Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04066

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04065 and MPMX20_04066 are separated by 142 nucleotidesMPMX20_04066 and MPMX20_04067 are separated by 180 nucleotides MPMX20_04065: MPMX20_04065 - Tryptophan-specific transport protein, at 4,261,209 to 4,262,453 _04065 MPMX20_04066: MPMX20_04066 - ATP-dependent RNA helicase DeaD, at 4,262,596 to 4,264,500 _04066 MPMX20_04067: MPMX20_04067 - Lipoprotein NlpI, at 4,264,681 to 4,265,565 _04067 Position (kb) 4262 4263 4264 4265Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4261.604 kb on + strand, within MPMX20_04065at 4261.620 kb on + strand, within MPMX20_04065at 4261.628 kb on - strand, within MPMX20_04065at 4261.632 kb on + strand, within MPMX20_04065at 4261.633 kb on + strand, within MPMX20_04065at 4261.668 kb on + strand, within MPMX20_04065at 4261.676 kb on - strand, within MPMX20_04065at 4261.722 kb on - strand, within MPMX20_04065at 4261.773 kb on + strand, within MPMX20_04065at 4261.781 kb on - strand, within MPMX20_04065at 4261.781 kb on - strand, within MPMX20_04065at 4261.781 kb on - strand, within MPMX20_04065at 4261.843 kb on - strand, within MPMX20_04065at 4261.857 kb on - strand, within MPMX20_04065at 4261.906 kb on + strand, within MPMX20_04065at 4261.906 kb on + strand, within MPMX20_04065at 4261.914 kb on - strand, within MPMX20_04065at 4262.004 kb on + strand, within MPMX20_04065at 4262.017 kb on - strand, within MPMX20_04065at 4262.063 kb on - strand, within MPMX20_04065at 4262.122 kb on - strand, within MPMX20_04065at 4262.198 kb on - strand, within MPMX20_04065at 4262.210 kb on + strand, within MPMX20_04065at 4262.218 kb on - strand, within MPMX20_04065at 4262.271 kb on + strand, within MPMX20_04065at 4262.358 kb on - strandat 4262.427 kb on + strandat 4262.430 kb on - strandat 4262.628 kb on - strandat 4262.798 kb on - strand, within MPMX20_04066at 4263.011 kb on - strand, within MPMX20_04066at 4263.305 kb on - strand, within MPMX20_04066at 4264.629 kb on - strandat 4264.706 kb on - strandat 4264.713 kb on - strandat 4264.912 kb on - strand, within MPMX20_04067at 4265.146 kb on - strand, within MPMX20_04067at 4265.146 kb on - strand, within MPMX20_04067at 4265.146 kb on - strand, within MPMX20_04067at 4265.146 kb on - strand, within MPMX20_04067at 4265.146 kb on - strand, within MPMX20_04067at 4265.146 kb on - strand, within MPMX20_04067at 4265.369 kb on + strand, within MPMX20_04067at 4265.377 kb on - strand, within MPMX20_04067at 4265.377 kb on - strand, within MPMX20_04067at 4265.377 kb on - strand, within MPMX20_04067at 4265.396 kb on + strand, within MPMX20_04067at 4265.404 kb on - strand, within MPMX20_04067at 4265.404 kb on - strand, within MPMX20_04067

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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4,261,604 + MPMX20_04065 0.32 -3.2
4,261,620 + MPMX20_04065 0.33 +0.5
4,261,628 - MPMX20_04065 0.34 -1.9
4,261,632 + MPMX20_04065 0.34 -2.7
4,261,633 + MPMX20_04065 0.34 +1.2
4,261,668 + MPMX20_04065 0.37 +0.5
4,261,676 - MPMX20_04065 0.38 +1.4
4,261,722 - MPMX20_04065 0.41 +1.9
4,261,773 + MPMX20_04065 0.45 -1.6
4,261,781 - MPMX20_04065 0.46 +0.1
4,261,781 - MPMX20_04065 0.46 +2.1
4,261,781 - MPMX20_04065 0.46 -3.1
4,261,843 - MPMX20_04065 0.51 -0.1
4,261,857 - MPMX20_04065 0.52 -1.1
4,261,906 + MPMX20_04065 0.56 +3.1
4,261,906 + MPMX20_04065 0.56 -4.2
4,261,914 - MPMX20_04065 0.57 -2.5
4,262,004 + MPMX20_04065 0.64 -3.7
4,262,017 - MPMX20_04065 0.65 -0.8
4,262,063 - MPMX20_04065 0.69 +0.5
4,262,122 - MPMX20_04065 0.73 +2.1
4,262,198 - MPMX20_04065 0.79 +1.5
4,262,210 + MPMX20_04065 0.80 +0.3
4,262,218 - MPMX20_04065 0.81 +2.6
4,262,271 + MPMX20_04065 0.85 -2.0
4,262,358 - -4.1
4,262,427 + +1.9
4,262,430 - -0.9
4,262,628 - -2.0
4,262,798 - MPMX20_04066 0.11 +1.6
4,263,011 - MPMX20_04066 0.22 +0.1
4,263,305 - MPMX20_04066 0.37 +1.2
4,264,629 - +3.3
4,264,706 - +1.0
4,264,713 - +2.6
4,264,912 - MPMX20_04067 0.26 +2.7
4,265,146 - MPMX20_04067 0.53 -2.0
4,265,146 - MPMX20_04067 0.53 +1.3
4,265,146 - MPMX20_04067 0.53 -2.9
4,265,146 - MPMX20_04067 0.53 +0.9
4,265,146 - MPMX20_04067 0.53 -2.0
4,265,146 - MPMX20_04067 0.53 +3.4
4,265,369 + MPMX20_04067 0.78 +0.5
4,265,377 - MPMX20_04067 0.79 -2.6
4,265,377 - MPMX20_04067 0.79 -2.3
4,265,377 - MPMX20_04067 0.79 -1.1
4,265,396 + MPMX20_04067 0.81 -3.0
4,265,404 - MPMX20_04067 0.82 -1.7
4,265,404 - MPMX20_04067 0.82 -2.1

Or see this region's nucleotide sequence