Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04017

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04016 and MPMX20_04017 are separated by 262 nucleotidesMPMX20_04017 and MPMX20_04018 are separated by 151 nucleotides MPMX20_04016: MPMX20_04016 - putative serine transporter, at 4,211,344 to 4,212,675 _04016 MPMX20_04017: MPMX20_04017 - hypothetical protein, at 4,212,938 to 4,213,348 _04017 MPMX20_04018: MPMX20_04018 - PFL-like enzyme TdcE, at 4,213,500 to 4,215,794 _04018 Position (kb) 4212 4213 4214Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 4211.945 kb on - strand, within MPMX20_04016at 4211.966 kb on - strand, within MPMX20_04016at 4211.966 kb on - strand, within MPMX20_04016at 4211.979 kb on + strand, within MPMX20_04016at 4211.985 kb on + strand, within MPMX20_04016at 4212.088 kb on + strand, within MPMX20_04016at 4212.130 kb on + strand, within MPMX20_04016at 4212.182 kb on + strand, within MPMX20_04016at 4212.187 kb on + strand, within MPMX20_04016at 4212.237 kb on + strand, within MPMX20_04016at 4212.245 kb on - strand, within MPMX20_04016at 4212.265 kb on + strand, within MPMX20_04016at 4212.329 kb on + strand, within MPMX20_04016at 4212.349 kb on - strand, within MPMX20_04016at 4212.451 kb on + strand, within MPMX20_04016at 4212.504 kb on - strand, within MPMX20_04016at 4212.567 kb on - strandat 4212.620 kb on - strandat 4212.620 kb on - strandat 4212.632 kb on + strandat 4212.653 kb on - strandat 4212.783 kb on - strandat 4212.939 kb on + strandat 4212.939 kb on + strandat 4212.975 kb on + strandat 4212.993 kb on - strand, within MPMX20_04017at 4213.075 kb on + strand, within MPMX20_04017at 4213.096 kb on - strand, within MPMX20_04017at 4213.115 kb on - strand, within MPMX20_04017at 4213.187 kb on - strand, within MPMX20_04017at 4213.222 kb on + strand, within MPMX20_04017at 4213.230 kb on - strand, within MPMX20_04017at 4213.230 kb on - strand, within MPMX20_04017at 4213.266 kb on + strand, within MPMX20_04017at 4213.274 kb on - strand, within MPMX20_04017at 4213.296 kb on + strand, within MPMX20_04017at 4213.303 kb on + strand, within MPMX20_04017at 4213.306 kb on - strand, within MPMX20_04017at 4213.505 kb on - strandat 4213.505 kb on - strandat 4213.606 kb on - strandat 4213.608 kb on + strandat 4213.662 kb on - strandat 4213.662 kb on - strandat 4213.673 kb on + strandat 4213.685 kb on - strandat 4213.744 kb on + strand, within MPMX20_04018at 4213.750 kb on + strand, within MPMX20_04018at 4213.751 kb on - strand, within MPMX20_04018at 4213.752 kb on - strand, within MPMX20_04018at 4213.752 kb on - strand, within MPMX20_04018at 4213.758 kb on - strand, within MPMX20_04018at 4213.776 kb on + strand, within MPMX20_04018at 4213.782 kb on + strand, within MPMX20_04018at 4213.789 kb on - strand, within MPMX20_04018at 4213.791 kb on - strand, within MPMX20_04018at 4213.817 kb on - strand, within MPMX20_04018at 4213.840 kb on - strand, within MPMX20_04018at 4213.841 kb on - strand, within MPMX20_04018at 4213.841 kb on - strand, within MPMX20_04018at 4213.898 kb on + strand, within MPMX20_04018at 4213.973 kb on - strand, within MPMX20_04018at 4213.980 kb on + strand, within MPMX20_04018at 4213.980 kb on + strand, within MPMX20_04018at 4213.988 kb on - strand, within MPMX20_04018at 4213.991 kb on + strand, within MPMX20_04018at 4214.001 kb on + strand, within MPMX20_04018at 4214.073 kb on + strand, within MPMX20_04018at 4214.164 kb on + strand, within MPMX20_04018at 4214.236 kb on - strand, within MPMX20_04018at 4214.250 kb on + strand, within MPMX20_04018at 4214.263 kb on + strand, within MPMX20_04018at 4214.273 kb on - strand, within MPMX20_04018at 4214.305 kb on + strand, within MPMX20_04018at 4214.305 kb on + strand, within MPMX20_04018at 4214.318 kb on + strand, within MPMX20_04018at 4214.318 kb on - strand, within MPMX20_04018at 4214.326 kb on - strand, within MPMX20_04018

