Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04169

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04168 and MPMX20_04169 are separated by 330 nucleotidesMPMX20_04169 and MPMX20_04170 are separated by 23 nucleotidesMPMX20_04170 and MPMX20_04171 are separated by 180 nucleotidesMPMX20_04171 and MPMX20_04172 are separated by 139 nucleotides MPMX20_04168: MPMX20_04168 - Carbonic anhydrase, at 4,370,778 to 4,371,518 _04168 MPMX20_04169: MPMX20_04169 - tRNA-dihydrouridine synthase B, at 4,371,849 to 4,372,814 _04169 MPMX20_04170: MPMX20_04170 - DNA-binding protein Fis, at 4,372,838 to 4,373,134 _04170 MPMX20_04171: MPMX20_04171 - hypothetical protein, at 4,373,315 to 4,373,479 _04171 MPMX20_04172: MPMX20_04172 - putative signaling protein, at 4,373,619 to 4,375,712 _04172 Position (kb) 4371 4372 4373Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 4370.849 kb on - strandat 4370.857 kb on + strand, within MPMX20_04168at 4370.862 kb on + strand, within MPMX20_04168at 4370.894 kb on + strand, within MPMX20_04168at 4370.923 kb on + strand, within MPMX20_04168at 4370.969 kb on + strand, within MPMX20_04168at 4370.969 kb on + strand, within MPMX20_04168at 4370.977 kb on - strand, within MPMX20_04168at 4370.977 kb on - strand, within MPMX20_04168at 4371.012 kb on - strand, within MPMX20_04168at 4371.031 kb on + strand, within MPMX20_04168at 4371.039 kb on - strand, within MPMX20_04168at 4371.067 kb on + strand, within MPMX20_04168at 4371.068 kb on + strand, within MPMX20_04168at 4371.094 kb on - strand, within MPMX20_04168at 4371.094 kb on - strand, within MPMX20_04168at 4371.094 kb on - strand, within MPMX20_04168at 4371.104 kb on - strand, within MPMX20_04168at 4371.259 kb on - strand, within MPMX20_04168at 4371.260 kb on + strand, within MPMX20_04168at 4371.265 kb on + strand, within MPMX20_04168at 4371.265 kb on + strand, within MPMX20_04168at 4371.265 kb on + strand, within MPMX20_04168at 4371.265 kb on + strand, within MPMX20_04168at 4371.273 kb on - strand, within MPMX20_04168at 4371.273 kb on - strand, within MPMX20_04168at 4371.273 kb on - strand, within MPMX20_04168at 4371.273 kb on - strand, within MPMX20_04168at 4371.273 kb on - strand, within MPMX20_04168at 4371.273 kb on - strand, within MPMX20_04168at 4371.273 kb on - strand, within MPMX20_04168at 4371.365 kb on + strand, within MPMX20_04168at 4371.367 kb on + strand, within MPMX20_04168at 4371.388 kb on + strand, within MPMX20_04168at 4371.392 kb on + strand, within MPMX20_04168at 4371.432 kb on - strand, within MPMX20_04168at 4371.435 kb on - strand, within MPMX20_04168at 4371.472 kb on - strandat 4371.491 kb on - strandat 4371.492 kb on + strandat 4371.728 kb on + strandat 4371.731 kb on - strandat 4371.814 kb on - strandat 4371.823 kb on + strandat 4371.827 kb on + strandat 4371.835 kb on - strandat 4371.881 kb on + strandat 4371.941 kb on + strandat 4371.951 kb on + strand, within MPMX20_04169at 4371.960 kb on - strand, within MPMX20_04169at 4371.971 kb on + strand, within MPMX20_04169at 4372.179 kb on + strand, within MPMX20_04169at 4372.199 kb on - strand, within MPMX20_04169at 4372.208 kb on + strand, within MPMX20_04169at 4372.213 kb on + strand, within MPMX20_04169at 4372.213 kb on + strand, within MPMX20_04169at 4372.221 kb on - strand, within MPMX20_04169at 4372.221 kb on - strand, within MPMX20_04169at 4372.221 kb on - strand, within MPMX20_04169at 4372.230 kb on + strand, within MPMX20_04169at 4372.231 kb on - strand, within MPMX20_04169at 4372.232 kb on + strand, within