Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03963

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03961 and MPMX20_03962 overlap by 8 nucleotidesMPMX20_03962 and MPMX20_03963 are separated by 5 nucleotidesMPMX20_03963 and MPMX20_03964 overlap by 4 nucleotidesMPMX20_03964 and MPMX20_03965 are separated by 109 nucleotides MPMX20_03961: MPMX20_03961 - hypothetical protein, at 4,161,884 to 4,162,414 _03961 MPMX20_03962: MPMX20_03962 - hypothetical protein, at 4,162,407 to 4,163,315 _03962 MPMX20_03963: MPMX20_03963 - hypothetical protein, at 4,163,321 to 4,163,671 _03963 MPMX20_03964: MPMX20_03964 - hypothetical protein, at 4,163,668 to 4,164,309 _03964 MPMX20_03965: MPMX20_03965 - hypothetical protein, at 4,164,419 to 4,164,886 _03965 Position (kb) 4163 4164Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4162.329 kb on + strand, within MPMX20_03961at 4162.332 kb on - strand, within MPMX20_03961at 4162.368 kb on + strandat 4162.421 kb on + strandat 4162.432 kb on + strandat 4162.435 kb on - strandat 4162.435 kb on - strandat 4162.437 kb on + strandat 4162.437 kb on + strandat 4162.437 kb on + strandat 4162.437 kb on + strandat 4162.445 kb on - strandat 4162.445 kb on - strandat 4162.463 kb on - strandat 4162.464 kb on - strandat 4162.472 kb on + strandat 4162.480 kb on - strandat 4162.507 kb on - strand, within MPMX20_03962at 4162.511 kb on + strand, within MPMX20_03962at 4162.532 kb on - strand, within MPMX20_03962at 4162.567 kb on + strand, within MPMX20_03962at 4162.572 kb on + strand, within MPMX20_03962at 4162.574 kb on + strand, within MPMX20_03962at 4162.575 kb on - strand, within MPMX20_03962at 4162.585 kb on + strand, within MPMX20_03962at 4162.593 kb on - strand, within MPMX20_03962at 4162.593 kb on - strand, within MPMX20_03962at 4162.593 kb on - strand, within MPMX20_03962at 4162.617 kb on + strand, within MPMX20_03962at 4162.619 kb on + strand, within MPMX20_03962at 4162.692 kb on - strand, within MPMX20_03962at 4162.717 kb on + strand, within MPMX20_03962at 4162.717 kb on + strand, within MPMX20_03962at 4162.717 kb on + strand, within MPMX20_03962at 4162.755 kb on + strand, within MPMX20_03962at 4162.774 kb on - strand, within MPMX20_03962at 4162.774 kb on - strand, within MPMX20_03962at 4162.794 kb on + strand, within MPMX20_03962at 4162.814 kb on + strand, within MPMX20_03962at 4162.823 kb on + strand, within MPMX20_03962at 4162.842 kb on + strand, within MPMX20_03962at 4163.008 kb on + strand, within MPMX20_03962at 4163.013 kb on - strand, within MPMX20_03962at 4163.023 kb on + strand, within MPMX20_03962at 4163.025 kb on + strand, within MPMX20_03962at 4163.025 kb on + strand, within MPMX20_03962at 4163.035 kb on + strand, within MPMX20_03962at 4163.035 kb on + strand, within MPMX20_03962at 4163.043 kb on - strand, within MPMX20_03962at 4163.043 kb on - strand, within MPMX20_03962at 4163.043 kb on - strand, within MPMX20_03962at 4163.043 kb on - strand, within MPMX20_03962at 4163.043 kb on - strand, within MPMX20_03962at 4163.043 kb on - strand, within MPMX20_03962at 4163.045 kb on + strand, within MPMX20_03962at 4163.073 kb on - strand, within MPMX20_03962at 4163.134 kb on + strand, within MPMX20_03962at 4163.167 kb on - strand, within MPMX20_03962at 4163.167 kb on - strand, within MPMX20_03962at 4163.171 kb on + strand, within MPMX20_03962at 4163.196 kb on - strand, within MPMX20_03962at 4163.204 kb on + strand, within MPMX20_03962at 4163.209 kb on + strand, within MPMX20_03962at 4163.209 kb on + strand, within MPMX20_03962at 4163.219 kb on + strand, within MPMX20_03962at 4163.317 kb on + strandat 4163.353 kb on + strandat 4163.388 kb on - strand, within MPMX20_03963at 4163.388 kb on - strand, within MPMX20_03963at 4163.453 kb on + strand, within MPMX20_03963at 4163.497 kb on + strand, within MPMX20_03963at 4163.497 kb on + strand, within MPMX20_03963at 4163.505 kb on - strand, within MPMX20_03963at 4163.541 kb on - strand, within MPMX20_03963at 4163.580 kb on + strand, within MPMX20_03963at 4163.620 kb on + strand, within MPMX20_03963at 4163.660 kb on - strandat 4163.673 kb on - strandat 4163.673 kb on - strandat 4163.675 kb on - strandat 4163.679 kb on + strandat 4163.686 kb on - strandat 4163.687 kb on - strandat 4163.718 kb on - strandat 4163.794 kb on + strand, within MPMX20_03964at 4163.794 kb on + strand, within MPMX20_03964at 4163.794 kb on + strand, within MPMX20_03964at 4163.800 kb on - strand, within MPMX20_03964at 4163.802 kb on - strand, within MPMX20_03964at 4163.802 kb on - strand, within MPMX20_03964at 4163.810 kb on - strand, within MPMX20_03964at 4163.838 kb on - strand, within MPMX20_03964at 4163.841 kb on + strand, within MPMX20_03964at 4163.850 kb on + strand, within MPMX20_03964at 4163.851 kb on + strand, within MPMX20_03964at 4163.859 kb on - strand, within MPMX20_03964at 4163.895 kb on + strand, within MPMX20_03964at 4163.926 kb on - strand, within MPMX20_03964at 4163.941 kb on + strand, within MPMX20_03964at 4164.015 kb on + strand, within MPMX20_03964at 4164.077 kb on + strand, within MPMX20_03964at 4164.119 kb on + strand, within MPMX20_03964at 4164.127 kb on - strand, within MPMX20_03964at 4164.185 kb on + strand, within MPMX20_03964at 4164.194 kb on + strand, within MPMX20_03964at 4164.202 kb on - strand, within MPMX20_03964at 4164.204 kb on + strand, within MPMX20_03964at 4164.212 kb on - strand, within MPMX20_03964at 4164.226 kb on - strand, within MPMX20_03964at 4164.229 kb on - strand, within MPMX20_03964at 4164.288 kb on + strandat 4164.362 kb on - strandat 4164.418 kb on + strandat 4164.440 kb on - strandat 4164.442 kb on + strandat 4164.467 kb on - strand, within MPMX20_03965at 4164.494 kb on - strand, within MPMX20_03965at 4164.565 kb on + strand, within MPMX20_03965at 4164.565 kb on + strand, within MPMX20_03965at 4164.565 kb on + strand, within MPMX20_03965at 4164.567 kb on - strand, within MPMX20_03965at 4164.573 kb on - strand, within MPMX20_03965at 4164.573 kb on - strand, within MPMX20_03965at 4164.573 kb on - strand, within MPMX20_03965at 4164.573 kb on - strand, within MPMX20_03965

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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4,162,329 + MPMX20_03961 0.84 -3.9
4,162,332 - MPMX20_03961 0.84 -3.0
4,162,368 + -1.4
4,162,421 + +2.1
4,162,432 + -2.4
4,162,435 - +0.4
4,162,435 - -2.6
4,162,437 + +1.2
4,162,437 + -2.5
4,162,437 + -1.2
4,162,437 + -1.6
4,162,445 - -1.1
4,162,445 - +2.0
4,162,463 - -2.4
4,162,464 - +1.8
4,162,472 + +2.1
4,162,480 - -1.0
4,162,507 - MPMX20_03962 0.11 -1.4
4,162,511 + MPMX20_03962 0.11 -2.3
4,162,532 - MPMX20_03962 0.14 -0.6
4,162,567 + MPMX20_03962 0.18 +2.5
4,162,572 + MPMX20_03962 0.18 -2.8
4,162,574 + MPMX20_03962 0.18 +1.0
