Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04739 and MPMX20_04740 are separated by 358 nucleotides MPMX20_04740 and MPMX20_04741 are separated by 179 nucleotides MPMX20_04741 and MPMX20_04742 overlap by 1 nucleotides
MPMX20_04739: MPMX20_04739 - DNA adenine methyltransferase YhdJ, at 83,827 to 84,504
_04739
MPMX20_04740: MPMX20_04740 - SOS response-associated protein YedK, at 84,863 to 85,534
_04740
MPMX20_04741: MPMX20_04741 - Protein UmuD, at 85,714 to 86,136
_04741
MPMX20_04742: MPMX20_04742 - Protein UmuC, at 86,136 to 86,807
_04742
Position (kb) 84
85
86 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 83.866 kb on - strand at 83.909 kb on - strand, within MPMX20_04739 at 83.928 kb on + strand, within MPMX20_04739 at 83.928 kb on + strand, within MPMX20_04739 at 83.944 kb on + strand, within MPMX20_04739 at 83.962 kb on - strand, within MPMX20_04739 at 83.974 kb on + strand, within MPMX20_04739 at 83.982 kb on - strand, within MPMX20_04739 at 84.060 kb on - strand, within MPMX20_04739 at 84.083 kb on - strand, within MPMX20_04739 at 84.154 kb on + strand, within MPMX20_04739 at 84.154 kb on + strand, within MPMX20_04739 at 84.161 kb on - strand, within MPMX20_04739 at 84.162 kb on - strand, within MPMX20_04739 at 84.162 kb on - strand, within MPMX20_04739 at 84.162 kb on - strand, within MPMX20_04739 at 84.178 kb on + strand, within MPMX20_04739 at 84.186 kb on - strand, within MPMX20_04739 at 84.275 kb on + strand, within MPMX20_04739 at 84.326 kb on + strand, within MPMX20_04739 at 84.333 kb on + strand, within MPMX20_04739 at 84.333 kb on + strand, within MPMX20_04739 at 84.334 kb on - strand, within MPMX20_04739 at 84.341 kb on - strand, within MPMX20_04739 at 84.382 kb on + strand, within MPMX20_04739 at 84.388 kb on + strand, within MPMX20_04739 at 84.396 kb on - strand, within MPMX20_04739 at 84.407 kb on - strand, within MPMX20_04739 at 84.479 kb on + strand at 84.487 kb on - strand at 84.487 kb on - strand at 84.502 kb on - strand at 84.576 kb on + strand at 84.576 kb on + strand at 84.584 kb on - strand at 84.685 kb on - strand at 84.706 kb on + strand at 84.714 kb on + strand at 84.714 kb on - strand at 84.714 kb on - strand at 84.714 kb on - strand at 84.722 kb on + strand at 84.722 kb on - strand at 84.723 kb on + strand at 84.732 kb on - strand at 84.750 kb on + strand at 84.758 kb on - strand at 84.798 kb on - strand at 84.798 kb on - strand at 84.806 kb on + strand at 84.814 kb on - strand at 84.814 kb on - strand at 84.816 kb on + strand at 84.836 kb on - strand at 84.873 kb on + strand at 84.883 kb on + strand at 84.904 kb on - strand at 84.956 kb on - strand, within MPMX20_04740 at 84.964 kb on - strand, within MPMX20_04740 at 84.992 kb on - strand, within MPMX20_04740 at 85.014 kb on + strand, within MPMX20_04740 at 85.014 kb on + strand, within MPMX20_04740 at 85.040 kb on + strand, within MPMX20_04740 at 85.053 kb on - strand, within MPMX20_04740 