Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04191

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04189 and MPMX20_04190 are separated by 4 nucleotidesMPMX20_04190 and MPMX20_04191 overlap by 11 nucleotidesMPMX20_04191 and MPMX20_04192 are separated by 26 nucleotidesMPMX20_04192 and MPMX20_04193 overlap by 29 nucleotides MPMX20_04189: MPMX20_04189 - Shikimate dehydrogenase (NADP(+)), at 4,392,727 to 4,393,545 _04189 MPMX20_04190: MPMX20_04190 - Threonylcarbamoyl-AMP synthase, at 4,393,550 to 4,394,122 _04190 MPMX20_04191: MPMX20_04191 - DNA topoisomerase 1, at 4,394,112 to 4,394,669 _04191 MPMX20_04192: MPMX20_04192 - Protein Smg, at 4,394,696 to 4,395,169 _04192 MPMX20_04193: MPMX20_04193 - hypothetical protein, at 4,395,141 to 4,396,280 _04193 Position (kb) 4394 4395Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 4393.115 kb on + strand, within MPMX20_04189at 4393.115 kb on + strand, within MPMX20_04189at 4393.148 kb on - strand, within MPMX20_04189at 4393.171 kb on + strand, within MPMX20_04189at 4393.278 kb on + strand, within MPMX20_04189at 4393.286 kb on - strand, within MPMX20_04189at 4393.286 kb on - strand, within MPMX20_04189at 4393.305 kb on - strand, within MPMX20_04189at 4393.343 kb on - strand, within MPMX20_04189at 4393.344 kb on - strand, within MPMX20_04189at 4393.394 kb on + strand, within MPMX20_04189at 4393.483 kb on - strandat 4393.497 kb on - strandat 4393.497 kb on - strandat 4393.497 kb on - strandat 4393.504 kb on + strandat 4393.507 kb on - strandat 4393.555 kb on - strandat 4394.124 kb on + strandat 4394.124 kb on + strandat 4394.154 kb on + strandat 4394.199 kb on - strand, within MPMX20_04191at 4394.225 kb on - strand, within MPMX20_04191at 4394.227 kb on + strand, within MPMX20_04191at 4394.235 kb on - strand, within MPMX20_04191at 4394.311 kb on - strand, within MPMX20_04191at 4394.314 kb on + strand, within MPMX20_04191at 4394.319 kb on + strand, within MPMX20_04191at 4394.355 kb on + strand, within MPMX20_04191at 4394.363 kb on - strand, within MPMX20_04191at 4394.415 kb on - strand, within MPMX20_04191at 4394.476 kb on + strand, within MPMX20_04191at 4394.538 kb on + strand, within MPMX20_04191at 4394.576 kb on - strand, within MPMX20_04191at 4394.583 kb on + strand, within MPMX20_04191at 4394.587 kb on + strand, within MPMX20_04191at 4394.597 kb on + strand, within MPMX20_04191at 4394.649 kb on + strandat 4394.649 kb on + strandat 4394.667 kb on - strandat 4394.669 kb on + strandat 4394.676 kb on + strandat 4394.677 kb on - strandat 4394.717 kb on - strandat 4394.762 kb on + strand, within MPMX20_04192at 4394.796 kb on + strand, within MPMX20_04192at 4394.798 kb on + strand, within MPMX20_04192at 4394.831 kb on - strand, within MPMX20_04192at 4394.831 kb on - strand, within MPMX20_04192at 4394.850 kb on + strand, within MPMX20_04192at 4394.866 kb on + strand, within MPMX20_04192at 4394.888 kb on - strand, within MPMX20_04192at 4394.923 kb on + strand, within MPMX20_04192at 4394.937 kb on - strand, within MPMX20_04192at 4394.937 kb on - strand, within