Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03666

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03665 and MPMX20_03666 are separated by 514 nucleotidesMPMX20_03666 and MPMX20_03667 are separated by 65 nucleotides MPMX20_03665: MPMX20_03665 - Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase, at 3,859,179 to 3,860,543 _03665 MPMX20_03666: MPMX20_03666 - Serine transporter, at 3,861,058 to 3,862,353 _03666 MPMX20_03667: MPMX20_03667 - L-serine dehydratase 2, at 3,862,419 to 3,863,786 _03667 Position (kb) 3861 3862 3863Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 3860.063 kb on + strand, within MPMX20_03665at 3860.075 kb on + strand, within MPMX20_03665at 3860.099 kb on + strand, within MPMX20_03665at 3860.191 kb on - strand, within MPMX20_03665at 3860.214 kb on + strand, within MPMX20_03665at 3860.214 kb on + strand, within MPMX20_03665at 3860.214 kb on - strand, within MPMX20_03665at 3860.229 kb on - strand, within MPMX20_03665at 3860.264 kb on + strand, within MPMX20_03665at 3860.301 kb on - strand, within MPMX20_03665at 3860.302 kb on - strand, within MPMX20_03665at 3860.305 kb on + strand, within MPMX20_03665at 3860.305 kb on + strand, within MPMX20_03665at 3860.400 kb on + strand, within MPMX20_03665at 3860.400 kb on + strand, within MPMX20_03665at 3860.408 kb on - strandat 3860.423 kb on + strandat 3860.466 kb on + strandat 3860.479 kb on - strandat 3860.489 kb on - strandat 3860.491 kb on + strandat 3860.501 kb on + strandat 3860.567 kb on - strandat 3860.701 kb on - strandat 3860.744 kb on + strandat 3860.744 kb on + strandat 3860.752 kb on - strandat 3860.752 kb on - strandat 3860.752 kb on - strandat 3860.789 kb on + strandat 3860.846 kb on + strandat 3860.847 kb on + strandat 3861.072 kb on + strandat 3861.072 kb on + strandat 3861.077 kb on + strandat 3861.080 kb on - strandat 3861.117 kb on + strandat 3861.142 kb on - strandat 3861.142 kb on - strandat 3861.164 kb on - strandat 3861.174 kb on - strandat 3861.193 kb on + strand, within MPMX20_03666at 3861.251 kb on + strand, within MPMX20_03666at 3861.259 kb on - strand, within MPMX20_03666at 3861.269 kb on - strand, within MPMX20_03666at 3861.275 kb on + strand, within MPMX20_03666at 3861.349 kb on + strand, within MPMX20_03666at 3861.366 kb on + strand, within MPMX20_03666at 3861.374 kb on - strand, within MPMX20_03666at 3861.386 kb on + strand, within MPMX20_03666at 3861.435 kb on - strand, within MPMX20_03666at 3861.442 kb on - strand, within MPMX20_03666at 3861.515 kb on - strand, within MPMX20_03666at 3861.626 kb on - strand, within MPMX20_03666at 3861.651 kb on - strand, within MPMX20_03666at 3861.651 kb on - strand, within MPMX20_03666at 3861.678 kb on + strand, within MPMX20_03666at 3861.686 kb on - strand, within MPMX20_03666at 3861.719 kb on + strand, within MPMX20_03666at 3861.769 kb on + strand, within MPMX20_03666at 3861.839 kb on + strand, within MPMX20_03666at 3861.840 kb on - strand, within MPMX20_03666at 3861.860 kb on + strand, within MPMX20_03666at 3861.860 kb on + strand, within MPMX20_03666at 3861.865 kb on + strand, within MPMX20_03666at 3861.873 kb on - strand, within MPMX20_03666at 3862.013 kb on + strand, within MPMX20_03666at 3862.028 kb on + strand, within MPMX20_03666at 3862.036 kb on + strand, within MPMX20_03666at 3862.038 kb on - strand, within MPMX20_03666at 3862.044 kb on - strand, within MPMX20_03666at 3862.082 kb on + strand, within MPMX20_03666at 3862.083 kb on - strand, within MPMX20_03666at 3862.119 kb on + strand, within MPMX20_03666at 3862.123 kb on + strand, within MPMX20_03666at 3862.127 kb on - strand, within MPMX20_03666at 3862.136 kb on + strand, within MPMX20_03666at 3862.230 kb on - strandat 3862.246 kb on + strandat 3862.271 kb on - strandat 3862.326 kb on + strandat 3862.326 kb on + strandat 3862.334 kb on - strandat 3862.336 kb on + strandat 3862.348 kb on - strandat 3862.369 kb on + strandat 3862.416 kb on + strandat 3862.510 kb on - strandat 3862.510 kb on - strandat 3862.563 kb on + strand, within MPMX20_03667at 3862.587 kb on + strand, within MPMX20_03667at 3862.587 kb on + strand, within MPMX20_03667at 3862.637 kb on - strand, within MPMX20_03667at 3863.018 kb on - strand, within MPMX20_03667at 3863.040 kb on + strand, within MPMX20_03667at 3863.042 kb on + strand, within MPMX20_03667at 3863.050 kb on - strand, within MPMX20_03667at 3863.266 kb on - strand, within MPMX20_03667at 3863.273 kb on + strand, within MPMX20_03667at 3863.281 kb on - strand, within MPMX20_03667at 3863.304 kb on + strand, within MPMX20_03667at 3863.309 kb on + strand, within MPMX20_03667