at 85.071 kb on + strand, within MPMX20_04740 at 85.071 kb on + strand, within MPMX20_04740 at 85.081 kb on + strand, within MPMX20_04740 at 85.095 kb on - strand, within MPMX20_04740 at 85.128 kb on - strand, within MPMX20_04740 at 85.128 kb on - strand, within MPMX20_04740 at 85.128 kb on - strand, within MPMX20_04740 at 85.138 kb on - strand, within MPMX20_04740 at 85.156 kb on - strand, within MPMX20_04740 at 85.160 kb on + strand, within MPMX20_04740 at 85.165 kb on + strand, within MPMX20_04740 at 85.173 kb on - strand, within MPMX20_04740 at 85.184 kb on + strand, within MPMX20_04740 at 85.192 kb on - strand, within MPMX20_04740 at 85.251 kb on - strand, within MPMX20_04740 at 85.259 kb on + strand, within MPMX20_04740 at 85.265 kb on + strand, within MPMX20_04740 at 85.291 kb on - strand, within MPMX20_04740 at 85.311 kb on - strand, within MPMX20_04740 at 85.348 kb on + strand, within MPMX20_04740 at 85.355 kb on + strand, within MPMX20_04740 at 85.360 kb on + strand, within MPMX20_04740 at 85.360 kb on + strand, within MPMX20_04740 at 85.363 kb on - strand, within MPMX20_04740 at 85.404 kb on + strand, within MPMX20_04740 at 85.422 kb on + strand, within MPMX20_04740 at 85.566 kb on + strand at 85.566 kb on + strand at 85.566 kb on + strand at 85.566 kb on + strand at 85.566 kb on + strand at 85.566 kb on + strand at 85.568 kb on + strand at 85.568 kb on + strand at 85.568 kb on + strand at 85.568 kb on + strand at 85.568 kb on + strand at 85.574 kb on - strand at 85.574 kb on - strand at 85.574 kb on - strand at 85.574 kb on - strand at 85.574 kb on - strand at 85.574 kb on - strand at 85.574 kb on - strand at 85.574 kb on - strand at 85.574 kb on - strand at 85.576 kb on - strand at 85.576 kb on - strand at 85.576 kb on - strand at 85.576 kb on - strand at 85.586 kb on + strand at 85.591 kb on + strand at 85.592 kb on + strand at 85.592 kb on + strand at 85.592 kb on - strand at 85.594 kb on - strand at 85.602 kb on + strand at 85.625 kb on - strand at 85.706 kb on + strand at 85.730 kb on + strand at 85.741 kb on + strand at 85.741 kb on + strand at 85.747 kb on + strand at 85.752 kb on + strand at 85.764 kb on + strand, within MPMX20_04741 at 85.772 kb on - strand, within MPMX20_04741 at 85.772 kb on - strand, within MPMX20_04741 at 85.784 kb on - strand, within MPMX20_04741 at 85.822 kb on + strand, within MPMX20_04741 at 85.871 kb on + strand, within MPMX20_04741 at 85.903 kb on + strand, within MPMX20_04741 at 85.909 kb on + strand, within MPMX20_04741 at 85.909 kb on + strand, within MPMX20_04741 at 85.909 kb on + strand, within MPMX20_04741 at 85.912 kb on - strand, within MPMX20_04741 at 85.917 kb on - strand, within MPMX20_04741 at 85.917 kb on - strand, within MPMX20_04741 at 85.933 kb on - strand, within MPMX20_04741 at 85.964 kb on + strand, within MPMX20_04741 at 86.008 kb on + strand, within MPMX20_04741 at 86.016 kb on + strand, within MPMX20_04741 at 