Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04739

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04736 and MPMX20_04737 are separated by 53 nucleotidesMPMX20_04737 and MPMX20_04738 are separated by 10 nucleotidesMPMX20_04738 and MPMX20_04739 overlap by 1 nucleotidesMPMX20_04739 and MPMX20_04740 are separated by 358 nucleotides MPMX20_04736: MPMX20_04736 - hypothetical protein, at 82,343 to 83,122 _04736 MPMX20_04737: MPMX20_04737 - hypothetical protein, at 83,176 to 83,595 _04737 MPMX20_04738: MPMX20_04738 - hypothetical protein, at 83,606 to 83,827 _04738 MPMX20_04739: MPMX20_04739 - DNA adenine methyltransferase YhdJ, at 83,827 to 84,504 _04739 MPMX20_04740: MPMX20_04740 - SOS response-associated protein YedK, at 84,863 to 85,534 _04740 Position (kb) 83 84 85Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 82.830 kb on + strand, within MPMX20_04736at 82.859 kb on - strand, within MPMX20_04736at 82.886 kb on + strand, within MPMX20_04736at 82.916 kb on - strand, within MPMX20_04736at 82.919 kb on - strand, within MPMX20_04736at 82.926 kb on - strand, within MPMX20_04736at 82.938 kb on + strand, within MPMX20_04736at 82.946 kb on - strand, within MPMX20_04736at 82.951 kb on - strand, within MPMX20_04736at 82.985 kb on + strand, within MPMX20_04736at 83.019 kb on + strand, within MPMX20_04736at 83.027 kb on - strand, within MPMX20_04736at 83.027 kb on - strand, within MPMX20_04736at 83.028 kb on - strand, within MPMX20_04736at 83.029 kb on + strand, within MPMX20_04736at 83.037 kb on - strand, within MPMX20_04736at 83.037 kb on - strand, within MPMX20_04736at 83.037 kb on - strand, within MPMX20_04736at 83.037 kb on - strand, within MPMX20_04736at 83.044 kb on + strand, within MPMX20_04736at 83.052 kb on - strandat 83.062 kb on - strandat 83.089 kb on + strandat 83.089 kb on + strandat 83.139 kb on - strandat 83.139 kb on - strandat 83.139 kb on - strandat 83.142 kb on + strandat 83.223 kb on + strand, within MPMX20_04737at 83.223 kb on + strand, within MPMX20_04737at 83.231 kb on + strand, within MPMX20_04737at 83.231 kb on - strand, within MPMX20_04737at 83.243 kb on + strand, within MPMX20_04737at 83.251 kb on - strand, within MPMX20_04737at 83.253 kb on + strand, within MPMX20_04737at 83.264 kb on + strand, within MPMX20_04737at 83.264 kb on + strand, within MPMX20_04737at 83.272 kb on - strand, within MPMX20_04737at 83.289 kb on + strand, within MPMX20_04737at 83.317 kb on - strand, within MPMX20_04737at 83.317 kb on - strand, within MPMX20_04737at 83.317 kb on - strand, within MPMX20_04737at 83.351 kb on + strand, within MPMX20_04737at 83.351 kb on + strand, within MPMX20_04737at 83.359 kb on - strand, within MPMX20_04737at 83.359 kb on - strand, within MPMX20_04737at 83.359 kb on - strand, within MPMX20_04737at 83.402 kb on - strand, within MPMX20_04737at 83.407 kb on + strand, within MPMX20_04737at 83.408 kb on - strand, within MPMX20_04737at 83.450 kb on + strand, within MPMX20_04737at 83.450 kb on + strand, within MPMX20_04737at 83.450 kb on + strand, within MPMX20_04737at 83.450 kb on + strand, within MPMX20_04737at 83.458 kb on - strand, within MPMX20_04737at 