Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03873 and MPMX20_03874 overlap by 4 nucleotides MPMX20_03874 and MPMX20_03875 overlap by 4 nucleotides MPMX20_03875 and MPMX20_03876 are separated by 384 nucleotides
MPMX20_03873: MPMX20_03873 - Iron-uptake system permease protein FeuC, at 4,080,772 to 4,081,812
_03873
MPMX20_03874: MPMX20_03874 - putative siderophore transport system permease protein YfiZ, at 4,081,809 to 4,082,792
_03874
MPMX20_03875: MPMX20_03875 - putative siderophore transport system ATP-binding protein YusV, at 4,082,789 to 4,083,601
_03875
MPMX20_03876: MPMX20_03876 - Metal-pseudopaline receptor CntO, at 4,083,986 to 4,086,127
_03876
Position (kb)
4082
4083
4084 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 4081.805 kb on - strand at 4081.828 kb on - strand at 4081.850 kb on - strand at 4081.857 kb on - strand at 4081.891 kb on + strand at 4081.891 kb on + strand at 4081.891 kb on - strand at 4081.899 kb on - strand at 4081.899 kb on - strand at 4081.899 kb on - strand at 4081.899 kb on - strand at 4081.939 kb on + strand, within MPMX20_03874 at 4081.940 kb on - strand, within MPMX20_03874 at 4081.947 kb on - strand, within MPMX20_03874 at 4081.947 kb on - strand, within MPMX20_03874 at 4081.984 kb on - strand, within MPMX20_03874 at 4082.012 kb on + strand, within MPMX20_03874 at 4082.067 kb on - strand, within MPMX20_03874 at 4082.067 kb on - strand, within MPMX20_03874 at 4082.101 kb on - strand, within MPMX20_03874 at 4082.114 kb on + strand, within MPMX20_03874 at 4082.129 kb on - strand, within MPMX20_03874 at 4082.129 kb on - strand, within MPMX20_03874 at 4082.129 kb on - strand, within MPMX20_03874 at 4082.175 kb on + strand, within MPMX20_03874 at 4082.271 kb on + strand, within MPMX20_03874 at 4082.271 kb on + strand, within MPMX20_03874 at 4082.288 kb on + strand, within MPMX20_03874 at 4082.295 kb on + strand, within MPMX20_03874 at 4082.295 kb on + strand, within MPMX20_03874 at 4082.295 kb on + strand, within MPMX20_03874 at 4082.296 kb on - strand, within MPMX20_03874 at 4082.303 kb on - strand, within MPMX20_03874 at 4082.407 kb on + strand, within MPMX20_03874 at 4082.557 kb on - strand, within MPMX20_03874 at 4082.585 kb on + strand, within MPMX20_03874 at 4082.585 kb on + strand, within MPMX20_03874 at 4082.585 kb on + strand, within MPMX20_03874 at 4082.593 kb on - strand, within MPMX20_03874 at 4082.719 kb on + strand at 4082.737 kb on - strand at 4082.845 kb on + strand at 4082.853 kb on - strand at 4082.868 kb on + strand at 4082.903 kb on + strand, within MPMX20_03875 at 4082.903 kb on + strand, within MPMX20_03875 at 4082.911 kb on - strand, within MPMX20_03875 at 4082.918 kb on - strand, within MPMX20_03875 at 4082.932 kb on - strand, within MPMX20_03875 at 4082.932 kb on - strand, within MPMX20_03875 at 4082.939 kb on - strand, within MPMX20_03875 at 4083.033 kb on + strand, within MPMX20_03875 at 4083.043 kb on + strand, within MPMX20_03875 at 4083.051 kb on - strand, within MPMX20_03875 at 4083.109 kb on - strand, within MPMX20_03875 at 4083.133 kb on + strand, within MPMX20_03875 at 4083.236 kb on - strand, within MPMX20_03875 at 4083.293 kb on - strand, within MPMX20_03875 at 4083.304 kb on + strand, within MPMX20_03875 at 4083.305 kb on + strand, within MPMX20_03875 at 4083.312 kb on - strand, within MPMX20_03875 at 4083.349 kb on + strand, within MPMX20_03875 at 4083.357 kb on - strand, within MPMX20_03875 at 4083.357 kb on - strand, within MPMX20_03875 at 4083.357 kb on - strand, within MPMX20_03875 at 4083.393 kb on + strand, within MPMX20_03875 at 4083.411 kb on + strand, within MPMX20_03875 at 