Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00735

Experiment: butyrate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_00733 and MPMX20_00734 are separated by 10 nucleotidesMPMX20_00734 and MPMX20_00735 are separated by 9 nucleotidesMPMX20_00735 and MPMX20_00736 are separated by 2 nucleotides MPMX20_00733: MPMX20_00733 - PTS system sorbose-specific EIIC component, at 757,054 to 757,851 _00733 MPMX20_00734: MPMX20_00734 - PTS system fructose-specific EIIB component, at 757,862 to 758,356 _00734 MPMX20_00735: MPMX20_00735 - hypothetical protein, at 758,366 to 758,794 _00735 MPMX20_00736: MPMX20_00736 - hypothetical protein, at 758,797 to 760,539 _00736 Position (kb) 758 759Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 757.375 kb on - strand, within MPMX20_00733at 757.387 kb on + strand, within MPMX20_00733at 757.498 kb on - strand, within MPMX20_00733at 757.500 kb on - strand, within MPMX20_00733at 757.508 kb on + strand, within MPMX20_00733at 757.516 kb on - strand, within MPMX20_00733at 757.516 kb on - strand, within MPMX20_00733at 757.563 kb on + strand, within MPMX20_00733at 757.612 kb on - strand, within MPMX20_00733at 757.724 kb on - strand, within MPMX20_00733at 757.801 kb on - strandat 757.814 kb on + strandat 757.814 kb on + strandat 757.937 kb on + strand, within MPMX20_00734at 757.945 kb on - strand, within MPMX20_00734at 757.963 kb on - strand, within MPMX20_00734at 757.963 kb on - strand, within MPMX20_00734at 757.963 kb on - strand, within MPMX20_00734at 757.970 kb on - strand, within MPMX20_00734at 757.990 kb on + strand, within MPMX20_00734at 757.998 kb on - strand, within MPMX20_00734at 757.998 kb on - strand, within MPMX20_00734at 758.004 kb on + strand, within MPMX20_00734at 758.010 kb on + strand, within MPMX20_00734at 758.065 kb on + strand, within MPMX20_00734at 758.073 kb on - strand, within MPMX20_00734at 758.088 kb on - strand, within MPMX20_00734at 758.097 kb on - strand, within MPMX20_00734at 758.129 kb on - strand, within MPMX20_00734at 758.129 kb on - strand, within MPMX20_00734at 758.175 kb on + strand, within MPMX20_00734at 758.183 kb on - strand, within MPMX20_00734at 758.185 kb on + strand, within MPMX20_00734at 758.185 kb on + strand, within MPMX20_00734at 758.206 kb on - strand, within MPMX20_00734at 758.295 kb on - strand, within MPMX20_00734at 758.311 kb on + strandat 758.354 kb on + strandat 758.362 kb on - strandat 758.408 kb on + strandat 758.413 kb on + strand, within MPMX20_00735at 758.578 kb on + strand, within MPMX20_00735at 758.644 kb on - strand, within MPMX20_00735at 758.668 kb on - strand, within MPMX20_00735at 758.681 kb on - strand, within MPMX20_00735at 758.800 kb on + strandat 758.809 kb on - strandat 758.809 kb on - strandat 758.812 kb on + strandat 758.812 kb on + strandat 758.842 kb on + strandat 758.850 kb on - strandat 758.885 kb on - strandat 758.916 kb on - strandat 758.916 kb on - strandat 758.948 kb on + strandat 759.065 kb on - strand, within MPMX20_00736at 759.065 kb on - strand, within MPMX20_00736at 759.112 kb on - strand, within MPMX20_00736at 759.199 kb on - strand, within MPMX20_00736at 759.204 kb on - strand, within MPMX20_00736at 759.216 kb on + strand, within MPMX20_00736at 759.234 kb on - strand, within MPMX20_00736at 759.234 kb on - strand, within MPMX20_00736at 759.386 kb on - strand, within MPMX20_00736at 759.397 kb on - strand, within MPMX20_00736at 759.454 kb on + strand, within MPMX20_00736at 759.498 kb on - strand, within MPMX20_00736at 759.511 kb on - strand, within MPMX20_00736at 759.515 kb on + strand, within MPMX20_00736at 759.599 kb on - strand, within MPMX20_00736at 759.641 kb on - strand, within MPMX20_00736at 759.765 kb on + strand, within MPMX20_00736at 759.773 kb on - strand, within MPMX20_00736