83.475 kb on + strand, within MPMX20_04737at 83.554 kb on - strandat 83.554 kb on - strandat 83.558 kb on + strandat 83.559 kb on - strandat 83.566 kb on - strandat 83.575 kb on - strandat 83.582 kb on - strandat 83.582 kb on - strandat 83.585 kb on + strandat 83.652 kb on + strand, within MPMX20_04738at 83.660 kb on - strand, within MPMX20_04738at 83.660 kb on - strand, within MPMX20_04738at 83.690 kb on + strand, within MPMX20_04738at 83.690 kb on + strand, within MPMX20_04738at 83.690 kb on + strand, within MPMX20_04738at 83.698 kb on - strand, within MPMX20_04738at 83.698 kb on - strand, within MPMX20_04738at 83.698 kb on - strand, within MPMX20_04738at 83.698 kb on - strand, within MPMX20_04738at 83.734 kb on + strand, within MPMX20_04738at 83.734 kb on + strand, within MPMX20_04738at 83.742 kb on - strand, within MPMX20_04738at 83.742 kb on - strand, within MPMX20_04738at 83.742 kb on - strand, within MPMX20_04738at 83.744 kb on + strand, within MPMX20_04738at 83.747 kb on - strand, within MPMX20_04738at 83.747 kb on - strand, within MPMX20_04738at 83.820 kb on - strandat 83.845 kb on + strandat 83.858 kb on + strandat 83.866 kb on - strandat 83.909 kb on - strand, within MPMX20_04739at 83.928 kb on + strand, within MPMX20_04739at 83.928 kb on + strand, within MPMX20_04739at 83.944 kb on + strand, within MPMX20_04739at 83.962 kb on - strand, within MPMX20_04739at 83.974 kb on + strand, within MPMX20_04739at 83.982 kb on - strand, within MPMX20_04739at 84.060 kb on - strand, within MPMX20_04739at 84.083 kb on - strand, within MPMX20_04739at 84.154 kb on + strand, within MPMX20_04739at 84.154 kb on + strand, within MPMX20_04739at 84.161 kb on - strand, within MPMX20_04739at 84.162 kb on - strand, within MPMX20_04739at 84.162 kb on - strand, within MPMX20_04739at 84.162 kb on - strand, within MPMX20_04739at 84.178 kb on + strand, within MPMX20_04739at 84.186 kb on - strand, within MPMX20_04739at 84.275 kb on + strand, within MPMX20_04739at 84.326 kb on + strand, within MPMX20_04739at 84.333 kb on + strand, within MPMX20_04739at 84.333 kb on + strand, within MPMX20_04739at 84.334 kb on - strand, within MPMX20_04739at 84.341 kb on - strand, within MPMX20_04739at 84.382 kb on + strand, within MPMX20_04739at 84.388 kb on + strand, within MPMX20_04739at 84.396 kb on - strand, within MPMX20_04739at 84.407 kb on - strand, within MPMX20_04739at 84.479 kb on + strandat 84.487 kb on - strandat 84.487 kb on - strandat 84.502 kb on - strandat 84.576 kb on + strandat 84.576 kb on + strandat 84.584 kb on - strandat 84.685 kb on - strandat 84.706 kb on + strandat 84.714 kb on + strandat 84.714 kb on - strandat 84.714 kb on - strandat 84.714 kb on - strandat 84.722 kb on + strandat 84.722 kb on - strandat 84.723 kb on + strandat 84.732 kb on - strandat 84.750 kb on + strandat 84.758 kb on - strandat 84.798 kb on - strandat 84.798 kb on - strandat 84.806 kb on + strandat 84.814 kb on - strandat 84.814 kb on - strandat 84.816 kb on + strandat 84.836 kb on - strandat 84.873 kb on + strandat 84.883 kb on + strandat 84.904 kb on - strandat 84.956 kb on - strand, within MPMX20_04740at 84.964 kb on - strand, within