86.016 kb on + strand, within MPMX20_04741 at 86.024 kb on - strand, within MPMX20_04741 at 86.024 kb on - strand, within MPMX20_04741 at 86.027 kb on + strand, within MPMX20_04741 at 86.027 kb on + strand, within MPMX20_04741 at 86.035 kb on - strand, within MPMX20_04741 at 86.035 kb on - strand, within MPMX20_04741 at 86.035 kb on - strand, within MPMX20_04741 at 86.057 kb on + strand, within MPMX20_04741 at 86.057 kb on + strand, within MPMX20_04741 at 86.065 kb on - strand, within MPMX20_04741 at 86.072 kb on - strand, within MPMX20_04741 at 86.097 kb on + strand at 86.130 kb on + strand at 86.138 kb on - strand at 86.159 kb on - strand at 86.176 kb on + strand at 86.184 kb on - strand at 86.191 kb on + strand at 86.191 kb on + strand at 86.191 kb on + strand at 86.191 kb on + strand at 86.191 kb on + strand at 86.191 kb on + strand at 86.199 kb on - strand at 86.199 kb on - strand at 86.199 kb on - strand at 86.199 kb on - strand at 86.212 kb on + strand, within MPMX20_04742 at 86.217 kb on - strand, within MPMX20_04742 at 86.217 kb on - strand, within MPMX20_04742 at 86.217 kb on - strand, within MPMX20_04742 at 86.220 kb on - strand, within MPMX20_04742 at 86.227 kb on + strand, within MPMX20_04742 at 86.257 kb on + strand, within MPMX20_04742 at 86.257 kb on + strand, within MPMX20_04742 at 86.265 kb on - strand, within MPMX20_04742 at 86.265 kb on - strand, within MPMX20_04742 at 86.302 kb on - strand, within MPMX20_04742 at 86.306 kb on + strand, within MPMX20_04742 at 86.314 kb on - strand, within MPMX20_04742 at 86.361 kb on - strand, within MPMX20_04742 at 86.368 kb on + strand, within MPMX20_04742 at 86.371 kb on - strand, within MPMX20_04742 at 86.381 kb on - strand, within MPMX20_04742 at 86.383 kb on + strand, within MPMX20_04742 at 86.383 kb on + strand, within MPMX20_04742 at 86.383 kb on + strand, within MPMX20_04742 at 86.383 kb on + strand, within MPMX20_04742 at 86.391 kb on - strand, within MPMX20_04742 at 86.391 kb on - strand, within MPMX20_04742 at 86.391 kb on - strand, within MPMX20_04742 at 86.391 kb on - strand, within MPMX20_04742 at 86.391 kb on - strand, within MPMX20_04742 at 86.400 kb on + strand, within MPMX20_04742 at 86.416 kb on + strand, within MPMX20_04742 at 86.416 kb on + strand, within MPMX20_04742 at 86.416 kb on + strand, within MPMX20_04742 at 86.421 kb on + strand, within MPMX20_04742 at 86.421 kb on + strand, within MPMX20_04742 at 86.421 kb on + strand, within MPMX20_04742 at 86.421 kb on + strand, within MPMX20_04742 at 86.421 kb on + strand, within MPMX20_04742 at 86.424 kb on - strand, within MPMX20_04742 at 86.426 kb on + strand, within MPMX20_04742 at 86.426 kb on + strand, within MPMX20_04742 at 86.426 kb on + strand, within MPMX20_04742 at 86.426 kb on + strand, within MPMX20_04742 at 86.429 kb on - strand, within MPMX20_04742 at 86.429 kb on - strand, within MPMX20_04742 at 86.429 kb on - strand, within MPMX20_04742 at 86.489 kb on + strand, within MPMX20_04742 at 86.502 kb on - strand, within MPMX20_04742 at 86.502 kb on - strand, within MPMX20_04742 at 86.519 kb on + strand, within MPMX20_04742 at 86.524 kb on + strand, within MPMX20_04742
