Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04323 and MPMX20_04324 are separated by 124 nucleotides MPMX20_04324 and MPMX20_04325 overlap by 20 nucleotides MPMX20_04325 and MPMX20_04326 overlap by 4 nucleotides
MPMX20_04323: MPMX20_04323 - Glutathione hydrolase proenzyme, at 4,517,287 to 4,519,032
_04323
MPMX20_04324: MPMX20_04324 - putative protein YhhA, at 4,519,157 to 4,519,543
_04324
MPMX20_04325: MPMX20_04325 - Glycerophosphodiester phosphodiesterase, cytoplasmic, at 4,519,524 to 4,520,273
_04325
MPMX20_04326: MPMX20_04326 - sn-glycerol-3-phosphate import ATP-binding protein UgpC, at 4,520,270 to 4,521,340
_04326
Position (kb)
4519
4520
4521 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 4518.680 kb on - strand, within MPMX20_04323 at 4518.780 kb on - strand, within MPMX20_04323 at 4518.791 kb on - strand, within MPMX20_04323 at 4518.816 kb on + strand, within MPMX20_04323 at 4518.849 kb on + strand, within MPMX20_04323 at 4518.878 kb on + strand at 4518.878 kb on + strand at 4518.878 kb on + strand at 4518.883 kb on + strand at 4518.886 kb on - strand at 4518.886 kb on - strand at 4518.974 kb on - strand at 4518.999 kb on + strand at 4518.999 kb on + strand at 4519.007 kb on - strand at 4519.007 kb on - strand at 4519.067 kb on + strand at 4519.068 kb on - strand at 4519.075 kb on - strand at 4519.078 kb on + strand at 4519.078 kb on + strand at 4519.078 kb on + strand at 4519.131 kb on - strand at 4519.131 kb on - strand at 4519.225 kb on + strand, within MPMX20_04324 at 4519.230 kb on + strand, within MPMX20_04324 at 4519.230 kb on + strand, within MPMX20_04324 at 4519.233 kb on - strand, within MPMX20_04324 at 4519.256 kb on - strand, within MPMX20_04324 at 4519.339 kb on + strand, within MPMX20_04324 at 4519.378 kb on + strand, within MPMX20_04324 at 4519.397 kb on + strand, within MPMX20_04324 at 4519.397 kb on + strand, within MPMX20_04324 at 4519.403 kb on + strand, within MPMX20_04324 at 4519.440 kb on + strand, within MPMX20_04324 at 4519.503 kb on - strand, within MPMX20_04324 at 4519.530 kb on - strand at 4519.591 kb on + strand at 4519.633 kb on + strand, within MPMX20_04325 at 4519.641 kb on - strand, within MPMX20_04325 at 4519.641 kb on - strand, within MPMX20_04325 at 4519.641 kb on - strand, within MPMX20_04325 at 4519.692 kb on - strand, within MPMX20_04325 at 4519.696 kb on + strand, within MPMX20_04325 at 4519.742 kb on - strand, within MPMX20_04325 at 4519.747 kb on - strand, within MPMX20_04325 at 4519.747 kb on - strand, within MPMX20_04325 at 4519.852 kb on - strand, within MPMX20_04325 at 4519.885 kb on - strand, within MPMX20_04325 at 4519.951 kb on - strand, within MPMX20_04325 at 4520.002 kb on + strand, within MPMX20_04325 at 4520.002 kb on + strand, within MPMX20_04325 at 4520.002 kb on + strand, within MPMX20_04325 at 4520.089 kb on - strand, within MPMX20_04325 at 4520.094 kb on + strand, within MPMX20_04325 at 4520.230 kb on - strand at 4520.286 kb on - strand at 4520.346 kb on + strand at 4520.346 kb on + strand at 4520.346 kb on + strand at 4520.354 kb on - strand at 4520.354 kb on - strand at 4520.354 kb on - strand at 4520.394 kb on + strand, within MPMX20_04326 at 4520.421 kb on + strand, within MPMX20_04326 at 4520.431 kb on + strand, within MPMX20_04326 at 4520.442 kb on + strand, within MPMX20_04326 at 4520.471 kb on - strand, within MPMX20_04326 at 4520.478 kb on - strand, within