Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04599

Experiment: octanoate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_04598 and MPMX20_04599 are separated by 188 nucleotidesMPMX20_04599 and MPMX20_04600 are separated by 578 nucleotides MPMX20_04598: MPMX20_04598 - Oxygen-independent coproporphyrinogen III oxidase, at 4,813,544 to 4,814,917 _04598 MPMX20_04599: MPMX20_04599 - Der GTPase-activating protein YihI, at 4,815,106 to 4,815,621 _04599 MPMX20_04600: MPMX20_04600 - putative GTP-binding protein EngB, at 4,816,200 to 4,816,829 _04600 Position (kb) 4815 4816Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4814.131 kb on - strand, within MPMX20_04598at 4814.258 kb on + strand, within MPMX20_04598at 4814.263 kb on - strand, within MPMX20_04598at 4814.265 kb on - strand, within MPMX20_04598at 4814.305 kb on + strand, within MPMX20_04598at 4814.305 kb on + strand, within MPMX20_04598at 4814.313 kb on - strand, within MPMX20_04598at 4814.313 kb on - strand, within MPMX20_04598at 4814.313 kb on - strand, within MPMX20_04598at 4814.409 kb on + strand, within MPMX20_04598at 4814.459 kb on - strand, within MPMX20_04598at 4814.589 kb on - strand, within MPMX20_04598at 4814.726 kb on - strand, within MPMX20_04598at 4814.738 kb on - strand, within MPMX20_04598at 4814.777 kb on + strand, within MPMX20_04598at 4814.835 kb on + strandat 4814.846 kb on - strandat 4814.847 kb on - strandat 4814.855 kb on - strandat 4814.908 kb on + strandat 4814.916 kb on - strandat 4814.917 kb on + strandat 4814.931 kb on - strandat 4815.078 kb on + strandat 4815.078 kb on + strandat 4815.176 kb on + strand, within MPMX20_04599at 4815.176 kb on + strand, within MPMX20_04599at 4815.184 kb on - strand, within MPMX20_04599at 4815.184 kb on - strand, within MPMX20_04599at 4815.186 kb on + strand, within MPMX20_04599at 4815.225 kb on - strand, within MPMX20_04599at 4815.233 kb on + strand, within MPMX20_04599at 4815.233 kb on + strand, within MPMX20_04599at 4815.233 kb on + strand, within MPMX20_04599at 4815.241 kb on - strand, within MPMX20_04599at 4815.241 kb on - strand, within MPMX20_04599at 4815.246 kb on + strand, within MPMX20_04599at 4815.268 kb on - strand, within MPMX20_04599at 4815.270 kb on + strand, within MPMX20_04599at 4815.278 kb on - strand, within MPMX20_04599at 4815.278 kb on - strand, within MPMX20_04599at 4815.490 kb on + strand, within MPMX20_04599at 4815.498 kb on - strand, within MPMX20_04599at 4815.498 kb on - strand, within MPMX20_04599at 4815.586 kb on + strandat 4815.651 kb on + strandat 4815.651 kb on + strandat 4815.651 kb on + strandat 4815.659 kb on - strandat 4815.659 kb on - strandat 4815.659 kb on - strandat 4815.746 kb on + strandat 4815.746 kb on + strandat 4815.754 kb on - strandat 4815.792 kb on + strandat 4815.800 kb on - strandat 4815.813 kb on + strandat 4815.884 kb on + strandat 4815.891 kb on + strandat 4815.938 kb on + strandat 4815.938 kb on + strandat 4815.940 kb on - strandat 4815.944 kb on + strandat 4815.947 kb on - strandat 4815.947 kb on - strandat 4815.947 kb on - strandat 4816.087 kb on - strandat 4816.108 kb on + strandat 4816.109 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
remove
4,814,131 - MPMX20_04598 0.43 +0.6
4,814,258 + MPMX20_04598 0.52 -3.7
4,814,263 - MPMX20_04598 0.52 +0.6
4,814,265 - MPMX20_04598 0.52 +0.4
4,814,305 + MPMX20_04598 0.55 -4.3
4,814,305 + MPMX20_04598 0.55 +0.7
4,814,313 - MPMX20_04598 0.56 -4.4
4,814,313 - MPMX20_04598 0.56 -3.2
4,814,313 - MPMX20_04598 0.56 -3.4
4,814,409 + MPMX20_04598 0.63 -2.6
4,814,459 - MPMX20_04598 0.67 -3.1
4,814,589 - MPMX20_04598 0.76 -3.1
4,814,726 - MPMX20_04598 0.86 -3.6
4,814,738 - MPMX20_04598 0.87 -1.0
4,814,777 + MPMX20_04598 0.90 +2.2
4,814,835 + -3.5
4,814,846 - +1.9
4,814,847 - -0.0
4,814,855 - -0.9
4,814,908 + +0.2
4,814,916 - -4.1
4,814,917 + +2.0
4,814,931 - -1.8
4,815,078 + -3.4
4,815,078 + -3.4
4,815,176 + MPMX20_04599 0.14 +1.4
4,815,176 + MPMX20_04599 0.14 +2.3
4,815,184 - MPMX20_04599 0.15 -1.7
4,815,184 - MPMX20_04599 0.15 -1.9
4,815,186 + MPMX20_04599 0.16 -3.7
4,815,225 - MPMX20_04599 0.23 +1.8
4,815,233 + MPMX20_04599 0.25 +2.1
4,815,233 + MPMX20_04599 0.25 +1.8
4,815,233 + MPMX20_04599 0.25 +1.4
4,815,241 - MPMX20_04599 0.26 -0.9
4,815,241 - MPMX20_04599 0.26 +2.0
4,815,246 + MPMX20_04599 0.27 +2.2
4,815,268 - MPMX20_04599 0.31 +1.6
4,815,270 + MPMX20_04599 0.32 -2.1
4,815,278 - MPMX20_04599 0.33 +1.2
4,815,278 - MPMX20_04599 0.33 -3.2
4,815,490 + MPMX20_04599 0.74 -2.0
4,815,498 - MPMX20_04599 0.76 +0.5
4,815,498 - MPMX20_04599 0.76 +1.9
4,815,586 + +1.8
4,815,651 + -2.3
4,815,651 + +0.8
4,815,651 + -3.1
4,815,659 - +1.7
4,815,659 - +3.0
4,815,659 - -1.6
4,815,746 + -0.4
4,815,746 + +0.3
4,815,754 - -1.3
4,815,792 + -0.2
4,815,800 - +0.6
4,815,813 + -0.1
4,815,884 + -0.0
4,815,891 + -0.3
4,815,938 + -0.9
4,815,938 + +3.1
4,815,940 - -0.9
4,815,944 + -1.7
4,815,947 - +0.6
4,815,947 - +0.3
4,815,947 - +1.6
4,816,087 - -0.0
4,816,108 + -2.6
4,816,109 + +0.7

Or see this region's nucleotide sequence