Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04505 and MPMX20_04506 are separated by 97 nucleotides MPMX20_04506 and MPMX20_04507 are separated by 53 nucleotides MPMX20_04507 and MPMX20_04508 are separated by 58 nucleotides MPMX20_04508 and MPMX20_04509 are separated by 67 nucleotides
MPMX20_04505: MPMX20_04505 - HTH-type transcriptional regulator HdfR, at 4,713,565 to 4,714,386
_04505
MPMX20_04506: MPMX20_04506 - tRNA-Trp, at 4,714,484 to 4,714,559
_04506
MPMX20_04507: MPMX20_04507 - tRNA-Asp, at 4,714,613 to 4,714,689
_04507
MPMX20_04508: MPMX20_04508 - 5S ribosomal RNA, at 4,714,748 to 4,714,858
_04508
MPMX20_04509: MPMX20_04509 - 23S ribosomal RNA, at 4,714,926 to 4,717,829
_04509
Position (kb) 4714
4715 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4713.491 kb on + strand at 4713.497 kb on - strand at 4713.512 kb on + strand at 4713.635 kb on + strand at 4713.643 kb on - strand at 4713.643 kb on - strand at 4713.725 kb on + strand, within MPMX20_04505 at 4713.733 kb on - strand, within MPMX20_04505 at 4713.733 kb on - strand, within MPMX20_04505 at 4713.759 kb on + strand, within MPMX20_04505 at 4713.790 kb on - strand, within MPMX20_04505 at 4713.800 kb on + strand, within MPMX20_04505 at 4713.818 kb on + strand, within MPMX20_04505 at 4713.824 kb on - strand, within MPMX20_04505 at 4713.826 kb on - strand, within MPMX20_04505 at 4713.826 kb on - strand, within MPMX20_04505 at 4713.826 kb on - strand, within MPMX20_04505 at 4713.847 kb on - strand, within MPMX20_04505 at 4713.894 kb on + strand, within MPMX20_04505 at 4713.894 kb on + strand, within MPMX20_04505 at 4713.894 kb on + strand, within MPMX20_04505 at 4713.894 kb on + strand, within MPMX20_04505 at 4713.894 kb on + strand, within MPMX20_04505 at 4713.894 kb on + strand, within MPMX20_04505 at 4713.894 kb on + strand, within MPMX20_04505 at 4713.894 kb on + strand, within MPMX20_04505 at 4713.902 kb on - strand, within MPMX20_04505 at 4713.902 kb on - strand, within MPMX20_04505 at 4713.902 kb on - strand, within MPMX20_04505 at 4713.902 kb on - strand, within MPMX20_04505 at 4713.902 kb on - strand, within MPMX20_04505 at 4713.998 kb on - strand, within MPMX20_04505 at 4714.044 kb on + strand, within MPMX20_04505 at 4714.044 kb on + strand, within MPMX20_04505 at 4714.105 kb on + strand, within MPMX20_04505 at 4714.184 kb on + strand, within MPMX20_04505 at 4714.207 kb on - strand, within MPMX20_04505 at 4714.207 kb on - strand, within MPMX20_04505 at 4714.248 kb on - strand, within MPMX20_04505 at 4714.279 kb on - strand, within MPMX20_04505 at 4714.297 kb on - strand, within MPMX20_04505 at 4714.308 kb on + strand at 4714.316 kb on - strand at 4714.417 kb on + strand at 4714.425 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 4,713,491 + +1.7 4,713,497 - -1.2 4,713,512 + +2.3 4,713,635 + +1.6 4,713,643 - -1.6 4,713,643 - +2.8 4,713,725 + MPMX20_04505 0.19 -2.5 4,713,733 - MPMX20_04505 0.20 +0.9 4,713,733 - MPMX20_04505 0.20 -1.9 4,713,759 + MPMX20_04505 0.24 +1.2 4,713,790 - MPMX20_04505 0.27 -2.7 4,713,800 + MPMX20_04505 0.29 -1.4 4,713,818 + MPMX20_04505 0.31 +2.7 4,713,824 - MPMX20_04505 0.32 +2.8 4,713,826 - MPMX20_04505 0.32 +1.2 4,713,826 - MPMX20_04505 0.32 +3.1 4,713,826 - MPMX20_04505 0.32 -2.6 4,713,847 - MPMX20_04505 0.34 +1.0 4,713,894 + MPMX20_04505 0.40 -2.7 4,713,894 + MPMX20_04505 0.40 -0.2 4,713,894 + MPMX20_04505 0.40 -1.6 4,713,894 + MPMX20_04505 0.40 -2.9 4,713,894 + MPMX20_04505 0.40 +0.3 4,713,894 + MPMX20_04505 0.40 -1.8 4,713,894 + MPMX20_04505 0.40 +0.3 4,713,894 + MPMX20_04505 0.40 -2.3 4,713,902 - MPMX20_04505 0.41 -2.2 4,713,902 - MPMX20_04505 0.41 -1.6 4,713,902 - MPMX20_04505 0.41 -2.3 4,713,902 - MPMX20_04505 0.41 +0.8 4,713,902 - MPMX20_04505 0.41 -2.1 4,713,998 - MPMX20_04505 0.53 -2.7 4,714,044 + MPMX20_04505 0.58 -1.3 4,714,044 + MPMX20_04505 0.58 +2.3 4,714,105 + MPMX20_04505 0.66 +0.2 4,714,184 + MPMX20_04505 0.75 +1.5 4,714,207 - MPMX20_04505 0.78 -1.6 4,714,207 - MPMX20_04505 0.78 +0.3 4,714,248 - MPMX20_04505 0.83 +0.5 4,714,279 - MPMX20_04505 0.87 -1.7 4,714,297 - MPMX20_04505 0.89 +2.1 4,714,308 + +0.6 4,714,316 - +0.3 4,714,417 + +0.5 4,714,425 - -2.0
Or see this region's nucleotide sequence