MPMX20_04192at 4394.939 kb on + strand, within MPMX20_04192at 4394.939 kb on + strand, within MPMX20_04192at 4394.939 kb on + strand, within MPMX20_04192at 4394.941 kb on + strand, within MPMX20_04192at 4394.941 kb on + strand, within MPMX20_04192at 4394.947 kb on - strand, within MPMX20_04192at 4394.947 kb on - strand, within MPMX20_04192at 4394.947 kb on - strand, within MPMX20_04192at 4394.947 kb on - strand, within MPMX20_04192at 4394.947 kb on - strand, within MPMX20_04192at 4394.947 kb on - strand, within MPMX20_04192at 4394.947 kb on - strand, within MPMX20_04192at 4394.947 kb on - strand, within MPMX20_04192at 4394.947 kb on - strand, within MPMX20_04192at 4394.949 kb on + strand, within MPMX20_04192at 4394.949 kb on - strand, within MPMX20_04192at 4394.949 kb on - strand, within MPMX20_04192at 4394.957 kb on - strand, within MPMX20_04192at 4394.962 kb on - strand, within MPMX20_04192at 4394.964 kb on + strand, within MPMX20_04192at 4394.971 kb on + strand, within MPMX20_04192at 4394.972 kb on - strand, within MPMX20_04192at 4394.972 kb on - strand, within MPMX20_04192at 4394.972 kb on - strand, within MPMX20_04192at 4394.992 kb on - strand, within MPMX20_04192at 4394.996 kb on + strand, within MPMX20_04192at 4395.078 kb on + strand, within MPMX20_04192at 4395.096 kb on - strand, within MPMX20_04192at 4395.106 kb on - strand, within MPMX20_04192at 4395.106 kb on - strand, within MPMX20_04192at 4395.121 kb on - strand, within MPMX20_04192at 4395.138 kb on + strandat 4395.178 kb on - strandat 4395.188 kb on + strandat 4395.201 kb on + strandat 4395.209 kb on - strandat 4395.245 kb on + strandat 4395.306 kb on - strand, within MPMX20_04193at 4395.306 kb on - strand, within MPMX20_04193at 4395.307 kb on - strand, within MPMX20_04193at 4395.316 kb on + strand, within MPMX20_04193at 4395.321 kb on + strand, within MPMX20_04193at 4395.392 kb on + strand, within MPMX20_04193at 4395.521 kb on - strand, within MPMX20_04193at 4395.527 kb on + strand, within MPMX20_04193at 4395.527 kb on + strand, within MPMX20_04193at 4395.539 kb on + strand, within MPMX20_04193at 4395.539 kb on + strand, within MPMX20_04193at 4395.547 kb on - strand, within MPMX20_04193at 4395.552 kb on - strand, within MPMX20_04193at 4395.584 kb on - strand, within MPMX20_04193at 4395.602 kb on + strand, within MPMX20_04193at 4395.610 kb on - strand, within MPMX20_04193at 4395.610 kb on - strand, within MPMX20_04193at 4395.610 kb on - strand, within MPMX20_04193at 4395.662 kb on + strand, within MPMX20_04193

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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4,393,115 + MPMX20_04189 0.47 -2.5
4,393,115 + MPMX20_04189 0.47 -2.9
4,393,148 - MPMX20_04189 0.51 -0.1
4,393,171 + MPMX20_04189 0.54 -0.3
4,393,278 + MPMX20_04189 0.67 +0.8
4,393,286 - MPMX20_04189 0.68 +0.4
4,393,286 - MPMX20_04189 0.68 -2.3
4,393,305 - MPMX20_04189 0.71 -0.4
4,393,343 - MPMX20_04189 0.75 -2.4
4,393,344 - MPMX20_04189 0.75 -1.8
4,393,394 + MPMX20_04189 0.81 -2.0
4,393,483 - -2.1
4,393,497 - -0.4
4,393,497 - -0.8
4,393,497 - +1.9