MPMX20_04740at 84.992 kb on - strand, within MPMX20_04740at 85.014 kb on + strand, within MPMX20_04740at 85.014 kb on + strand, within MPMX20_04740at 85.040 kb on + strand, within MPMX20_04740at 85.053 kb on - strand, within MPMX20_04740at 85.071 kb on + strand, within MPMX20_04740at 85.071 kb on + strand, within MPMX20_04740at 85.081 kb on + strand, within MPMX20_04740at 85.095 kb on - strand, within MPMX20_04740at 85.128 kb on - strand, within MPMX20_04740at 85.128 kb on - strand, within MPMX20_04740at 85.128 kb on - strand, within MPMX20_04740at 85.138 kb on - strand, within MPMX20_04740at 85.156 kb on - strand, within MPMX20_04740at 85.160 kb on + strand, within MPMX20_04740at 85.165 kb on + strand, within MPMX20_04740at 85.173 kb on - strand, within MPMX20_04740at 85.184 kb on + strand, within MPMX20_04740at 85.192 kb on - strand, within MPMX20_04740at 85.251 kb on - strand, within MPMX20_04740at 85.259 kb on + strand, within MPMX20_04740at 85.265 kb on + strand, within MPMX20_04740at 85.291 kb on - strand, within MPMX20_04740at 85.311 kb on - strand, within MPMX20_04740at 85.348 kb on + strand, within MPMX20_04740at 85.355 kb on + strand, within MPMX20_04740at 85.360 kb on + strand, within MPMX20_04740at 85.360 kb on + strand, within MPMX20_04740at 85.363 kb on - strand, within MPMX20_04740at 85.404 kb on + strand, within MPMX20_04740at 85.422 kb on + strand, within MPMX20_04740

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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82,830 + MPMX20_04736 0.62 +0.9
82,859 - MPMX20_04736 0.66 +1.9
82,886 + MPMX20_04736 0.70 -4.3
82,916 - MPMX20_04736 0.73 -1.2
82,919 - MPMX20_04736 0.74 +1.1
82,926 - MPMX20_04736 0.75 -2.7
82,938 + MPMX20_04736 0.76 -0.5
82,946 - MPMX20_04736 0.77 +1.9
82,951 - MPMX20_04736 0.78 -1.3
82,985 + MPMX20_04736 0.82 +1.0
83,019 + MPMX20_04736 0.87 +0.8
83,027 - MPMX20_04736 0.88 +1.6
83,027 - MPMX20_04736 0.88 +2.0
83,028 - MPMX20_04736 0.88 -3.1
83,029 + MPMX20_04736 0.88 -1.9
83,037 - MPMX20_04736 0.89 +0.7
83,037 - MPMX20_04736 0.89 +1.1
83,037 - MPMX20_04736 0.89 -4.1
83,037 - MPMX20_04736 0.89 +1.2
83,044 + MPMX20_04736 0.90 +0.3
83,052 - +3.7
83,062 - +3.8
83,089 + +1.7
83,089 + +2.1
83,139 - -1.7
83,139 - +0.3
83,139 - -3.6
83,142 + +1.2
83,223 + MPMX20_04737 0.11 +2.0
83,223 + MPMX20_04737 0.11 +2.7
83,231 + MPMX20_04737 0.13 -1.1
83,231 - MPMX20_04737 0.13 -0.1
83,243 + MPMX20_04737 0.16 -2.4
83,251 - MPMX20_04737 0.18 +1.2
83,253 + MPMX20_04737 0.18 -0.3
83,264 + MPMX20_04737 0.21 +0.3
83,264 + MPMX20_04737 0.21 -0.5
83,272 - MPMX20_04737 0.23 +2.9
83,289 + MPMX20_04737 0.27 -0.9
83,317 - MPMX20_04737 0.34 -1.2
83,317 - MPMX20_04737 0.34 -2.2
83,317 - MPMX20_04737 0.34 +2.2
83,351 + MPMX20_04737 0.42 +3.2
83,351 + MPMX20_04737 0.42 -1.3
83,359 - MPMX20_04737 0.44 -3.1
83,359 - MPMX20_04737 0.44 +0.9
83,359 - MPMX20_04737 0.44 +0.5
83,402 - MPMX20_04737 0.54 -0.7
83,407 + MPMX20_04737 0.55 +2.2
83,408 - MPMX20_04737 0.55 -2.2
83,450 + MPMX20_04737 0.65 -0.9
83,450 + MPMX20_04737 0.65 -1.4
83,450 + MPMX20_04737 0.65 +0.3
83,450 + MPMX20_04737 0.65 -0.1
83,458 - MPMX20_04737 0.67 -3.5