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 83,866 - +0.4 83,909 - MPMX20_04739 0.12 -2.4 83,928 + MPMX20_04739 0.15 -1.6 83,928 + MPMX20_04739 0.15 +2.1 83,944 + MPMX20_04739 0.17 +1.3 83,962 - MPMX20_04739 0.20 -0.9 83,974 + MPMX20_04739 0.22 +2.4 83,982 - MPMX20_04739 0.23 -2.1 84,060 - MPMX20_04739 0.34 +3.2 84,083 - MPMX20_04739 0.38 -2.1 84,154 + MPMX20_04739 0.48 +2.5 84,154 + MPMX20_04739 0.48 +1.6 84,161 - MPMX20_04739 0.49 +1.5 84,162 - MPMX20_04739 0.49 +1.1 84,162 - MPMX20_04739 0.49 +1.2 84,162 - MPMX20_04739 0.49 +0.3 84,178 + MPMX20_04739 0.52 +1.5 84,186 - MPMX20_04739 0.53 -1.9 84,275 + MPMX20_04739 0.66 -3.5 84,326 + MPMX20_04739 0.74 -3.1 84,333 + MPMX20_04739 0.75 +1.9 84,333 + MPMX20_04739 0.75 -2.7 84,334 - MPMX20_04739 0.75 -0.1 84,341 - MPMX20_04739 0.76 -1.4 84,382 + MPMX20_04739 0.82 +3.9 84,388 + MPMX20_04739 0.83 -3.1 84,396 - MPMX20_04739 0.84 -0.6 84,407 - MPMX20_04739 0.86 -0.2 84,479 + +2.0 84,487 - +2.1 84,487 - -4.2 84,502 - -1.6 84,576 + -2.2 84,576 + +0.9 84,584 - -1.6 84,685 - -3.4 84,706 + -2.7 84,714 + +1.1 84,714 - +2.2 84,714 - +0.8 84,714 - -1.9 84,722 + +0.6 84,722 - -1.8 84,723 + +1.5 84,732 - +3.3 84,750 + -3.0 84,758 - -1.7 84,798 - +1.3 84,798 - +0.0 84,806 + +1.5 84,814 - -2.1 84,814 - +1.0 84,816 + +0.5 84,836 - -2.1 84,873 + +1.4 84,883 + -2.3 84,904 - +1.8 84,956 - MPMX20_04740 0.14 -0.5 84,964 - MPMX20_04740 0.15 -2.6 84,992 - MPMX20_04740 0.19 +0.9 85,014 + MPMX20_04740 0.22 +2.9 85,014 + MPMX20_04740 0.22 +1.6 85,040 + MPMX20_04740 0.26 -2.4 85,053 - MPMX20_04740 0.28 +2.2 85,071 + MPMX20_04740 0.31 +0.7 85,071 + MPMX20_04740 0.31 +2.6 85,081 + MPMX20_04740 0.32 +2.6 85,095 - MPMX20_04740 0.35 +4.8 85,128 - MPMX20_04740 0.39 +0.4 85,128 - MPMX20_04740 0.39 -0.8 85,128 - MPMX20_04740 0.39 -3.2 85,138 - MPMX20_04740 0.41 +1.7 85,156 - MPMX20_04740 0.44 -3.3 85,160 + MPMX20_04740 0.44 -1.1 85,165 + MPMX20_04740 0.45 +1.7 85,173 - MPMX20_04740 0.46 -1.1 85,184 + MPMX20_04740 0.48 -3.0 85,192 - MPMX20_04740 0.49 +1.6 85,251 - MPMX20_04740 0.58 +3.1 85,259 + MPMX20_04740 0.59 +1.2 85,265 + MPMX20_04740 0.60 +2.1 85,291 - MPMX20_04740 0.64 +1.2 85,311 - MPMX20_04740 0.67 +0.7 85,348 + MPMX20_04740 0.72 -1.8 85,355 + MPMX20_04740 0.73 +0.1 85,360 + MPMX20_04740 0.74 +1.4 85,360 + MPMX20_04740 0.74 +2.9 85,363 - MPMX20_04740 0.74 +3.0 85,404 + MPMX20_04740 0.81 +1.5 85,422 + MPMX20_04740 0.83 +1.8 85,566 + +0.1 85,566 + +2.5 85,566 + -1.4 85,566 + -1.3 85,566 + -1.7 85,566 + -1.9 85,568 + +0.0 85,568 + -1.4 85,568 + +0.3 85,568 + +1.9 85,568 + -2.0 85,574 - +0.3 85,574 - -0.2 85,574 - +0.4 85,574 - +3.3 85,574 - +0.3 85,574 - -0.9 85,574 - -0.8 85,574 - +0.9 85,574 - -0.6 85,576 - +2.8 85,576 - +1.1 85,576 - -1.9 