Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04014

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04013 and MPMX20_04014 are separated by 103 nucleotidesMPMX20_04014 and MPMX20_04015 are separated by 41 nucleotides MPMX20_04013: MPMX20_04013 - HTH-type transcriptional regulator YhaJ, at 4,208,273 to 4,209,175 _04013 MPMX20_04014: MPMX20_04014 - Pirin-like protein YhaK, at 4,209,279 to 4,209,980 _04014 MPMX20_04015: MPMX20_04015 - hypothetical protein, at 4,210,022 to 4,211,323 _04015 Position (kb) 4209 4210Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4208.330 kb on - strandat 4208.332 kb on + strandat 4208.340 kb on - strandat 4208.340 kb on - strandat 4208.356 kb on + strandat 4208.378 kb on + strand, within MPMX20_04013at 4208.378 kb on + strand, within MPMX20_04013at 4208.378 kb on + strand, within MPMX20_04013at 4208.383 kb on + strand, within MPMX20_04013at 4208.383 kb on + strand, within MPMX20_04013at 4208.386 kb on - strand, within MPMX20_04013at 4208.391 kb on - strand, within MPMX20_04013at 4208.391 kb on - strand, within MPMX20_04013at 4208.455 kb on + strand, within MPMX20_04013at 4208.464 kb on - strand, within MPMX20_04013at 4208.464 kb on - strand, within MPMX20_04013at 4208.464 kb on - strand, within MPMX20_04013at 4208.504 kb on + strand, within MPMX20_04013at 4208.652 kb on + strand, within MPMX20_04013at 4208.670 kb on + strand, within MPMX20_04013at 4208.678 kb on - strand, within MPMX20_04013at 4208.876 kb on + strand, within MPMX20_04013at 4208.900 kb on + strand, within MPMX20_04013at 4208.958 kb on + strand, within MPMX20_04013at 4209.054 kb on + strand, within MPMX20_04013at 4209.054 kb on + strand, within MPMX20_04013at 4209.054 kb on + strand, within MPMX20_04013at 4209.062 kb on - strand, within MPMX20_04013at 4209.062 kb on - strand, within MPMX20_04013at 4209.062 kb on - strand, within MPMX20_04013at 4209.062 kb on - strand, within MPMX20_04013at 4209.126 kb on - strandat 4209.160 kb on - strandat 4209.269 kb on + strandat 4209.295 kb on + strandat 4209.295 kb on + strandat 4209.303 kb on - strandat 4209.303 kb on - strandat 4209.303 kb on - strandat 4209.303 kb on - strandat 4209.303 kb on - strandat 4209.303 kb on - strandat 4209.305 kb on - strandat 4209.339 kb on + strandat 4209.347 kb on - strandat 4209.347 kb on - strandat 4209.364 kb on + strand, within MPMX20_04014at 4209.386 kb on - strand, within MPMX20_04014at 4209.425 kb on - strand, within MPMX20_04014at 4209.432 kb on - strand, within MPMX20_04014at 4209.477 kb on - strand, within MPMX20_04014at 4209.523 kb on - strand, within MPMX20_04014at 4209.530 kb on + strand, within MPMX20_04014at 4209.586 kb on + strand, within MPMX20_04014at 4209.586 kb on + strand, within MPMX20_04014at 4209.616 kb on + strand, within MPMX20_04014at 4209.617 kb on - strand, within MPMX20_04014at 4209.619 kb on + strand, within MPMX20_04014at 4209.619 kb on + strand, within MPMX20_04014at 4209.701 kb on + strand, within MPMX20_04014at 4209.709 kb on - strand, within MPMX20_04014at 4209.709 kb on - strand, within MPMX20_04014at 4209.803 kb on + strand, within MPMX20_04014at 4209.886 kb on + strand, within MPMX20_04014at 4209.887 kb on - strand, within MPMX20_04014at 4210.119 kb on - strandat 4210.202 kb on + strand, within MPMX20_04015at 4210.202 kb on + strand, within MPMX20_04015at 4210.202 kb on + strand, within MPMX20_04015at 4210.202 kb on + strand, within MPMX20_04015at 4210.211 kb on - strand, within MPMX20_04015at 4210.218 kb on + strand, within MPMX20_04015at 4210.231 kb on - strand, within MPMX20_04015at 4210.281 kb on + strand, within MPMX20_04015at 4210.301 kb on - strand, within MPMX20_04015at 4210.302 kb on - strand, within MPMX20_04015at 4210.319 kb on + strand, within MPMX20_04015at 4210.384 kb on + strand, within MPMX20_04015at 4210.433 kb on + strand, within MPMX20_04015at 4210.469 kb on - strand, within MPMX20_04015at 4210.564 kb on + strand, within MPMX20_04015at 4210.582 kb on - strand, within MPMX20_04015at 4210.665 kb on - strand, within MPMX20_04015at 4210.764 kb on - strand, within MPMX20_04015at 4210.913 kb on - strand, within MPMX20_04015