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
remove
757,375 - MPMX20_00733 0.40 -2.8
757,387 + MPMX20_00733 0.42 +1.5
757,498 - MPMX20_00733 0.56 +0.0
757,500 - MPMX20_00733 0.56 +0.4
757,508 + MPMX20_00733 0.57 -0.0
757,516 - MPMX20_00733 0.58 -0.2
757,516 - MPMX20_00733 0.58 -2.3
757,563 + MPMX20_00733 0.64 +1.6
757,612 - MPMX20_00733 0.70 +1.1
757,724 - MPMX20_00733 0.84 +1.0
757,801 - +3.0
757,814 + +0.4
757,814 + -2.2
757,937 + MPMX20_00734 0.15 -0.2
757,945 - MPMX20_00734 0.17 -3.1
757,963 - MPMX20_00734 0.20 -2.3
757,963 - MPMX20_00734 0.20 -0.6
757,963 - MPMX20_00734 0.20 +1.0
757,970 - MPMX20_00734 0.22 +1.2
757,990 + MPMX20_00734 0.26 +0.1
757,998 - MPMX20_00734 0.27 +1.5
757,998 - MPMX20_00734 0.27 -0.8
758,004 + MPMX20_00734 0.29 -0.3
758,010 + MPMX20_00734 0.30 +0.1
758,065 + MPMX20_00734 0.41 -3.3
758,073 - MPMX20_00734 0.43 +1.1
758,088 - MPMX20_00734 0.46 -1.4
758,097 - MPMX20_00734 0.47 -0.3
758,129 - MPMX20_00734 0.54 -1.8
758,129 - MPMX20_00734 0.54 -2.5
758,175 + MPMX20_00734 0.63 -1.8
758,183 - MPMX20_00734 0.65 -3.3
758,185 + MPMX20_00734 0.65 -0.5
758,185 + MPMX20_00734 0.65 +1.5
758,206 - MPMX20_00734 0.69 -0.2
758,295 - MPMX20_00734 0.87 +1.1
758,311 + -0.5
758,354 + +0.6
758,362 - -1.4
758,408 + -3.6
758,413 + MPMX20_00735 0.11 -0.2
758,578 + MPMX20_00735 0.49 -1.1
758,644 - MPMX20_00735 0.65 -0.3
758,668 - MPMX20_00735 0.70 -3.7
758,681 - MPMX20_00735 0.73 -3.8
758,800 + +0.2
758,809 - +0.9
758,809 - -0.7
758,812 + -0.2
758,812 + -1.3
758,842 + +0.5
758,850 - +2.1
758,885 - +0.9
758,916 - -0.1
758,916 - +1.7
758,948 + +0.9
759,065 - MPMX20_00736 0.15 +1.4
759,065 - MPMX20_00736 0.15 -0.9
759,112 - MPMX20_00736 0.18 +0.2
759,199 - MPMX20_00736 0.23 -2.6
759,204 - MPMX20_00736 0.23 -1.0
759,216 + MPMX20_00736 0.24 -3.1
759,234 - MPMX20_00736 0.25 -0.9
759,234 - MPMX20_00736 0.25 -2.4
759,386 - MPMX20_00736 0.34 -1.5
759,397 - MPMX20_00736 0.34 +0.3
759,454 + MPMX20_00736 0.38 +1.0
759,498 - MPMX20_00736 0.40 -0.7
759,511 - MPMX20_00736 0.41 +1.2
759,515 + MPMX20_00736 0.41 +3.8
759,599 - MPMX20_00736 0.46 -1.5
759,641 - MPMX20_00736 0.48 -1.5
759,765 + MPMX20_00736 0.56 -1.5
759,773 - MPMX20_00736 0.56 -1.5

Or see this region's nucleotide sequence