4,162,575 - MPMX20_03962 0.18 -3.0
4,162,585 + MPMX20_03962 0.20 -0.8
4,162,593 - MPMX20_03962 0.20 -0.4
4,162,593 - MPMX20_03962 0.20 +2.2
4,162,593 - MPMX20_03962 0.20 -0.8
4,162,617 + MPMX20_03962 0.23 +2.6
4,162,619 + MPMX20_03962 0.23 +1.4
4,162,692 - MPMX20_03962 0.31 -3.3
4,162,717 + MPMX20_03962 0.34 -3.2
4,162,717 + MPMX20_03962 0.34 -0.9
4,162,717 + MPMX20_03962 0.34 -4.0
4,162,755 + MPMX20_03962 0.38 -0.2
4,162,774 - MPMX20_03962 0.40 -0.0
4,162,774 - MPMX20_03962 0.40 -1.6
4,162,794 + MPMX20_03962 0.43 -1.9
4,162,814 + MPMX20_03962 0.45 +0.5
4,162,823 + MPMX20_03962 0.46 +0.5
4,162,842 + MPMX20_03962 0.48 +1.9
4,163,008 + MPMX20_03962 0.66 +0.2
4,163,013 - MPMX20_03962 0.67 +1.9
4,163,023 + MPMX20_03962 0.68 -0.4
4,163,025 + MPMX20_03962 0.68 +1.8
4,163,025 + MPMX20_03962 0.68 -3.4
4,163,035 + MPMX20_03962 0.69 -0.4
4,163,035 + MPMX20_03962 0.69 +1.8
4,163,043 - MPMX20_03962 0.70 +1.5
4,163,043 - MPMX20_03962 0.70 +2.0
4,163,043 - MPMX20_03962 0.70 -3.8
4,163,043 - MPMX20_03962 0.70 -0.1
4,163,043 - MPMX20_03962 0.70 +0.2
4,163,043 - MPMX20_03962 0.70 -3.4
4,163,045 + MPMX20_03962 0.70 +1.0
4,163,073 - MPMX20_03962 0.73 +0.9
4,163,134 + MPMX20_03962 0.80 -2.3
4,163,167 - MPMX20_03962 0.84 -2.1
4,163,167 - MPMX20_03962 0.84 -0.1
4,163,171 + MPMX20_03962 0.84 -2.3
4,163,196 - MPMX20_03962 0.87 +1.2
4,163,204 + MPMX20_03962 0.88 -1.1
4,163,209 + MPMX20_03962 0.88 -1.5
4,163,209 + MPMX20_03962 0.88 +0.9
4,163,219 + MPMX20_03962 0.89 -2.7
4,163,317 + -1.5
4,163,353 + -0.7
4,163,388 - MPMX20_03963 0.19 -3.0
4,163,388 - MPMX20_03963 0.19 -0.6
4,163,453 + MPMX20_03963 0.38 -2.7
4,163,497 + MPMX20_03963 0.50 -2.3
4,163,497 + MPMX20_03963 0.50 -3.0
4,163,505 - MPMX20_03963 0.52 -2.6
4,163,541 - MPMX20_03963 0.63 -0.8
4,163,580 + MPMX20_03963 0.74 -2.8
4,163,620 + MPMX20_03963 0.85 -1.5
4,163,660 - -2.1
4,163,673 - -0.3
4,163,673 - +1.5
4,163,675 - -1.1
4,163,679 + -2.5
4,163,686 - -1.5
4,163,687 - +1.3
4,163,718 - +2.8
4,163,794 + MPMX20_03964 0.20 -0.7
4,163,794 + MPMX20_03964 0.20 -1.7
4,163,794 + MPMX20_03964 0.20 -2.3
4,163,800 - MPMX20_03964 0.21 +0.2
4,163,802 - MPMX20_03964 0.21 +2.2
4,163,802 - MPMX20_03964 0.21 +2.5
4,163,810 - MPMX20_03964 0.22 -3.0
4,163,838 - MPMX20_03964 0.26 +2.5
4,163,841 + MPMX20_03964 0.27 +1.0
4,163,850 + MPMX20_03964 0.28 -1.8
4,163,851 + MPMX20_03964 0.29 -1.6
4,163,859 - MPMX20_03964 0.30 -1.5
4,163,895 + MPMX20_03964 0.35 -1.4
4,163,926 - MPMX20_03964 0.40 -0.1
4,163,941 + MPMX20_03964 0.43 +2.8
4,164,015 + MPMX20_03964 0.54 +3.5
4,164,077 + MPMX20_03964 0.64 -2.7
4,164,119 + MPMX20_03964 0.70 +2.1
4,164,127 - MPMX20_03964 0.71 -3.8
4,164,185 + MPMX20_03964 0.81 +1.0
4,164,194 + MPMX20_03964 0.82 -0.1
4,164,202 - MPMX20_03964 0.83 +0.2
4,164,204 + MPMX20_03964 0.83 +0.4
4,164,212 - MPMX20_03964 0.85 -1.0
4,164,226 - MPMX20_03964 0.87 -2.3
4,164,229 - MPMX20_03964 0.87 -2.6
4,164,288 + -0.0
4,164,362 - -3.0
4,164,418 + -1.5
4,164,440 - +0.2
4,164,442 + -1.6
4,164,467 - MPMX20_03965 0.10 -0.4
4,164,494 - MPMX20_03965 0.16 +1.6
4,164,565 + MPMX20_03965 0.31 +1.6
4,164,565 + MPMX20_03965 0.31 -1.0
4,164,565 + MPMX20_03965 0.31 +1.0
4,164,567 - MPMX20_03965 0.32 -0.6
4,164,573 - MPMX20_03965 0.33 -3.8
4,164,573 - MPMX20_03965 0.33 -0.8
4,164,573 - MPMX20_03965 0.33 -2.2
4,164,573 - MPMX20_03965 0.33 -1.4

Or see this region's nucleotide sequence