Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04013 and MPMX20_04014 are separated by 103 nucleotides MPMX20_04014 and MPMX20_04015 are separated by 41 nucleotides
MPMX20_04013: MPMX20_04013 - HTH-type transcriptional regulator YhaJ, at 4,208,273 to 4,209,175
_04013
MPMX20_04014: MPMX20_04014 - Pirin-like protein YhaK, at 4,209,279 to 4,209,980
_04014
MPMX20_04015: MPMX20_04015 - hypothetical protein, at 4,210,022 to 4,211,323
_04015
Position (kb)
4209
4210 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 4208.330 kb on - strand at 4208.332 kb on + strand at 4208.340 kb on - strand at 4208.340 kb on - strand at 4208.356 kb on + strand at 4208.378 kb on + strand, within MPMX20_04013 at 4208.378 kb on + strand, within MPMX20_04013 at 4208.378 kb on + strand, within MPMX20_04013 at 4208.383 kb on + strand, within MPMX20_04013 at 4208.383 kb on + strand, within MPMX20_04013 at 4208.386 kb on - strand, within MPMX20_04013 at 4208.391 kb on - strand, within MPMX20_04013 at 4208.391 kb on - strand, within MPMX20_04013 at 4208.455 kb on + strand, within MPMX20_04013 at 4208.464 kb on - strand, within MPMX20_04013 at 4208.464 kb on - strand, within MPMX20_04013 at 4208.464 kb on - strand, within MPMX20_04013 at 4208.504 kb on + strand, within MPMX20_04013 at 4208.652 kb on + strand, within MPMX20_04013 at 4208.670 kb on + strand, within MPMX20_04013 at 4208.678 kb on - strand, within MPMX20_04013 at 4208.876 kb on + strand, within MPMX20_04013 at 4208.900 kb on + strand, within MPMX20_04013 at 4208.958 kb on + strand, within MPMX20_04013 at 4209.054 kb on + strand, within MPMX20_04013 at 4209.054 kb on + strand, within MPMX20_04013 at 4209.054 kb on + strand, within MPMX20_04013 at 4209.062 kb on - strand, within MPMX20_04013 at 4209.062 kb on - strand, within MPMX20_04013 at 4209.062 kb on - strand, within MPMX20_04013 at 4209.062 kb on - strand, within MPMX20_04013 at 4209.126 kb on - strand at 4209.160 kb on - strand at 4209.269 kb on + strand at 4209.295 kb on + strand at 4209.295 kb on + strand at 4209.303 kb on - strand at 4209.303 kb on - strand at 4209.303 kb on - strand at 4209.303 kb on - strand at 4209.303 kb on - strand at 4209.303 kb on - strand at 4209.305 kb on - strand at 4209.339 kb on + strand at 4209.347 kb on - strand at 4209.347 kb on - strand at 4209.364 kb on + strand, within MPMX20_04014 at 4209.386 kb on - strand, within MPMX20_04014 at 4209.425 kb on - strand, within MPMX20_04014 at 4209.432 kb on - strand, within MPMX20_04014 at 4209.477 kb on - strand, within MPMX20_04014 at 4209.523 kb on - strand, within MPMX20_04014 at 4209.530 kb on + strand, within MPMX20_04014 at 4209.586 kb on + strand, within MPMX20_04014 at 4209.586 kb on + strand, within MPMX20_04014 at 4209.616 kb on + strand, within MPMX20_04014 at 4209.617 kb on - strand, within MPMX20_04014 at 4209.619 kb on + strand, within MPMX20_04014 at 4209.619 kb on + strand, within MPMX20_04014 at 4209.701 kb on + strand, within MPMX20_04014 at 4209.709 kb on - strand, within MPMX20_04014 at 4209.709 kb on - strand, within MPMX20_04014 at 4209.803 kb on + strand, within MPMX20_04014 at 4209.886 kb on + strand, within MPMX20_04014 at 4209.887 kb on - strand, within MPMX20_04014 at 4210.119 kb on - strand at 4210.202 kb on + strand, within MPMX20_04015 at 4210.202 kb on + strand, within MPMX20_04015 at 4210.202 kb on + strand, within MPMX20_04015 at 4210.202 kb on + strand, within