83,475 + MPMX20_04737 0.71 -4.3
83,554 - +1.6
83,554 - -1.0
83,558 + -1.1
83,559 - -0.9
83,566 - +2.3
83,575 - +1.8
83,582 - +1.5
83,582 - +1.4
83,585 + +1.6
83,652 + MPMX20_04738 0.21 -3.2
83,660 - MPMX20_04738 0.24 +0.8
83,660 - MPMX20_04738 0.24 +0.8
83,690 + MPMX20_04738 0.38 -1.4
83,690 + MPMX20_04738 0.38 +0.3
83,690 + MPMX20_04738 0.38 +0.1
83,698 - MPMX20_04738 0.41 -1.1
83,698 - MPMX20_04738 0.41 +1.7
83,698 - MPMX20_04738 0.41 -0.1
83,698 - MPMX20_04738 0.41 -0.1
83,734 + MPMX20_04738 0.58 -1.4
83,734 + MPMX20_04738 0.58 +3.1
83,742 - MPMX20_04738 0.61 +2.3
83,742 - MPMX20_04738 0.61 -2.0
83,742 - MPMX20_04738 0.61 -1.8
83,744 + MPMX20_04738 0.62 +0.9
83,747 - MPMX20_04738 0.64 -0.0
83,747 - MPMX20_04738 0.64 +2.5
83,820 - +0.4
83,845 + +2.2
83,858 + -1.1
83,866 - +0.4
83,909 - MPMX20_04739 0.12 -2.4
83,928 + MPMX20_04739 0.15 -1.6
83,928 + MPMX20_04739 0.15 +2.1
83,944 + MPMX20_04739 0.17 +1.3
83,962 - MPMX20_04739 0.20 -0.9
83,974 + MPMX20_04739 0.22 +2.4
83,982 - MPMX20_04739 0.23 -2.1
84,060 - MPMX20_04739 0.34 +3.2
84,083 - MPMX20_04739 0.38 -2.1
84,154 + MPMX20_04739 0.48 +2.5
84,154 + MPMX20_04739 0.48 +1.6
84,161 - MPMX20_04739 0.49 +1.5
84,162 - MPMX20_04739 0.49 +1.1
84,162 - MPMX20_04739 0.49 +1.2
84,162 - MPMX20_04739 0.49 +0.3
84,178 + MPMX20_04739 0.52 +1.5
84,186 - MPMX20_04739 0.53 -1.9
84,275 + MPMX20_04739 0.66 -3.5
84,326 + MPMX20_04739 0.74 -3.1
84,333 + MPMX20_04739 0.75 +1.9
84,333 + MPMX20_04739 0.75 -2.7
84,334 - MPMX20_04739 0.75 -0.1
84,341 - MPMX20_04739 0.76 -1.4
84,382 + MPMX20_04739 0.82 +3.9
84,388 + MPMX20_04739 0.83 -3.1
84,396 - MPMX20_04739 0.84 -0.6
84,407 - MPMX20_04739 0.86 -0.2
84,479 + +2.0
84,487 - +2.1
84,487 - -4.2
84,502 - -1.6
84,576 + -2.2
84,576 + +0.9
84,584 - -1.6
84,685 - -3.4
84,706 + -2.7
84,714 + +1.1
84,714 - +2.2
84,714 - +0.8
84,714 - -1.9
84,722 + +0.6
84,722 - -1.8
84,723 + +1.5
84,732 - +3.3
84,750 + -3.0
84,758 - -1.7
84,798 - +1.3
84,798 - +0.0
84,806 + +1.5
84,814 - -2.1
84,814 - +1.0
84,816 + +0.5
84,836 - -2.1
84,873 + +1.4
84,883 + -2.3
84,904 - +1.8
84,956 - MPMX20_04740 0.14 -0.5
84,964 - MPMX20_04740 0.15 -2.6
84,992 - MPMX20_04740 0.19 +0.9
85,014 + MPMX20_04740 0.22 +2.9
85,014 + MPMX20_04740 0.22 +1.6
85,040 + MPMX20_04740 0.26 -2.4
85,053 - MPMX20_04740 0.28 +2.2
85,071 + MPMX20_04740 0.31 +0.7
85,071 + MPMX20_04740 0.31 +2.6
85,081 + MPMX20_04740 0.32 +2.6
85,095 - MPMX20_04740 0.35 +4.8
85,128 - MPMX20_04740 0.39 +0.4
85,128 - MPMX20_04740 0.39 -0.8
85,128 - MPMX20_04740 0.39 -3.2
85,138 - MPMX20_04740 0.41 +1.7
85,156 - MPMX20_04740 0.44 -3.3
85,160 + MPMX20_04740 0.44 -1.1
85,165 + MPMX20_04740 0.45 +1.7
85,173 - MPMX20_04740 0.46 -1.1
85,184 + MPMX20_04740 0.48 -3.0
85,192 - MPMX20_04740 0.49 +1.6
85,251 - MPMX20_04740 0.58 +3.1
85,259 + MPMX20_04740 0.59 +1.2
85,265 + MPMX20_04740 0.60 +2.1
85,291 - MPMX20_04740 0.64 +1.2
85,311 - MPMX20_04740 0.67 +0.7
85,348 + MPMX20_04740 0.72 -1.8
85,355 + MPMX20_04740 0.73 +0.1
85,360 + MPMX20_04740 0.74 +1.4
85,360 + MPMX20_04740 0.74 +2.9
85,363 - MPMX20_04740 0.74 +3.0
85,404 + MPMX20_04740 0.81 +1.5
85,422 + MPMX20_04740 0.83 +1.8

Or see this region's nucleotide sequence