Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04016 and MPMX20_04017 are separated by 262 nucleotides MPMX20_04017 and MPMX20_04018 are separated by 151 nucleotides
MPMX20_04016: MPMX20_04016 - putative serine transporter, at 4,211,344 to 4,212,675
_04016
MPMX20_04017: MPMX20_04017 - hypothetical protein, at 4,212,938 to 4,213,348
_04017
MPMX20_04018: MPMX20_04018 - PFL-like enzyme TdcE, at 4,213,500 to 4,215,794
_04018
Position (kb)
4212
4213
4214 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6 at 4211.945 kb on - strand, within MPMX20_04016 at 4211.966 kb on - strand, within MPMX20_04016 at 4211.966 kb on - strand, within MPMX20_04016 at 4211.979 kb on + strand, within MPMX20_04016 at 4211.985 kb on + strand, within MPMX20_04016 at 4212.088 kb on + strand, within MPMX20_04016 at 4212.130 kb on + strand, within MPMX20_04016 at 4212.182 kb on + strand, within MPMX20_04016 at 4212.187 kb on + strand, within MPMX20_04016 at 4212.237 kb on + strand, within MPMX20_04016 at 4212.245 kb on - strand, within MPMX20_04016 at 4212.265 kb on + strand, within MPMX20_04016 at 4212.329 kb on + strand, within MPMX20_04016 at 4212.349 kb on - strand, within MPMX20_04016 at 4212.451 kb on + strand, within MPMX20_04016 at 4212.504 kb on - strand, within MPMX20_04016 at 4212.567 kb on - strand at 4212.620 kb on - strand at 4212.620 kb on - strand at 4212.632 kb on + strand at 4212.653 kb on - strand at 4212.783 kb on - strand at 4212.939 kb on + strand at 4212.939 kb on + strand at 4212.975 kb on + strand at 4212.993 kb on - strand, within MPMX20_04017 at 4213.075 kb on + strand, within MPMX20_04017 at 4213.096 kb on - strand, within MPMX20_04017 at 4213.115 kb on - strand, within MPMX20_04017 at 4213.187 kb on - strand, within MPMX20_04017 at 4213.222 kb on + strand, within MPMX20_04017 at 4213.230 kb on - strand, within MPMX20_04017 at 4213.230 kb on - strand, within MPMX20_04017 at 4213.266 kb on + strand, within MPMX20_04017 at 4213.274 kb on - strand, within MPMX20_04017 at 4213.296 kb on + strand, within MPMX20_04017 at 4213.303 kb on + strand, within MPMX20_04017 at 4213.306 kb on - strand, within MPMX20_04017 at 4213.505 kb on - strand at 4213.505 kb on - strand at 4213.606 kb on - strand at 4213.608 kb on + strand at 4213.662 kb on - strand at 4213.662 kb on - strand at 4213.673 kb on + strand at 4213.685 kb on - strand at 4213.744 kb on + strand, within MPMX20_04018 at 4213.750 kb on + strand, within MPMX20_04018 at 4213.751 kb on - strand, within MPMX20_04018 at 4213.752 kb on - strand, within MPMX20_04018 at 4213.752 kb on - strand, within MPMX20_04018 at 4213.758 kb on - strand, within MPMX20_04018 at 4213.776 kb on + strand, within MPMX20_04018 at 4213.782 kb on + strand, within MPMX20_04018 at 4213.789 kb on - strand, within MPMX20_04018 at 4213.791 kb on - strand, within MPMX20_04018 at 4213.817 kb on - strand, within MPMX20_04018 at 4213.840 kb on - strand, within MPMX20_04018 at 4213.841 kb on - strand, within MPMX20_04018 at 4213.841 kb on - strand, within MPMX20_04018 at 4213.898 kb on + strand, within MPMX20_04018 at 4213.973 kb on - strand, within MPMX20_04018 at 4213.980 kb on + strand, within MPMX20_04018 at 4213.980 kb on + strand, within