MPMX20_04326 at 4520.479 kb on - strand, within MPMX20_04326 at 4520.565 kb on - strand, within MPMX20_04326 at 4520.734 kb on + strand, within MPMX20_04326 at 4520.742 kb on - strand, within MPMX20_04326 at 4520.812 kb on + strand, within MPMX20_04326 at 4520.868 kb on + strand, within MPMX20_04326 at 4520.878 kb on + strand, within MPMX20_04326 at 4520.924 kb on - strand, within MPMX20_04326 at 4520.924 kb on - strand, within MPMX20_04326 at 4520.924 kb on - strand, within MPMX20_04326 at 4520.924 kb on - strand, within MPMX20_04326 at 4520.938 kb on + strand, within MPMX20_04326 at 4520.971 kb on + strand, within MPMX20_04326 at 4521.119 kb on - strand, within MPMX20_04326 at 4521.132 kb on - strand, within MPMX20_04326 at 4521.170 kb on + strand, within MPMX20_04326 at 4521.223 kb on - strand, within MPMX20_04326
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 4,518,680 - MPMX20_04323 0.80 +0.0 4,518,780 - MPMX20_04323 0.86 +2.8 4,518,791 - MPMX20_04323 0.86 +2.4 4,518,816 + MPMX20_04323 0.88 +2.9 4,518,849 + MPMX20_04323 0.89 +4.2 4,518,878 + -0.3 4,518,878 + +1.6 4,518,878 + +0.2 4,518,883 + +0.5 4,518,886 - -4.0 4,518,886 - -2.2 4,518,974 - +1.4 4,518,999 + -0.3 4,518,999 + +1.8 4,519,007 - -1.4 4,519,007 - +1.5 4,519,067 + +0.2 4,519,068 - -0.7 4,519,075 - -2.9 4,519,078 + -0.9 4,519,078 + -1.5 4,519,078 + +2.6 4,519,131 - +1.6 4,519,131 - -1.7 4,519,225 + MPMX20_04324 0.18 -1.9 4,519,230 + MPMX20_04324 0.19 -2.5 4,519,230 + MPMX20_04324 0.19 -2.1 4,519,233 - MPMX20_04324 0.20 +1.0 4,519,256 - MPMX20_04324 0.26 -4.0 4,519,339 + MPMX20_04324 0.47 +1.9 4,519,378 + MPMX20_04324 0.57 -0.3 4,519,397 + MPMX20_04324 0.62 +1.3 4,519,397 + MPMX20_04324 0.62 -2.0 4,519,403 + MPMX20_04324 0.64 -2.4 4,519,440 + MPMX20_04324 0.73 +0.5 4,519,503 - MPMX20_04324 0.89 +1.5 4,519,530 - +1.1 4,519,591 + -1.7 4,519,633 + MPMX20_04325 0.15 +0.0 4,519,641 - MPMX20_04325 0.16 +4.2 4,519,641 - MPMX20_04325 0.16 -3.5 4,519,641 - MPMX20_04325 0.16 -0.7 4,519,692 - MPMX20_04325 0.22 -2.0 4,519,696 + MPMX20_04325 0.23 +2.1 4,519,742 - MPMX20_04325 0.29 -2.2 4,519,747 - MPMX20_04325 0.30 -2.9 4,519,747 - MPMX20_04325 0.30 +2.0 4,519,852 - MPMX20_04325 0.44 +1.5 4,519,885 - MPMX20_04325 0.48 +0.6 4,519,951 - MPMX20_04325 0.57 -2.3 4,520,002 + MPMX20_04325 0.64 +0.7 4,520,002 + MPMX20_04325 0.64 -3.3 4,520,002 + MPMX20_04325 0.64 +1.6 4,520,089 - MPMX20_04325 0.75 -0.1 4,520,094 + MPMX20_04325 0.76 -1.8 4,520,230 - -0.4 4,520,286 - -1.7 4,520,346 + +1.3 4,520,346 + +0.8 4,520,346 + -1.2 4,520,354 - +1.5 4,520,354 - +2.4 4,520,354 - -0.0 4,520,394 + MPMX20_04326 0.12 -2.1 4,520,421 + MPMX20_04326 0.14 +1.9 4,520,431 + MPMX20_04326 0.15 -3.1 4,520,442 + MPMX20_04326 0.16 -0.8 4,520,471 - MPMX20_04326 0.19 -0.5 4,520,478 - MPMX20_04326 0.19 +0.7 4,520,479 - MPMX20_04326 0.20 -1.3 4,520,565 - MPMX20_04326 0.28 -1.5 4,520,734 + MPMX20_04326 0.43 -0.4 4,520,742 - MPMX20_04326 0.44 -0.8 4,520,812 + MPMX20_04326 0.51 -0.7 4,520,868 + MPMX20_04326 0.56 -0.3 4,520,878 + MPMX20_04326 0.57 +0.9 4,520,924 - MPMX20_04326 0.61 +1.2 4,520,924 - MPMX20_04326 0.61 -2.2 4,520,924 - MPMX20_04326 0.61 -1.7 4,520,924 - MPMX20_04326 0.61 +0.8 4,520,938 + MPMX20_04326 0.62 +0.6 4,520,971 + MPMX20_04326 0.65 +1.7 4,521,119 - MPMX20_04326 0.79 +1.9 4,521,132 - MPMX20_04326 0.80 +0.4 4,521,170 + MPMX20_04326 0.84 -4.0 4,521,223 - MPMX20_04326 0.89 +1.5
Or see this region's nucleotide sequence