85,576 - +2.1 85,586 + -2.8 85,591 + -0.1 85,592 + -0.9 85,592 + -3.6 85,592 - +1.5 85,594 - -1.1 85,602 + +2.8 85,625 - +1.5 85,706 + +1.2 85,730 + -2.3 85,741 + -4.0 85,741 + -2.7 85,747 + +1.6 85,752 + -1.6 85,764 + MPMX20_04741 0.12 -0.9 85,772 - MPMX20_04741 0.14 +1.7 85,772 - MPMX20_04741 0.14 -1.6 85,784 - MPMX20_04741 0.17 -2.6 85,822 + MPMX20_04741 0.26 +1.2 85,871 + MPMX20_04741 0.37 +0.4 85,903 + MPMX20_04741 0.45 -2.3 85,909 + MPMX20_04741 0.46 -3.5 85,909 + MPMX20_04741 0.46 -1.7 85,909 + MPMX20_04741 0.46 -2.8 85,912 - MPMX20_04741 0.47 -1.6 85,917 - MPMX20_04741 0.48 -0.4 85,917 - MPMX20_04741 0.48 -2.6 85,933 - MPMX20_04741 0.52 +1.6 85,964 + MPMX20_04741 0.59 +2.4 86,008 + MPMX20_04741 0.70 +0.9 86,016 + MPMX20_04741 0.71 -0.8 86,016 + MPMX20_04741 0.71 -2.0 86,024 - MPMX20_04741 0.73 +1.4 86,024 - MPMX20_04741 0.73 -0.6 86,027 + MPMX20_04741 0.74 -1.1 86,027 + MPMX20_04741 0.74 +0.7 86,035 - MPMX20_04741 0.76 -1.9 86,035 - MPMX20_04741 0.76 +0.7 86,035 - MPMX20_04741 0.76 -2.0 86,057 + MPMX20_04741 0.81 -1.8 86,057 + MPMX20_04741 0.81 -2.7 86,065 - MPMX20_04741 0.83 -3.9 86,072 - MPMX20_04741 0.85 +0.4 86,097 + -1.4 86,130 + -1.9 86,138 - -3.6 86,159 - +1.7 86,176 + -1.1 86,184 - +0.2 86,191 + -2.8 86,191 + +1.8 86,191 + -0.7 86,191 + -0.4 86,191 + +0.3 86,191 + +0.3 86,199 - -2.4 86,199 - -3.3 86,199 - -1.3 86,199 - -0.7 86,212 + MPMX20_04742 0.11 -3.7 86,217 - MPMX20_04742 0.12 -2.3 86,217 - MPMX20_04742 0.12 -3.3 86,217 - MPMX20_04742 0.12 +0.9 86,220 - MPMX20_04742 0.12 +1.6 86,227 + MPMX20_04742 0.14 +2.0 86,257 + MPMX20_04742 0.18 -0.4 86,257 + MPMX20_04742 0.18 -1.1 86,265 - MPMX20_04742 0.19 -1.6 86,265 - MPMX20_04742 0.19 +0.1 86,302 - MPMX20_04742 0.25 +1.1 86,306 + MPMX20_04742 0.25 +2.6 86,314 - MPMX20_04742 0.26 -0.4 86,361 - MPMX20_04742 0.33 -2.2 86,368 + MPMX20_04742 0.35 -0.1 86,371 - MPMX20_04742 0.35 +0.7 86,381 - MPMX20_04742 0.36 -0.6 86,383 + MPMX20_04742 0.37 +2.2 86,383 + MPMX20_04742 0.37 -0.1 86,383 + MPMX20_04742 0.37 +1.7 86,383 + MPMX20_04742 0.37 -3.1 86,391 - MPMX20_04742 0.38 -4.5 86,391 - MPMX20_04742 0.38 +4.9 86,391 - MPMX20_04742 0.38 +4.3 86,391 - MPMX20_04742 0.38 -1.7 86,391 - MPMX20_04742 0.38 -0.2 86,400 + MPMX20_04742 0.39 -3.6 86,416 + MPMX20_04742 0.42 +1.1 86,416 + MPMX20_04742 0.42 -1.9 86,416 + MPMX20_04742 0.42 +0.4 86,421 + MPMX20_04742 0.42 -0.4 86,421 + MPMX20_04742 0.42 -2.4 86,421 + MPMX20_04742 0.42 -1.6 86,421 + MPMX20_04742 0.42 -3.4 86,421 + MPMX20_04742 0.42 -0.4 86,424 - MPMX20_04742 0.43 +0.5 86,426 + MPMX20_04742 0.43 -1.3 86,426 + MPMX20_04742 0.43 +0.8 86,426 + MPMX20_04742 0.43 +0.5 86,426 + MPMX20_04742 0.43 +1.7 86,429 - MPMX20_04742 0.44 +0.9 86,429 - MPMX20_04742 0.44 -3.1 86,429 - MPMX20_04742 0.44 -4.2 86,489 + MPMX20_04742 0.53 -3.1 86,502 - MPMX20_04742 0.54 -0.0 86,502 - MPMX20_04742 0.54 +3.5 86,519 + MPMX20_04742 0.57 -0.9 86,524 + MPMX20_04742 0.58 +0.3
Or see this region's nucleotide sequence