Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00521

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00519 and MPMX20_00520 are separated by 10 nucleotidesMPMX20_00520 and MPMX20_00521 are separated by 2 nucleotidesMPMX20_00521 and MPMX20_00522 are separated by 22 nucleotidesMPMX20_00522 and MPMX20_00523 are separated by 13 nucleotides MPMX20_00519: MPMX20_00519 - hypothetical protein, at 537,219 to 537,539 _00519 MPMX20_00520: MPMX20_00520 - hypothetical protein, at 537,550 to 537,912 _00520 MPMX20_00521: MPMX20_00521 - hypothetical protein, at 537,915 to 538,214 _00521 MPMX20_00522: MPMX20_00522 - hypothetical protein, at 538,237 to 539,013 _00522 MPMX20_00523: MPMX20_00523 - hypothetical protein, at 539,027 to 539,668 _00523 Position (kb) 537 538 539Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 537.012 kb on + strandat 537.020 kb on - strandat 537.088 kb on + strandat 537.090 kb on + strandat 537.093 kb on + strandat 537.093 kb on + strandat 537.101 kb on - strandat 537.101 kb on - strandat 537.101 kb on - strandat 537.101 kb on - strandat 537.101 kb on - strandat 537.101 kb on - strandat 537.101 kb on - strandat 537.104 kb on + strandat 537.104 kb on + strandat 537.104 kb on + strandat 537.119 kb on - strandat 537.196 kb on + strandat 537.216 kb on + strandat 537.224 kb on - strandat 537.224 kb on - strandat 537.242 kb on + strandat 537.250 kb on + strandat 537.260 kb on + strand, within MPMX20_00519at 537.268 kb on - strand, within MPMX20_00519at 537.274 kb on - strand, within MPMX20_00519at 537.281 kb on + strand, within MPMX20_00519at 537.281 kb on + strand, within MPMX20_00519at 537.281 kb on + strand, within MPMX20_00519at 537.281 kb on + strand, within MPMX20_00519at 537.281 kb on + strand, within MPMX20_00519at 537.281 kb on + strand, within MPMX20_00519at 537.281 kb on + strand, within MPMX20_00519at 537.289 kb on - strand, within MPMX20_00519at 537.291 kb on - strand, within MPMX20_00519at 537.310 kb on - strand, within MPMX20_00519at 537.324 kb on + strand, within MPMX20_00519at 537.351 kb on - strand, within MPMX20_00519at 537.379 kb on + strand, within MPMX20_00519at 537.393 kb on + strand, within MPMX20_00519at 537.398 kb on + strand, within MPMX20_00519at 537.406 kb on - strand, within MPMX20_00519at 537.406 kb on - strand, within MPMX20_00519at 537.499 kb on - strand, within MPMX20_00519at 537.512 kb on + strandat 537.525 kb on + strandat 537.541 kb on - strandat 537.541 kb on - strandat 537.558 kb on + strandat 537.566 kb on - strandat 537.566 kb on - strandat 537.669 kb on - strand, within MPMX20_00520at 537.736 kb on + strand, within MPMX20_00520at 537.738 kb on + strand, within MPMX20_00520at 537.744 kb on - strand, within MPMX20_00520at 537.780 kb on - strand, within MPMX20_00520at 537.786 kb on + strand, within MPMX20_00520at 537.803 kb on - strand, within MPMX20_00520at 537.832 kb on + strand, within MPMX20_00520at 537.840 kb on - strand, within MPMX20_00520at 537.840 kb on - strand, within MPMX20_00520at 537.840 kb on - strand, within MPMX20_00520at 537.846 kb on - strand, within MPMX20_00520at 537.847 kb on - strand, within MPMX20_00520at 537.888 kb on - strandat 537.905 kb on + strandat 537.926 kb on + strandat 537.934 kb on - strandat 537.935 kb on - strandat 537.939 kb on - strandat 537.950 kb on + strand, within MPMX20_00521at 537.950 kb on + strand, within MPMX20_00521at 537.958 kb on - strand, within MPMX20_00521at 537.961 kb on + strand, within MPMX20_00521at 538.000 kb on - strand, within MPMX20_00521at 538.055 kb on + strand, within MPMX20_00521at 538.155 kb on - strand, within MPMX20_00521at 538.188 kb on - strandat 538.230 kb on - strandat 538.338 kb on + strand, within MPMX20_00522at 538.338 kb on + strand, within MPMX20_00522at 538.338 kb on + strand, within MPMX20_00522at 538.338 kb on + strand, within MPMX20_00522at 538.338 kb on + strand, within MPMX20_00522at 538.338 kb on + strand, within MPMX20_00522at 538.338 kb on + strand, within MPMX20_00522at 538.338 kb on + strand, within MPMX20_00522at 538.346 kb on - strand, within MPMX20_00522at 538.346 kb on - strand, within MPMX20_00522at 538.401 kb on + strand, within MPMX20_00522at 538.414 kb on - strand, within MPMX20_00522at 538.414 kb on - strand, within MPMX20_00522at 538.458 kb on + strand, within MPMX20_00522at 538.472 kb on + strand, within MPMX20_00522at 538.480 kb on - strand, within MPMX20_00522at 538.513 kb on - strand, within MPMX20_00522at 538.538 kb on + strand, within MPMX20_00522at 538.615 kb on - strand, within MPMX20_00522at 538.615 kb on - strand, within MPMX20_00522at 538.615 kb on - strand, within MPMX20_00522at 538.640 kb on + strand, within MPMX20_00522at 538.642 kb on + strand, within MPMX20_00522at 538.671 kb on - strand, within MPMX20_00522at 538.775 kb on + strand, within MPMX20_00522at 538.778 kb on + strand, within MPMX20_00522at 538.794 kb on + strand, within MPMX20_00522at 538.841 kb on + strand, within MPMX20_00522at 538.855 kb on + strand, within MPMX20_00522at 538.910 kb on - strand, within MPMX20_00522at 538.982 kb on + strandat 539.043 kb on - strandat 539.043 kb on - strandat 539.076 kb on + strandat 539.086 kb on + strandat 539.089 kb on - strandat 539.094 kb on - strand, within MPMX20_00523at 539.097 kb on - strand, within MPMX20_00523at 539.141 kb on - strand, within MPMX20_00523at 539.143 kb on + strand, within MPMX20_00523

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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537,012 + -3.2
537,020 - -2.0
537,088 + -1.3
537,090 + -1.2
537,093 + +0.5
537,093 + -0.4
537,101 - -1.6
537,101 - +0.6
537,101 - -0.2
537,101 - -1.3
537,101 - -0.9
537,101 - -2.2
537,101 - +1.5
537,104 + +0.4
537,104 + -1.3
537,104 + +1.9
537,119 - +2.1
537,196 + -3.7
537,216 + -1.2