MPMX20_04169at 4372.240 kb on - strand, within MPMX20_04169at 4372.248 kb on - strand, within MPMX20_04169at 4372.292 kb on + strand, within MPMX20_04169at 4372.298 kb on - strand, within MPMX20_04169at 4372.308 kb on - strand, within MPMX20_04169at 4372.308 kb on - strand, within MPMX20_04169at 4372.308 kb on - strand, within MPMX20_04169at 4372.349 kb on - strand, within MPMX20_04169at 4372.456 kb on + strand, within MPMX20_04169at 4372.456 kb on + strand, within MPMX20_04169at 4372.467 kb on + strand, within MPMX20_04169at 4372.472 kb on + strand, within MPMX20_04169at 4372.472 kb on + strand, within MPMX20_04169at 4372.539 kb on + strand, within MPMX20_04169at 4372.547 kb on - strand, within MPMX20_04169at 4372.664 kb on + strand, within MPMX20_04169at 4372.673 kb on + strand, within MPMX20_04169at 4372.768 kb on + strandat 4372.783 kb on - strandat 4372.926 kb on + strand, within MPMX20_04170at 4372.968 kb on + strand, within MPMX20_04170at 4372.992 kb on + strand, within MPMX20_04170at 4373.054 kb on + strand, within MPMX20_04170at 4373.069 kb on + strand, within MPMX20_04170at 4373.069 kb on + strand, within MPMX20_04170at 4373.069 kb on + strand, within MPMX20_04170at 4373.091 kb on + strand, within MPMX20_04170at 4373.091 kb on + strand, within MPMX20_04170at 4373.214 kb on + strandat 4373.214 kb on + strandat 4373.214 kb on + strandat 4373.214 kb on + strandat 4373.214 kb on + strandat 4373.214 kb on + strandat 4373.214 kb on + strandat 4373.214 kb on + strandat 4373.214 kb on + strandat 4373.222 kb on - strandat 4373.222 kb on - strandat 4373.222 kb on - strandat 4373.222 kb on - strandat 4373.222 kb on - strandat 4373.224 kb on + strandat 4373.224 kb on + strandat 4373.224 kb on + strandat 4373.224 kb on + strandat 4373.224 kb on + strandat 4373.224 kb on + strandat 4373.232 kb on - strandat 4373.232 kb on - strandat 4373.232 kb on - strandat 4373.232 kb on - strandat 4373.254 kb on - strandat 4373.351 kb on + strand, within MPMX20_04171at 4373.388 kb on + strand, within MPMX20_04171at 4373.396 kb on - strand, within MPMX20_04171at 4373.396 kb on - strand, within MPMX20_04171at 4373.401 kb on - strand, within MPMX20_04171at 4373.463 kb on + strandat 4373.463 kb on + strandat 4373.468 kb on + strandat 4373.468 kb on + strandat 4373.471 kb on - strandat 4373.471 kb on - strandat 4373.471 kb on - strandat 4373.481 kb on + strandat 4373.504 kb on + strandat 4373.504 kb on + strandat 4373.544 kb on - strandat 4373.551 kb on - strandat 4373.565 kb on + strandat 4373.572 kb on - strandat 4373.573 kb on + strandat 4373.584 kb on + strandat 4373.595 kb on + strandat 4373.595 kb on + strandat 4373.603 kb on - strandat 4373.603 kb on - strandat 4373.603 kb on - strandat 4373.603 kb on - strandat 4373.603 kb on - strandat 4373.659 kb on + strandat 4373.696 kb on + strandat 4373.696 kb on + strandat 4373.704 kb on - strandat 4373.704 kb on - strandat 4373.726 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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4,370,849 - +1.4
4,370,857 + MPMX20_04168 0.11 +1.4
4,370,862 + MPMX20_04168 0.11 +1.5
4,370,894 + MPMX20_04168 0.16 +1.9
4,370,923 + MPMX20_04168 0.20 -2.8
4,370,969 + MPMX20_04168 0.26 -1.5
4,370,969 + MPMX20_04168 0.26 +2.1
4,370,977 - MPMX20_04168 0.27 -3.2
4,370,977 - MPMX20_04168 0.27 -3.8
4,371,012 - MPMX20_04168 0.32 -3.0
4,371,031 + MPMX20_04168 0.34 -0.2
4,371,039 - MPMX20_04168 0.35 -3.0
4,371,067 + MPMX20_04168 0.39 +2.6
4,371,068 + MPMX20_04168 0.39 -2.0
4,371,094 - MPMX20_04168 0.43 +1.0