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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3,860,063 + MPMX20_03665 0.65 -1.6
3,860,075 + MPMX20_03665 0.66 -1.6
3,860,099 + MPMX20_03665 0.67 +0.7
3,860,191 - MPMX20_03665 0.74 -1.5
3,860,214 + MPMX20_03665 0.76 -0.3
3,860,214 + MPMX20_03665 0.76 +0.3
3,860,214 - MPMX20_03665 0.76 -0.5
3,860,229 - MPMX20_03665 0.77 +1.1
3,860,264 + MPMX20_03665 0.79 -1.6
3,860,301 - MPMX20_03665 0.82 -1.1
3,860,302 - MPMX20_03665 0.82 +0.1
3,860,305 + MPMX20_03665 0.82 +0.8
3,860,305 + MPMX20_03665 0.82 -3.9
3,860,400 + MPMX20_03665 0.89 -2.3
3,860,400 + MPMX20_03665 0.89 -2.1
3,860,408 - +1.4
3,860,423 + -1.1
3,860,466 + -1.8
3,860,479 - -0.8
3,860,489 - +0.5
3,860,491 + +0.7
3,860,501 + -1.7
3,860,567 - +0.6
3,860,701 - +1.4
3,860,744 + -3.5
3,860,744 + -0.3
3,860,752 - -3.1
3,860,752 - -0.5
3,860,752 - -1.0
3,860,789 + +0.0
3,860,846 + -1.8
3,860,847 + +1.3
3,861,072 + +0.3
3,861,072 + +1.8
3,861,077 + +0.2
3,861,080 - +1.9
3,861,117 + -0.7
3,861,142 - +1.4
3,861,142 - +0.4
3,861,164 - -2.1
3,861,174 - -2.8
3,861,193 + MPMX20_03666 0.10 +1.6
3,861,251 + MPMX20_03666 0.15 -1.5
3,861,259 - MPMX20_03666 0.16 +1.3
3,861,269 - MPMX20_03666 0.16 +0.6
3,861,275 + MPMX20_03666 0.17 -0.6
3,861,349 + MPMX20_03666 0.22 -2.0
3,861,366 + MPMX20_03666 0.24 +1.0
3,861,374 - MPMX20_03666 0.24 +2.6
3,861,386 + MPMX20_03666 0.25 -2.6
3,861,435 - MPMX20_03666 0.29 +2.0
3,861,442 - MPMX20_03666 0.30 -0.5
3,861,515 - MPMX20_03666 0.35 +1.8
3,861,626 - MPMX20_03666 0.44 +2.8
3,861,651 - MPMX20_03666 0.46 +0.2
3,861,651 - MPMX20_03666 0.46 +0.9
3,861,678 + MPMX20_03666 0.48 -2.9
3,861,686 - MPMX20_03666 0.48 -2.1
3,861,719 + MPMX20_03666 0.51 -2.8
3,861,769 + MPMX20_03666 0.55 -1.8
3,861,839 + MPMX20_03666 0.60 +3.3
3,861,840 - MPMX20_03666 0.60 -0.8
3,861,860 + MPMX20_03666 0.62 -0.0
3,861,860 + MPMX20_03666 0.62 -2.9
3,861,865 + MPMX20_03666 0.62 -1.7
3,861,873 - MPMX20_03666 0.63 -0.8
3,862,013 + MPMX20_03666 0.74 +0.0
3,862,028 + MPMX20_03666 0.75 -0.2
3,862,036 + MPMX20_03666 0.75 -1.5
3,862,038 - MPMX20_03666 0.76 +0.8
3,862,044 - MPMX20_03666 0.76 +2.3
3,862,082 + MPMX20_03666 0.79 +0.6
3,862,083 - MPMX20_03666 0.79 -0.5
3,862,119 + MPMX20_03666 0.82 -0.3
3,862,123 + MPMX20_03666 0.82 +0.3
3,862,127 - MPMX20_03666 0.82 -1.0
3,862,136 + MPMX20_03666 0.83 -1.8
3,862,230 - -1.7
3,862,246 + -0.3
3,862,271 - +1.5
3,862,326 + +0.0
3,862,326 + +0.6
3,862,334 - +0.7
3,862,336 + +0.4
3,862,348 - -0.9
3,862,369 + -0.8
3,862,416 + +1.5
3,862,510 - -0.4
3,862,510 - +0.3
3,862,563 + MPMX20_03667 0.11 -0.6
3,862,587 + MPMX20_03667 0.12 -0.2
3,862,587 + MPMX20_03667 0.12 -1.4
3,862,637 - MPMX20_03667 0.16 -0.8
3,863,018 - MPMX20_03667 0.44 +0.2
3,863,040 + MPMX20_03667 0.45 +4.4
3,863,042 + MPMX20_03667 0.46 -1.0
3,863,050 - MPMX20_03667 0.46 +1.4
3,863,266 - MPMX20_03667 0.62 -0.5
3,863,273 + MPMX20_03667 0.62 -0.5
3,863,281 - MPMX20_03667 0.63 +1.7
3,863,304 + MPMX20_03667 0.65 -0.5
3,863,309 + MPMX20_03667 0.65 -2.3

Or see this region's nucleotide sequence