Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04344

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04342 and MPMX20_04343 overlap by 17 nucleotidesMPMX20_04343 and MPMX20_04344 are separated by 47 nucleotidesMPMX20_04344 and MPMX20_04345 are separated by 129 nucleotidesMPMX20_04345 and MPMX20_04346 are separated by 76 nucleotides MPMX20_04342: MPMX20_04342 - Ribosomal RNA small subunit methyltransferase D, at 4,537,545 to 4,538,147 _04342 MPMX20_04343: MPMX20_04343 - hypothetical protein, at 4,538,131 to 4,538,412 _04343 MPMX20_04344: MPMX20_04344 - hypothetical protein, at 4,538,460 to 4,538,819 _04344 MPMX20_04345: MPMX20_04345 - hypothetical protein, at 4,538,949 to 4,539,575 _04345 MPMX20_04346: MPMX20_04346 - Zinc/cadmium/lead-transporting P-type ATPase, at 4,539,652 to 4,541,838 _04346 Position (kb) 4538 4539Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 4537.483 kb on - strandat 4537.483 kb on - strandat 4537.562 kb on - strandat 4537.570 kb on - strandat 4537.630 kb on + strand, within MPMX20_04342at 4537.630 kb on + strand, within MPMX20_04342at 4537.631 kb on + strand, within MPMX20_04342at 4537.638 kb on - strand, within MPMX20_04342at 4537.638 kb on - strand, within MPMX20_04342at 4537.638 kb on - strand, within MPMX20_04342at 4537.638 kb on - strand, within MPMX20_04342at 4537.638 kb on - strand, within MPMX20_04342at 4537.638 kb on - strand, within MPMX20_04342at 4537.647 kb on + strand, within MPMX20_04342at 4537.647 kb on + strand, within MPMX20_04342at 4537.695 kb on - strand, within MPMX20_04342at 4537.698 kb on - strand, within MPMX20_04342at 4537.720 kb on + strand, within MPMX20_04342at 4537.720 kb on + strand, within MPMX20_04342at 4537.744 kb on + strand, within MPMX20_04342at 4537.744 kb on + strand, within MPMX20_04342at 4537.801 kb on + strand, within MPMX20_04342at 4537.804 kb on - strand, within MPMX20_04342at 4537.806 kb on + strand, within MPMX20_04342at 4537.885 kb on - strand, within MPMX20_04342at 4537.944 kb on - strand, within MPMX20_04342at 4538.022 kb on + strand, within MPMX20_04342at 4538.058 kb on + strand, within MPMX20_04342at 4538.058 kb on + strand, within MPMX20_04342at 4538.066 kb on - strand, within MPMX20_04342at 4538.122 kb on - strandat 4538.198 kb on - strand, within MPMX20_04343at 4538.229 kb on - strand, within MPMX20_04343at 4538.242 kb on + strand, within MPMX20_04343at 4538.242 kb on + strand, within MPMX20_04343at 4538.250 kb on - strand, within MPMX20_04343at 4538.250 kb on - strand, within MPMX20_04343at 4538.301 kb on + strand, within MPMX20_04343at 4538.301 kb on + strand, within MPMX20_04343at 4538.376 kb on - strand, within MPMX20_04343at 4538.378 kb on - strand, within MPMX20_04343at 4538.423 kb on + strandat 4538.429 kb on + strandat 4538.478 kb on - strandat 4538.478 kb on - strandat 4538.596 kb on - strand, within MPMX20_04344at 4538.663 kb on + strand, within MPMX20_04344at 4538.690 kb on - strand, within MPMX20_04344at 4538.901 kb on - strandat 4538.941 kb on - strandat 4538.987 kb on + strandat 4538.987 kb on + strandat 4538.995 kb on - strandat 4538.995 kb on - strandat 4538.995 kb on - strandat 4538.995 kb on - strandat 4538.995 kb on - strandat 4538.995 kb on - strandat 4538.995 kb on - strandat 4538.995 kb on - strandat 4538.995 kb on - strandat 4538.997 kb on + strandat 4539.084 kb on + strand, within MPMX20_04345at 4539.089 kb on + strand, within MPMX20_04345at 