4,371,094 - MPMX20_04168 0.43 -1.9
4,371,094 - MPMX20_04168 0.43 -3.0
4,371,104 - MPMX20_04168 0.44 +2.3
4,371,259 - MPMX20_04168 0.65 -1.1
4,371,260 + MPMX20_04168 0.65 +2.8
4,371,265 + MPMX20_04168 0.66 -3.0
4,371,265 + MPMX20_04168 0.66 -0.7
4,371,265 + MPMX20_04168 0.66 -2.2
4,371,265 + MPMX20_04168 0.66 +0.2
4,371,273 - MPMX20_04168 0.67 -2.4
4,371,273 - MPMX20_04168 0.67 +0.4
4,371,273 - MPMX20_04168 0.67 -0.7
4,371,273 - MPMX20_04168 0.67 -2.6
4,371,273 - MPMX20_04168 0.67 +1.1
4,371,273 - MPMX20_04168 0.67 +0.4
4,371,273 - MPMX20_04168 0.67 -2.5
4,371,365 + MPMX20_04168 0.79 +0.0
4,371,367 + MPMX20_04168 0.79 -1.7
4,371,388 + MPMX20_04168 0.82 -1.0
4,371,392 + MPMX20_04168 0.83 +3.4
4,371,432 - MPMX20_04168 0.88 -1.0
4,371,435 - MPMX20_04168 0.89 -0.7
4,371,472 - -3.5
4,371,491 - +0.8
4,371,492 + +2.3
4,371,728 + +2.3
4,371,731 - -0.9
4,371,814 - +0.0
4,371,823 + +1.6
4,371,827 + -1.8
4,371,835 - +2.8
4,371,881 + +2.4
4,371,941 + +2.2
4,371,951 + MPMX20_04169 0.11 -2.9
4,371,960 - MPMX20_04169 0.11 +0.0
4,371,971 + MPMX20_04169 0.13 -1.9
4,372,179 + MPMX20_04169 0.34 -1.8
4,372,199 - MPMX20_04169 0.36 +1.2
4,372,208 + MPMX20_04169 0.37 +2.2
4,372,213 + MPMX20_04169 0.38 +0.4
4,372,213 + MPMX20_04169 0.38 -1.2
4,372,221 - MPMX20_04169 0.39 +1.0
4,372,221 - MPMX20_04169 0.39 +1.0
4,372,221 - MPMX20_04169 0.39 -1.5
4,372,230 + MPMX20_04169 0.39 -1.1
4,372,231 - MPMX20_04169 0.40 +2.3
4,372,232 + MPMX20_04169 0.40 +0.5
4,372,240 - MPMX20_04169 0.40 +1.4
4,372,248 - MPMX20_04169 0.41 +0.0
4,372,292 + MPMX20_04169 0.46 -3.3
4,372,298 - MPMX20_04169 0.46 -1.6
4,372,308 - MPMX20_04169 0.48 +1.4
4,372,308 - MPMX20_04169 0.48 +3.2
4,372,308 - MPMX20_04169 0.48 -1.7
4,372,349 - MPMX20_04169 0.52 -0.5
4,372,456 + MPMX20_04169 0.63 +2.2
4,372,456 + MPMX20_04169 0.63 +1.1
4,372,467 + MPMX20_04169 0.64 +2.4
4,372,472 + MPMX20_04169 0.64 +3.1
4,372,472 + MPMX20_04169 0.64 +0.9
4,372,539 + MPMX20_04169 0.71 +4.0
4,372,547 - MPMX20_04169 0.72 +0.7
4,372,664 + MPMX20_04169 0.84 +2.5
4,372,673 + MPMX20_04169 0.85 +0.4
4,372,768 + -0.3
4,372,783 - +0.2
4,372,926 + MPMX20_04170 0.30 -1.4
4,372,968 + MPMX20_04170 0.44 +2.0
4,372,992 + MPMX20_04170 0.52 +2.0
4,373,054 + MPMX20_04170 0.73 -0.7
4,373,069 + MPMX20_04170 0.78 -0.5
4,373,069 + MPMX20_04170 0.78 +0.7
4,373,069 + MPMX20_04170 0.78 +1.4
4,373,091 + MPMX20_04170 0.85 +1.4
4,373,091 + MPMX20_04170 0.85 +3.0
4,373,214 + +3.2
4,373,214 + +0.3
4,373,214 + -1.6
4,373,214 + +3.1
4,373,214 + -0.6
4,373,214 + +0.8
4,373,214 + -0.5
4,373,214 + -2.4
4,373,214 + -2.8
4,373,222 - +2.0
4,373,222 - -0.3
4,373,222 - +1.6
4,373,222 - +0.5
4,373,222 - +0.0
4,373,224 + -1.5
4,373,224 + +3.0
4,373,224 + -2.1
4,373,224 + -2.8
4,373,224 + -2.6
4,373,224 + +1.9
4,373,232 - +0.5
4,373,232 - +0.9
4,373,232 - +1.6
4,373,232 - -0.2
4,373,254 - -2.2
4,373,351 + MPMX20_04171 0.22 -2.5
4,373,388 + MPMX20_04171 0.44 -2.8
4,373,396 - MPMX20_04171 0.49 -3.4
4,373,396 - MPMX20_04171 0.49 -2.1
4,373,401 - MPMX20_04171 0.52 +1.6
4,373,463 + -0.9
4,373,463 + -2.8
4,373,468 + -3.0
4,373,468 + +1.4
4,373,471 - -0.4
4,373,471 - -3.1
4,373,471 - -0.0
4,373,481 + -2.8
4,373,504 + -3.2
4,373,504 + -0.5
4,373,544 - +3.9
4,373,551 - +2.6
4,373,565 + +0.3
4,373,572 - -1.8
4,373,573 + +0.5
4,373,584 + -1.2
4,373,595 + +0.0
4,373,595 + +0.3
4,373,603 - -0.7
4,373,603 - -1.2
4,373,603 - -2.8
4,373,603 - -3.1
4,373,603 - -1.6
4,373,659 + +0.2
4,373,696 + +0.4
4,373,696 + -0.5
4,373,704 - +0.0
4,373,704 - -0.7
4,373,726 + +1.0

Or see this region's nucleotide sequence