MPMX20_04018 at 4213.988 kb on - strand, within MPMX20_04018 at 4213.991 kb on + strand, within MPMX20_04018 at 4214.001 kb on + strand, within MPMX20_04018 at 4214.073 kb on + strand, within MPMX20_04018 at 4214.164 kb on + strand, within MPMX20_04018 at 4214.236 kb on - strand, within MPMX20_04018 at 4214.250 kb on + strand, within MPMX20_04018 at 4214.263 kb on + strand, within MPMX20_04018 at 4214.273 kb on - strand, within MPMX20_04018 at 4214.305 kb on + strand, within MPMX20_04018 at 4214.305 kb on + strand, within MPMX20_04018 at 4214.318 kb on + strand, within MPMX20_04018 at 4214.318 kb on - strand, within MPMX20_04018 at 4214.326 kb on - strand, within MPMX20_04018
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 4,211,945 - MPMX20_04016 0.45 +6.0 4,211,966 - MPMX20_04016 0.47 +0.0 4,211,966 - MPMX20_04016 0.47 -2.3 4,211,979 + MPMX20_04016 0.48 -2.9 4,211,985 + MPMX20_04016 0.48 +1.6 4,212,088 + MPMX20_04016 0.56 +1.7 4,212,130 + MPMX20_04016 0.59 -0.8 4,212,182 + MPMX20_04016 0.63 -2.6 4,212,187 + MPMX20_04016 0.63 -3.1 4,212,237 + MPMX20_04016 0.67 -0.8 4,212,245 - MPMX20_04016 0.68 +1.9 4,212,265 + MPMX20_04016 0.69 +1.9 4,212,329 + MPMX20_04016 0.74 -1.4 4,212,349 - MPMX20_04016 0.75 +2.7 4,212,451 + MPMX20_04016 0.83 +2.1 4,212,504 - MPMX20_04016 0.87 +1.2 4,212,567 - -2.4 4,212,620 - -1.9 4,212,620 - -1.9 4,212,632 + -1.9 4,212,653 - +0.5 4,212,783 - -2.7 4,212,939 + -0.0 4,212,939 + +3.4 4,212,975 + -2.1 4,212,993 - MPMX20_04017 0.13 -2.6 4,213,075 + MPMX20_04017 0.33 +4.7 4,213,096 - MPMX20_04017 0.38 +2.6 4,213,115 - MPMX20_04017 0.43 +2.7 4,213,187 - MPMX20_04017 0.61 +1.7 4,213,222 + MPMX20_04017 0.69 -3.1 4,213,230 - MPMX20_04017 0.71 +2.1 4,213,230 - MPMX20_04017 0.71 -0.9 4,213,266 + MPMX20_04017 0.80 +0.3 4,213,274 - MPMX20_04017 0.82 +2.8 4,213,296 + MPMX20_04017 0.87 +1.7 4,213,303 + MPMX20_04017 0.89 +3.2 4,213,306 - MPMX20_04017 0.90 +0.1 4,213,505 - +0.8 4,213,505 - +1.2 4,213,606 - -2.1 4,213,608 + -0.6 4,213,662 - -3.4 4,213,662 - +0.8 4,213,673 + -2.0 4,213,685 - +1.0 4,213,744 + MPMX20_04018 0.11 +0.3 4,213,750 + MPMX20_04018 0.11 +2.3 4,213,751 - MPMX20_04018 0.11 +2.0 4,213,752 - MPMX20_04018 0.11 +2.2 4,213,752 - MPMX20_04018 0.11 +0.6 4,213,758 - MPMX20_04018 0.11 +0.6 4,213,776 + MPMX20_04018 0.12 -0.9 4,213,782 + MPMX20_04018 0.12 -1.0 4,213,789 - MPMX20_04018 0.13 -2.7 4,213,791 - MPMX20_04018 0.13 -1.1 4,213,817 - MPMX20_04018 0.14 +1.4 4,213,840 - MPMX20_04018 0.15 -1.2 4,213,841 - MPMX20_04018 0.15 +0.9 4,213,841 - MPMX20_04018 0.15 +1.7 4,213,898 + MPMX20_04018 0.17 -2.5 4,213,973 - MPMX20_04018 0.21 -0.4 4,213,980 + MPMX20_04018 0.21 -0.4 4,213,980 + MPMX20_04018 0.21 +0.1 4,213,988 - MPMX20_04018 0.21 -2.6 4,213,991 + MPMX20_04018 0.21 -2.6 4,214,001 + MPMX20_04018 0.22 +1.8 4,214,073 + MPMX20_04018 0.25 -2.8 4,214,164 + MPMX20_04018 0.29 -2.6 4,214,236 - MPMX20_04018 0.32 +0.4 4,214,250 + MPMX20_04018 0.33 -1.5 4,214,263 + MPMX20_04018 0.33 +0.3 4,214,273 - MPMX20_04018 0.34 -0.1 4,214,305 + MPMX20_04018 0.35 +0.8 4,214,305 + MPMX20_04018 0.35 -0.6 4,214,318 + MPMX20_04018 0.36 -0.5 4,214,318 - MPMX20_04018 0.36 -0.4 4,214,326 - MPMX20_04018 0.36 +1.3
Or see this region's nucleotide sequence