Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04153 and MPMX20_04154 overlap by 11 nucleotides MPMX20_04154 and MPMX20_04155 are separated by 9 nucleotides MPMX20_04155 and MPMX20_04156 overlap by 1 nucleotides
MPMX20_04153: MPMX20_04153 - Ribonuclease G, at 4,355,694 to 4,357,163
_04153
MPMX20_04154: MPMX20_04154 - dTTP/UTP pyrophosphatase, at 4,357,153 to 4,357,746
_04154
MPMX20_04155: MPMX20_04155 - Rod shape-determining protein MreD, at 4,357,756 to 4,358,244
_04155
MPMX20_04156: MPMX20_04156 - Cell shape-determining protein MreC, at 4,358,244 to 4,359,260
_04156
Position (kb)
4357
4358 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4356.169 kb on - strand, within MPMX20_04153 at 4356.169 kb on - strand, within MPMX20_04153 at 4356.193 kb on - strand, within MPMX20_04153 at 4356.212 kb on + strand, within MPMX20_04153 at 4356.364 kb on + strand, within MPMX20_04153 at 4356.390 kb on - strand, within MPMX20_04153 at 4356.425 kb on - strand, within MPMX20_04153 at 4356.448 kb on - strand, within MPMX20_04153 at 4356.523 kb on - strand, within MPMX20_04153 at 4356.540 kb on - strand, within MPMX20_04153 at 4356.572 kb on + strand, within MPMX20_04153 at 4356.592 kb on + strand, within MPMX20_04153 at 4356.592 kb on + strand, within MPMX20_04153 at 4356.600 kb on - strand, within MPMX20_04153 at 4356.600 kb on - strand, within MPMX20_04153 at 4356.732 kb on - strand, within MPMX20_04153 at 4356.970 kb on + strand, within MPMX20_04153 at 4356.978 kb on - strand, within MPMX20_04153 at 4356.978 kb on - strand, within MPMX20_04153 at 4356.978 kb on - strand, within MPMX20_04153 at 4356.980 kb on + strand, within MPMX20_04153 at 4357.011 kb on + strand, within MPMX20_04153 at 4357.103 kb on + strand at 4357.133 kb on + strand at 4357.146 kb on - strand at 4357.222 kb on - strand, within MPMX20_04154 at 4357.260 kb on - strand, within MPMX20_04154 at 4357.315 kb on - strand, within MPMX20_04154 at 4357.386 kb on + strand, within MPMX20_04154 at 4357.404 kb on - strand, within MPMX20_04154 at 4357.493 kb on - strand, within MPMX20_04154 at 4357.623 kb on - strand, within MPMX20_04154 at 4357.665 kb on - strand, within MPMX20_04154 at 4357.671 kb on + strand, within MPMX20_04154 at 4357.671 kb on + strand, within MPMX20_04154
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 4,356,169 - MPMX20_04153 0.32 -0.7 4,356,169 - MPMX20_04153 0.32 -1.1 4,356,193 - MPMX20_04153 0.34 -1.4 4,356,212 + MPMX20_04153 0.35 -1.8 4,356,364 + MPMX20_04153 0.46 -2.8 4,356,390 - MPMX20_04153 0.47 +2.0 4,356,425 - MPMX20_04153 0.50 +0.2 4,356,448 - MPMX20_04153 0.51 -2.6 4,356,523 - MPMX20_04153 0.56 +0.7 4,356,540 - MPMX20_04153 0.58 +3.0 4,356,572 + MPMX20_04153 0.60 -1.2 4,356,592 + MPMX20_04153 0.61 +1.4 4,356,592 + MPMX20_04153 0.61 -0.5 4,356,600 - MPMX20_04153 0.62 -2.5 4,356,600 - MPMX20_04153 0.62 -1.3 4,356,732 - MPMX20_04153 0.71 +2.7 4,356,970 + MPMX20_04153 0.87 +1.6 4,356,978 - MPMX20_04153 0.87 -1.9 4,356,978 - MPMX20_04153 0.87 +1.8 4,356,978 - MPMX20_04153 0.87 -0.1 4,356,980 + MPMX20_04153 0.87 -1.3 4,357,011 + MPMX20_04153 0.90 +2.9 4,357,103 + -0.3 4,357,133 + +2.1 4,357,146 - +2.8 4,357,222 - MPMX20_04154 0.12 -2.3 4,357,260 - MPMX20_04154 0.18 -3.1 4,357,315 - MPMX20_04154 0.27 -1.6 4,357,386 + MPMX20_04154 0.39 -2.6 4,357,404 - MPMX20_04154 0.42 -2.7 4,357,493 - MPMX20_04154 0.57 -1.3 4,357,623 - MPMX20_04154 0.79 +0.7 4,357,665 - MPMX20_04154 0.86 -3.1 4,357,671 + MPMX20_04154 0.87 +1.6 4,357,671 + MPMX20_04154 0.87 -2.9
Or see this region's nucleotide sequence