4,393,504 + -2.0
4,393,507 - -0.3
4,393,555 - +0.7
4,394,124 + +0.5
4,394,124 + +1.4
4,394,154 + -1.5
4,394,199 - MPMX20_04191 0.16 +3.0
4,394,225 - MPMX20_04191 0.20 +2.5
4,394,227 + MPMX20_04191 0.21 +1.0
4,394,235 - MPMX20_04191 0.22 +0.0
4,394,311 - MPMX20_04191 0.36 +1.0
4,394,314 + MPMX20_04191 0.36 -0.8
4,394,319 + MPMX20_04191 0.37 -1.2
4,394,355 + MPMX20_04191 0.44 +0.4
4,394,363 - MPMX20_04191 0.45 +2.1
4,394,415 - MPMX20_04191 0.54 +0.2
4,394,476 + MPMX20_04191 0.65 +2.4
4,394,538 + MPMX20_04191 0.76 -3.9
4,394,576 - MPMX20_04191 0.83 +3.0
4,394,583 + MPMX20_04191 0.84 -1.7
4,394,587 + MPMX20_04191 0.85 +0.6
4,394,597 + MPMX20_04191 0.87 +1.0
4,394,649 + -2.6
4,394,649 + -2.9
4,394,667 - -2.3
4,394,669 + +2.4
4,394,676 + +0.4
4,394,677 - +0.9
4,394,717 - -3.5
4,394,762 + MPMX20_04192 0.14 -2.6
4,394,796 + MPMX20_04192 0.21 +1.3
4,394,798 + MPMX20_04192 0.22 +1.3
4,394,831 - MPMX20_04192 0.28 -1.4
4,394,831 - MPMX20_04192 0.28 -2.0
4,394,850 + MPMX20_04192 0.32 +0.2
4,394,866 + MPMX20_04192 0.36 +2.3
4,394,888 - MPMX20_04192 0.41 -2.4
4,394,923 + MPMX20_04192 0.48 +1.2
4,394,937 - MPMX20_04192 0.51 +0.6
4,394,937 - MPMX20_04192 0.51 -2.0
4,394,939 + MPMX20_04192 0.51 -0.8
4,394,939 + MPMX20_04192 0.51 +2.1
4,394,939 + MPMX20_04192 0.51 -2.1
4,394,941 + MPMX20_04192 0.52 +0.4
4,394,941 + MPMX20_04192 0.52 +1.5
4,394,947 - MPMX20_04192 0.53 -3.0
4,394,947 - MPMX20_04192 0.53 +0.5
4,394,947 - MPMX20_04192 0.53 +0.2
4,394,947 - MPMX20_04192 0.53 -3.2
4,394,947 - MPMX20_04192 0.53 +2.2
4,394,947 - MPMX20_04192 0.53 +0.8
4,394,947 - MPMX20_04192 0.53 +3.9
4,394,947 - MPMX20_04192 0.53 -2.0
4,394,947 - MPMX20_04192 0.53 -1.5
4,394,949 + MPMX20_04192 0.53 +0.7
4,394,949 - MPMX20_04192 0.53 -2.9
4,394,949 - MPMX20_04192 0.53 +0.7
4,394,957 - MPMX20_04192 0.55 +1.5
4,394,962 - MPMX20_04192 0.56 -3.2
4,394,964 + MPMX20_04192 0.57 +1.0
4,394,971 + MPMX20_04192 0.58 +0.2
4,394,972 - MPMX20_04192 0.58 +2.4
4,394,972 - MPMX20_04192 0.58 -2.2
4,394,972 - MPMX20_04192 0.58 -2.4
4,394,992 - MPMX20_04192 0.62 -1.6
4,394,996 + MPMX20_04192 0.63 +0.6
4,395,078 + MPMX20_04192 0.81 +1.0
4,395,096 - MPMX20_04192 0.84 -3.3
4,395,106 - MPMX20_04192 0.86 +1.2
4,395,106 - MPMX20_04192 0.86 -4.2
4,395,121 - MPMX20_04192 0.90 +0.0
4,395,138 + +1.5
4,395,178 - +0.6
4,395,188 + +0.4
4,395,201 + -2.0
4,395,209 - -0.8
4,395,245 + +1.6
4,395,306 - MPMX20_04193 0.14 +0.2
4,395,306 - MPMX20_04193 0.14 -1.9
4,395,307 - MPMX20_04193 0.15 -1.4
4,395,316 + MPMX20_04193 0.15 -0.9
4,395,321 + MPMX20_04193 0.16 +0.4
4,395,392 + MPMX20_04193 0.22 +2.9
4,395,521 - MPMX20_04193 0.33 +0.5
4,395,527 + MPMX20_04193 0.34 +0.7
4,395,527 + MPMX20_04193 0.34 -3.3
4,395,539 + MPMX20_04193 0.35 +3.2
4,395,539 + MPMX20_04193 0.35 +0.2
4,395,547 - MPMX20_04193 0.36 +1.8
4,395,552 - MPMX20_04193 0.36 +4.4
4,395,584 - MPMX20_04193 0.39 +1.3
4,395,602 + MPMX20_04193 0.40 +0.0
4,395,610 - MPMX20_04193 0.41 -2.1
4,395,610 - MPMX20_04193 0.41 -2.4
4,395,610 - MPMX20_04193 0.41 -3.6
4,395,662 + MPMX20_04193 0.46 -1.9

Or see this region's nucleotide sequence