537,224 - +0.7
537,224 - +0.7
537,242 + +1.5
537,250 + -2.4
537,260 + MPMX20_00519 0.13 -1.4
537,268 - MPMX20_00519 0.15 +0.5
537,274 - MPMX20_00519 0.17 +2.0
537,281 + MPMX20_00519 0.19 -0.1
537,281 + MPMX20_00519 0.19 -2.7
537,281 + MPMX20_00519 0.19 -0.0
537,281 + MPMX20_00519 0.19 +0.4
537,281 + MPMX20_00519 0.19 -1.5
537,281 + MPMX20_00519 0.19 -0.5
537,281 + MPMX20_00519 0.19 -2.9
537,289 - MPMX20_00519 0.22 +1.0
537,291 - MPMX20_00519 0.22 -0.6
537,310 - MPMX20_00519 0.28 -0.5
537,324 + MPMX20_00519 0.33 -0.5
537,351 - MPMX20_00519 0.41 -2.0
537,379 + MPMX20_00519 0.50 -1.4
537,393 + MPMX20_00519 0.54 -0.2
537,398 + MPMX20_00519 0.56 +0.6
537,406 - MPMX20_00519 0.58 -1.3
537,406 - MPMX20_00519 0.58 -3.0
537,499 - MPMX20_00519 0.87 -3.4
537,512 + -0.4
537,525 + +2.9
537,541 - +1.6
537,541 - +0.6
537,558 + +2.5
537,566 - -1.0
537,566 - +0.0
537,669 - MPMX20_00520 0.33 +2.5
537,736 + MPMX20_00520 0.51 +1.2
537,738 + MPMX20_00520 0.52 -2.2
537,744 - MPMX20_00520 0.53 -0.6
537,780 - MPMX20_00520 0.63 +2.3
537,786 + MPMX20_00520 0.65 -2.1
537,803 - MPMX20_00520 0.70 +0.7
537,832 + MPMX20_00520 0.78 +1.7
537,840 - MPMX20_00520 0.80 -0.7
537,840 - MPMX20_00520 0.80 -2.9
537,840 - MPMX20_00520 0.80 +2.6
537,846 - MPMX20_00520 0.82 -1.7
537,847 - MPMX20_00520 0.82 -3.6
537,888 - +0.9
537,905 + +0.8
537,926 + +0.6
537,934 - -3.0
537,935 - -0.8
537,939 - +1.6
537,950 + MPMX20_00521 0.12 -3.8
537,950 + MPMX20_00521 0.12 +0.1
537,958 - MPMX20_00521 0.14 +0.2
537,961 + MPMX20_00521 0.15 -1.8
538,000 - MPMX20_00521 0.28 -2.7
538,055 + MPMX20_00521 0.47 -2.3
538,155 - MPMX20_00521 0.80 -0.6
538,188 - +1.2
538,230 - -2.5
538,338 + MPMX20_00522 0.13 +0.8
538,338 + MPMX20_00522 0.13 +3.7
538,338 + MPMX20_00522 0.13 -3.7
538,338 + MPMX20_00522 0.13 -1.3
538,338 + MPMX20_00522 0.13 +0.2
538,338 + MPMX20_00522 0.13 +1.0
538,338 + MPMX20_00522 0.13 -0.2
538,338 + MPMX20_00522 0.13 -0.3
538,346 - MPMX20_00522 0.14 +0.6
538,346 - MPMX20_00522 0.14 -3.2
538,401 + MPMX20_00522 0.21 -0.1
538,414 - MPMX20_00522 0.23 +1.0
538,414 - MPMX20_00522 0.23 +0.9
538,458 + MPMX20_00522 0.28 +2.3
538,472 + MPMX20_00522 0.30 -0.3
538,480 - MPMX20_00522 0.31 +2.0
538,513 - MPMX20_00522 0.36 +0.7
538,538 + MPMX20_00522 0.39 -1.6
538,615 - MPMX20_00522 0.49 +0.0
538,615 - MPMX20_00522 0.49 -1.0
538,615 - MPMX20_00522 0.49 -2.0
538,640 + MPMX20_00522 0.52 +3.4
538,642 + MPMX20_00522 0.52 -0.6
538,671 - MPMX20_00522 0.56 -0.4
538,775 + MPMX20_00522 0.69 -0.3
538,778 + MPMX20_00522 0.70 -2.0
538,794 + MPMX20_00522 0.72 -0.5
538,841 + MPMX20_00522 0.78 +0.2
538,855 + MPMX20_00522 0.80 -0.5
538,910 - MPMX20_00522 0.87 -2.4
538,982 + +1.4
539,043 - -0.4
539,043 - -2.7
539,076 + -2.1
539,086 + -3.1
539,089 - +2.3
539,094 - MPMX20_00523 0.10 -3.1
539,097 - MPMX20_00523 0.11 +2.6
539,141 - MPMX20_00523 0.18 +1.3
539,143 + MPMX20_00523 0.18 +0.2

Or see this region's nucleotide sequence