4539.123 kb on + strand, within MPMX20_04345at 4539.125 kb on + strand, within MPMX20_04345at 4539.147 kb on + strand, within MPMX20_04345at 4539.148 kb on + strand, within MPMX20_04345at 4539.148 kb on + strand, within MPMX20_04345at 4539.156 kb on - strand, within MPMX20_04345at 4539.156 kb on - strand, within MPMX20_04345at 4539.156 kb on - strand, within MPMX20_04345at 4539.176 kb on + strand, within MPMX20_04345at 4539.184 kb on - strand, within MPMX20_04345at 4539.220 kb on - strand, within MPMX20_04345at 4539.281 kb on + strand, within MPMX20_04345at 4539.304 kb on - strand, within MPMX20_04345at 4539.479 kb on - strand, within MPMX20_04345at 4539.553 kb on - strandat 4539.614 kb on - strandat 4539.787 kb on + strandat 4539.789 kb on + strandat 4539.811 kb on + strandat 4539.819 kb on - strandat 4539.819 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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4,537,483 - -0.1
4,537,483 - +0.2
4,537,562 - +0.1
4,537,570 - +1.1
4,537,630 + MPMX20_04342 0.14 -0.4
4,537,630 + MPMX20_04342 0.14 -0.6
4,537,631 + MPMX20_04342 0.14 -4.3
4,537,638 - MPMX20_04342 0.15 -3.6
4,537,638 - MPMX20_04342 0.15 -3.4
4,537,638 - MPMX20_04342 0.15 +1.1
4,537,638 - MPMX20_04342 0.15 +1.8
4,537,638 - MPMX20_04342 0.15 -2.3
4,537,638 - MPMX20_04342 0.15 -1.2
4,537,647 + MPMX20_04342 0.17 -1.9
4,537,647 + MPMX20_04342 0.17 +1.5
4,537,695 - MPMX20_04342 0.25 -2.0
4,537,698 - MPMX20_04342 0.25 -1.8
4,537,720 + MPMX20_04342 0.29 -1.7
4,537,720 + MPMX20_04342 0.29 -2.8
4,537,744 + MPMX20_04342 0.33 +1.5
4,537,744 + MPMX20_04342 0.33 -0.7
4,537,801 + MPMX20_04342 0.42 -0.9
4,537,804 - MPMX20_04342 0.43 -1.4
4,537,806 + MPMX20_04342 0.43 -1.3
4,537,885 - MPMX20_04342 0.56 +0.9
4,537,944 - MPMX20_04342 0.66 +1.3
4,538,022 + MPMX20_04342 0.79 -0.1
4,538,058 + MPMX20_04342 0.85 +4.0
4,538,058 + MPMX20_04342 0.85 +0.3
4,538,066 - MPMX20_04342 0.86 -1.8
4,538,122 - -0.5
4,538,198 - MPMX20_04343 0.24 +1.7
4,538,229 - MPMX20_04343 0.35 +1.8
4,538,242 + MPMX20_04343 0.39 +1.7
4,538,242 + MPMX20_04343 0.39 -0.4
4,538,250 - MPMX20_04343 0.42 +4.6
4,538,250 - MPMX20_04343 0.42 +2.2
4,538,301 + MPMX20_04343 0.60 -0.3
4,538,301 + MPMX20_04343 0.60 -2.1
4,538,376 - MPMX20_04343 0.87 -1.0
4,538,378 - MPMX20_04343 0.88 +0.0
4,538,423 + -3.5
4,538,429 + +0.5
4,538,478 - -0.6
4,538,478 - +0.7
4,538,596 - MPMX20_04344 0.38 -2.2
4,538,663 + MPMX20_04344 0.56 -1.3
4,538,690 - MPMX20_04344 0.64 +0.2
4,538,901 - -0.5
4,538,941 - +0.6
4,538,987 + +3.1
4,538,987 + -3.7
4,538,995 - +1.6
4,538,995 - -4.1
4,538,995 - -1.4
4,538,995 - +1.2
4,538,995 - -1.5
4,538,995 - -0.3
4,538,995 - -3.1
4,538,995 - -2.5
4,538,995 - -3.4
4,538,997 + -0.9
4,539,084 + MPMX20_04345 0.22 -1.9
4,539,089 + MPMX20_04345 0.22 +2.5
4,539,123 + MPMX20_04345 0.28 -3.0
4,539,125 + MPMX20_04345 0.28 -0.8
4,539,147 + MPMX20_04345 0.32 +1.4
4,539,148 + MPMX20_04345 0.32 +2.4
4,539,148 + MPMX20_04345 0.32 +2.1
4,539,156 - MPMX20_04345 0.33 -2.9
4,539,156 - MPMX20_04345 0.33 -3.3
4,539,156 - MPMX20_04345 0.33 -2.9
4,539,176 + MPMX20_04345 0.36 -2.2
4,539,184 - MPMX20_04345 0.37 -2.5
4,539,220 - MPMX20_04345 0.43 +1.3
4,539,281 + MPMX20_04345 0.53 -0.5
4,539,304 - MPMX20_04345 0.57 +1.1
4,539,479 - MPMX20_04345 0.85 +0.7
4,539,553 - +0.7
4,539,614 - +0.1
4,539,787 + -0.4
4,539,789 + +0.7
4,539,811 + -1.9
4,539,819 - +1.7
4,539,819 - -2.7

Or see this region's nucleotide sequence