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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4,208,330 - +0.8
4,208,332 + -2.2
4,208,340 - +2.2
4,208,340 - -3.6
4,208,356 + +1.6
4,208,378 + MPMX20_04013 0.12 +1.5
4,208,378 + MPMX20_04013 0.12 -0.5
4,208,378 + MPMX20_04013 0.12 -2.0
4,208,383 + MPMX20_04013 0.12 -0.5
4,208,383 + MPMX20_04013 0.12 -0.8
4,208,386 - MPMX20_04013 0.13 +2.4
4,208,391 - MPMX20_04013 0.13 +1.7
4,208,391 - MPMX20_04013 0.13 -2.8
4,208,455 + MPMX20_04013 0.20 +0.0
4,208,464 - MPMX20_04013 0.21 +2.0
4,208,464 - MPMX20_04013 0.21 -1.0
4,208,464 - MPMX20_04013 0.21 +1.1
4,208,504 + MPMX20_04013 0.26 -3.7
4,208,652 + MPMX20_04013 0.42 -1.7
4,208,670 + MPMX20_04013 0.44 -2.2
4,208,678 - MPMX20_04013 0.45 -1.2
4,208,876 + MPMX20_04013 0.67 -2.5
4,208,900 + MPMX20_04013 0.69 +0.3
4,208,958 + MPMX20_04013 0.76 -0.0
4,209,054 + MPMX20_04013 0.86 -2.0
4,209,054 + MPMX20_04013 0.86 +3.1
4,209,054 + MPMX20_04013 0.86 -2.4
4,209,062 - MPMX20_04013 0.87 -0.8
4,209,062 - MPMX20_04013 0.87 +1.4
4,209,062 - MPMX20_04013 0.87 +1.1
4,209,062 - MPMX20_04013 0.87 +0.3
4,209,126 - -0.2
4,209,160 - -2.3
4,209,269 + -2.2
4,209,295 + -1.7
4,209,295 + -1.6
4,209,303 - -1.9
4,209,303 - +1.1
4,209,303 - -3.5
4,209,303 - -2.6
4,209,303 - +1.4
4,209,303 - -1.7
4,209,305 - +1.2
4,209,339 + +1.6
4,209,347 - -2.0
4,209,347 - -1.7
4,209,364 + MPMX20_04014 0.12 +3.1
4,209,386 - MPMX20_04014 0.15 -0.7
4,209,425 - MPMX20_04014 0.21 -2.4
4,209,432 - MPMX20_04014 0.22 +1.6
4,209,477 - MPMX20_04014 0.28 -4.0
4,209,523 - MPMX20_04014 0.35 +1.8
4,209,530 + MPMX20_04014 0.36 +3.1
4,209,586 + MPMX20_04014 0.44 +2.3
4,209,586 + MPMX20_04014 0.44 -0.5
4,209,616 + MPMX20_04014 0.48 +1.6
4,209,617 - MPMX20_04014 0.48 -2.2
4,209,619 + MPMX20_04014 0.48 +0.5
4,209,619 + MPMX20_04014 0.48 +0.3
4,209,701 + MPMX20_04014 0.60 +2.0
4,209,709 - MPMX20_04014 0.61 +3.2
4,209,709 - MPMX20_04014 0.61 -1.4
4,209,803 + MPMX20_04014 0.75 -1.6
4,209,886 + MPMX20_04014 0.86 +1.8
4,209,887 - MPMX20_04014 0.87 -1.1
4,210,119 - +1.2
4,210,202 + MPMX20_04015 0.14 -1.1
4,210,202 + MPMX20_04015 0.14 +0.3
4,210,202 + MPMX20_04015 0.14 +0.1
4,210,202 + MPMX20_04015 0.14 +1.1
4,210,211 - MPMX20_04015 0.15 +2.7
4,210,218 + MPMX20_04015 0.15 +0.3
4,210,231 - MPMX20_04015 0.16 +1.5
4,210,281 + MPMX20_04015 0.20 +0.3
4,210,301 - MPMX20_04015 0.21 +1.3
4,210,302 - MPMX20_04015 0.22 +2.5
4,210,319 + MPMX20_04015 0.23 -0.5
4,210,384 + MPMX20_04015 0.28 +0.6
4,210,433 + MPMX20_04015 0.32 -0.4
4,210,469 - MPMX20_04015 0.34 -0.8
4,210,564 + MPMX20_04015 0.42 +0.5
4,210,582 - MPMX20_04015 0.43 +1.5
4,210,665 - MPMX20_04015 0.49 +0.8
4,210,764 - MPMX20_04015 0.57 +2.7
4,210,913 - MPMX20_04015 0.68 -2.0

Or see this region's nucleotide sequence