MPMX20_04015 at 4210.211 kb on - strand, within MPMX20_04015 at 4210.218 kb on + strand, within MPMX20_04015 at 4210.231 kb on - strand, within MPMX20_04015 at 4210.281 kb on + strand, within MPMX20_04015 at 4210.301 kb on - strand, within MPMX20_04015 at 4210.302 kb on - strand, within MPMX20_04015 at 4210.319 kb on + strand, within MPMX20_04015 at 4210.384 kb on + strand, within MPMX20_04015 at 4210.433 kb on + strand, within MPMX20_04015 at 4210.469 kb on - strand, within MPMX20_04015 at 4210.564 kb on + strand, within MPMX20_04015 at 4210.582 kb on - strand, within MPMX20_04015 at 4210.665 kb on - strand, within MPMX20_04015 at 4210.764 kb on - strand, within MPMX20_04015 at 4210.913 kb on - strand, within MPMX20_04015
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 4,208,330 - +0.8 4,208,332 + -2.2 4,208,340 - +2.2 4,208,340 - -3.6 4,208,356 + +1.6 4,208,378 + MPMX20_04013 0.12 +1.5 4,208,378 + MPMX20_04013 0.12 -0.5 4,208,378 + MPMX20_04013 0.12 -2.0 4,208,383 + MPMX20_04013 0.12 -0.5 4,208,383 + MPMX20_04013 0.12 -0.8 4,208,386 - MPMX20_04013 0.13 +2.4 4,208,391 - MPMX20_04013 0.13 +1.7 4,208,391 - MPMX20_04013 0.13 -2.8 4,208,455 + MPMX20_04013 0.20 +0.0 4,208,464 - MPMX20_04013 0.21 +2.0 4,208,464 - MPMX20_04013 0.21 -1.0 4,208,464 - MPMX20_04013 0.21 +1.1 4,208,504 + MPMX20_04013 0.26 -3.7 4,208,652 + MPMX20_04013 0.42 -1.7 4,208,670 + MPMX20_04013 0.44 -2.2 4,208,678 - MPMX20_04013 0.45 -1.2 4,208,876 + MPMX20_04013 0.67 -2.5 4,208,900 + MPMX20_04013 0.69 +0.3 4,208,958 + MPMX20_04013 0.76 -0.0 4,209,054 + MPMX20_04013 0.86 -2.0 4,209,054 + MPMX20_04013 0.86 +3.1 4,209,054 + MPMX20_04013 0.86 -2.4 4,209,062 - MPMX20_04013 0.87 -0.8 4,209,062 - MPMX20_04013 0.87 +1.4 4,209,062 - MPMX20_04013 0.87 +1.1 4,209,062 - MPMX20_04013 0.87 +0.3 4,209,126 - -0.2 4,209,160 - -2.3 4,209,269 + -2.2 4,209,295 + -1.7 4,209,295 + -1.6 4,209,303 - -1.9 4,209,303 - +1.1 4,209,303 - -3.5 4,209,303 - -2.6 4,209,303 - +1.4 4,209,303 - -1.7 4,209,305 - +1.2 4,209,339 + +1.6 4,209,347 - -2.0 4,209,347 - -1.7 4,209,364 + MPMX20_04014 0.12 +3.1 4,209,386 - MPMX20_04014 0.15 -0.7 4,209,425 - MPMX20_04014 0.21 -2.4 4,209,432 - MPMX20_04014 0.22 +1.6 4,209,477 - MPMX20_04014 0.28 -4.0 4,209,523 - MPMX20_04014 0.35 +1.8 4,209,530 + MPMX20_04014 0.36 +3.1 4,209,586 + MPMX20_04014 0.44 +2.3 4,209,586 + MPMX20_04014 0.44 -0.5 4,209,616 + MPMX20_04014 0.48 +1.6 4,209,617 - MPMX20_04014 0.48 -2.2 4,209,619 + MPMX20_04014 0.48 +0.5 4,209,619 + MPMX20_04014 0.48 +0.3 4,209,701 + MPMX20_04014 0.60 +2.0 4,209,709 - MPMX20_04014 0.61 +3.2 4,209,709 - MPMX20_04014 0.61 -1.4 4,209,803 + MPMX20_04014 0.75 -1.6 4,209,886 + MPMX20_04014 0.86 +1.8 4,209,887 - MPMX20_04014 0.87 -1.1 4,210,119 - +1.2 4,210,202 + MPMX20_04015 0.14 -1.1 4,210,202 + MPMX20_04015 0.14 +0.3 4,210,202 + MPMX20_04015 0.14 +0.1 4,210,202 + MPMX20_04015 0.14 +1.1 4,210,211 - MPMX20_04015 0.15 +2.7 4,210,218 + MPMX20_04015 0.15 +0.3 4,210,231 - MPMX20_04015 0.16 +1.5 4,210,281 + MPMX20_04015 0.20 +0.3 4,210,301 - MPMX20_04015 0.21 +1.3 4,210,302 - MPMX20_04015 0.22 +2.5 4,210,319 + MPMX20_04015 0.23 -0.5 4,210,384 + MPMX20_04015 0.28 +0.6 4,210,433 + MPMX20_04015 0.32 -0.4 4,210,469 - MPMX20_04015 0.34 -0.8 4,210,564 + MPMX20_04015 0.42 +0.5 4,210,582 - MPMX20_04015 0.43 +1.5 4,210,665 - MPMX20_04015 0.49 +0.8 4,210,764 - MPMX20_04015 0.57 +2.7 4,210,913 - MPMX20_04015 0.68 -2.0
Or see this region's nucleotide sequence