMX20_03666 0.60 -0.8 3,861,860 + MPMX20_03666 0.62 -0.0 3,861,860 + MPMX20_03666 0.62 -2.9 3,861,865 + MPMX20_03666 0.62 -1.7 3,861,873 - MPMX20_03666 0.63 -0.8 3,862,013 + MPMX20_03666 0.74 +0.0 3,862,028 + MPMX20_03666 0.75 -0.2 3,862,036 + MPMX20_03666 0.75 -1.5 3,862,038 - MPMX20_03666 0.76 +0.8 3,862,044 - MPMX20_03666 0.76 +2.3 3,862,082 + MPMX20_03666 0.79 +0.6 3,862,083 - MPMX20_03666 0.79 -0.5 3,862,119 + MPMX20_03666 0.82 -0.3 3,862,123 + MPMX20_03666 0.82 +0.3 3,862,127 - MPMX20_03666 0.82 -1.0 3,862,136 + MPMX20_03666 0.83 -1.8 3,862,230 - -1.7 3,862,246 + -0.3 3,862,271 - +1.5 3,862,326 + +0.0 3,862,326 + +0.6 3,862,334 - +0.7 3,862,336 + +0.4 3,862,348 - -0.9 3,862,369 + -0.8 3,862,416 + +1.5 3,862,510 - -0.4 3,862,510 - +0.3 3,862,563 + MPMX20_03667 0.11 -0.6 3,862,587 + MPMX20_03667 0.12 -0.2 3,862,587 + MPMX20_03667 0.12 -1.4 3,862,637 - MPMX20_03667 0.16 -0.8 3,863,018 - MPMX20_03667 0.44 +0.2 3,863,040 + MPMX20_03667 0.45 +4.4 3,863,042 + MPMX20_03667 0.46 -1.0 3,863,050 - MPMX20_03667 0.46 +1.4 3,863,266 - MPMX20_03667 0.62 -0.5 3,863,273 + MPMX20_03667 0.62 -0.5 3,863,281 - MPMX20_03667 0.63 +1.7 3,863,304 + MPMX20_03667 0.65 -0.5 3,863,309 + MPMX20_03667 0.65 -2.3
Or see this region's nucleotide sequence