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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4,211,945 - MPMX20_04016 0.45 +6.0
4,211,966 - MPMX20_04016 0.47 +0.0
4,211,966 - MPMX20_04016 0.47 -2.3
4,211,979 + MPMX20_04016 0.48 -2.9
4,211,985 + MPMX20_04016 0.48 +1.6
4,212,088 + MPMX20_04016 0.56 +1.7
4,212,130 + MPMX20_04016 0.59 -0.8
4,212,182 + MPMX20_04016 0.63 -2.6
4,212,187 + MPMX20_04016 0.63 -3.1
4,212,237 + MPMX20_04016 0.67 -0.8
4,212,245 - MPMX20_04016 0.68 +1.9
4,212,265 + MPMX20_04016 0.69 +1.9
4,212,329 + MPMX20_04016 0.74 -1.4
4,212,349 - MPMX20_04016 0.75 +2.7
4,212,451 + MPMX20_04016 0.83 +2.1
4,212,504 - MPMX20_04016 0.87 +1.2
4,212,567 - -2.4
4,212,620 - -1.9
4,212,620 - -1.9
4,212,632 + -1.9
4,212,653 - +0.5
4,212,783 - -2.7
4,212,939 + -0.0
4,212,939 + +3.4
4,212,975 + -2.1
4,212,993 - MPMX20_04017 0.13 -2.6
4,213,075 + MPMX20_04017 0.33 +4.7
4,213,096 - MPMX20_04017 0.38 +2.6
4,213,115 - MPMX20_04017 0.43 +2.7
4,213,187 - MPMX20_04017 0.61 +1.7
4,213,222 + MPMX20_04017 0.69 -3.1
4,213,230 - MPMX20_04017 0.71 +2.1
4,213,230 - MPMX20_04017 0.71 -0.9
4,213,266 + MPMX20_04017 0.80 +0.3
4,213,274 - MPMX20_04017 0.82 +2.8
4,213,296 + MPMX20_04017 0.87 +1.7
4,213,303 + MPMX20_04017 0.89 +3.2
4,213,306 - MPMX20_04017 0.90 +0.1
4,213,505 - +0.8
4,213,505 - +1.2
4,213,606 - -2.1
4,213,608 + -0.6
4,213,662 - -3.4
4,213,662 - +0.8
4,213,673 + -2.0
4,213,685 - +1.0
4,213,744 + MPMX20_04018 0.11 +0.3
4,213,750 + MPMX20_04018 0.11 +2.3
4,213,751 - MPMX20_04018 0.11 +2.0
4,213,752 - MPMX20_04018 0.11 +2.2
4,213,752 - MPMX20_04018 0.11 +0.6
4,213,758 - MPMX20_04018 0.11 +0.6
4,213,776 + MPMX20_04018 0.12 -0.9
4,213,782 + MPMX20_04018 0.12 -1.0
4,213,789 - MPMX20_04018 0.13 -2.7
4,213,791 - MPMX20_04018 0.13 -1.1
4,213,817 - MPMX20_04018 0.14 +1.4
4,213,840 - MPMX20_04018 0.15 -1.2
4,213,841 - MPMX20_04018 0.15 +0.9
4,213,841 - MPMX20_04018 0.15 +1.7
4,213,898 + MPMX20_04018 0.17 -2.5
4,213,973 - MPMX20_04018 0.21 -0.4
4,213,980 + MPMX20_04018 0.21 -0.4
4,213,980 + MPMX20_04018 0.21 +0.1
4,213,988 - MPMX20_04018 0.21 -2.6
4,213,991 + MPMX20_04018 0.21 -2.6
4,214,001 + MPMX20_04018 0.22 +1.8
4,214,073 + MPMX20_04018 0.25 -2.8
4,214,164 + MPMX20_04018 0.29 -2.6
4,214,236 - MPMX20_04018 0.32 +0.4
4,214,250 + MPMX20_04018 0.33 -1.5
4,214,263 + MPMX20_04018 0.33 +0.3
4,214,273 - MPMX20_04018 0.34 -0.1
4,214,305 + MPMX20_04018 0.35 +0.8
4,214,305 + MPMX20_04018 0.35 -0.6
4,214,318 + MPMX20_04018 0.36 -0.5
4,214,318 - MPMX20_04018 0.36 -0.4
4,214,326 - MPMX20_04018 0.36 +1.3

Or see this region's nucleotide sequence