4083.438 kb on + strand, within MPMX20_03875 at 4083.443 kb on + strand, within MPMX20_03875 at 4083.479 kb on + strand, within MPMX20_03875 at 4083.481 kb on + strand, within MPMX20_03875 at 4083.574 kb on + strand at 4083.577 kb on - strand at 4083.590 kb on + strand at 4083.598 kb on - strand at 4083.598 kb on - strand at 4083.673 kb on + strand at 4083.708 kb on + strand at 4083.794 kb on + strand at 4083.802 kb on - strand at 4083.802 kb on - strand at 4083.802 kb on - strand at 4083.914 kb on + strand at 4083.949 kb on + strand at 4083.957 kb on - strand at 4083.992 kb on + strand at 4084.001 kb on + strand at 4084.001 kb on + strand at 4084.001 kb on - strand at 4084.009 kb on - strand at 4084.035 kb on + strand at 4084.068 kb on - strand at 4084.078 kb on - strand at 4084.085 kb on + strand at 4084.093 kb on - strand at 4084.120 kb on + strand at 4084.160 kb on + strand at 4084.204 kb on - strand, within MPMX20_03876 at 4084.214 kb on - strand, within MPMX20_03876 at 4084.267 kb on + strand, within MPMX20_03876 at 4084.275 kb on - strand, within MPMX20_03876 at 4084.275 kb on - strand, within MPMX20_03876 at 4084.306 kb on - strand, within MPMX20_03876 at 4084.306 kb on - strand, within MPMX20_03876 at 4084.349 kb on - strand, within MPMX20_03876 at 4084.373 kb on + strand, within MPMX20_03876 at 4084.381 kb on - strand, within MPMX20_03876 at 4084.397 kb on + strand, within MPMX20_03876 at 4084.418 kb on - strand, within MPMX20_03876 at 4084.418 kb on - strand, within MPMX20_03876 at 4084.418 kb on - strand, within MPMX20_03876 at 4084.418 kb on - strand, within MPMX20_03876 at 4084.418 kb on - strand, within MPMX20_03876 at 4084.421 kb on + strand, within MPMX20_03876 at 4084.463 kb on - strand, within MPMX20_03876 at 4084.487 kb on + strand, within MPMX20_03876 at 4084.557 kb on - strand, within MPMX20_03876 at 4084.574 kb on + strand, within MPMX20_03876 at 4084.577 kb on - strand, within MPMX20_03876 at 4084.577 kb on - strand, within MPMX20_03876
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 4,081,805 - +2.2 4,081,828 - +3.5 4,081,850 - -3.2 4,081,857 - -1.8 4,081,891 + -3.6 4,081,891 + +1.5 4,081,891 - -1.4 4,081,899 - +1.7 4,081,899 - -1.9 4,081,899 - +1.3 4,081,899 - +1.0 4,081,939 + MPMX20_03874 0.13 +1.3 4,081,940 - MPMX20_03874 0.13 -0.3 4,081,947 - MPMX20_03874 0.14 +4.1 4,081,947 - MPMX20_03874 0.14 -0.0 4,081,984 - MPMX20_03874 0.18 -2.8 4,082,012 + MPMX20_03874 0.21 -1.8 4,082,067 - MPMX20_03874 0.26 -3.2 4,082,067 - MPMX20_03874 0.26 -2.2 4,082,101 - MPMX20_03874 0.30 -0.8 4,082,114 + MPMX20_03874 0.31 -0.6 4,082,129 - MPMX20_03874 0.33 -1.2 4,082,129 - MPMX20_03874 0.33 -1.9 4,082,129 - MPMX20_03874 0.33 -1.6 4,082,175 + MPMX20_03874 0.37 -0.0 4,082,271 + MPMX20_03874 0.47 +0.9 4,082,271 + MPMX20_03874 0.47 -2.7 4,082,288 + MPMX20_03874 0.49 -1.7 4,082,295 + MPMX20_03874 0.49 +2.2 4,082,295 + MPMX20_03874 0.49 -0.5 4,082,295 + MPMX20_03874 0.49 +0.4 4,082,296 - MPMX20_03874 0.49 +0.3 4,082,303 - MPMX20_03874 0.50 -1.3 4,082,407 + MPMX20_03874 0.61 -2.3 4,082,557 - MPMX20_03874 0.76 +0.4 4,082,585 + MPMX20_03874 0.79 -2.3 4,082,585 + MPMX20_03874 0.79 -2.4 4,082,585 + MPMX20_03874 0.79 -2.0 4,082,593 - MPMX20_03874 0.80 +1.1 4,082,719 + +1.8 4,082,737 - +4.5 4,082,845 + -3.8 4,082,853 - -2.5 4,082,868 + -0.8 4,082,903 + MPMX20_03875 0.14 +0.7 4,082,903 + MPMX20_03875 0.14 -2.1 4,082,911 - MPMX20_03875 0.15 -0.6 4,082,918 - MPMX20_03875 0.16 +1.0 4,082,932 - MPMX20_03875 0.18 +0.3 4,082,932 - MPMX20_03875 0.18 -0.8 4,082,939 - MPMX20_03875 0.18 -1.6 4,083,033 + MPMX20_03875 0.30 +2.9 4,083,043 + MPMX20_03875 0.31 -1.4 4,083,051 - MPMX20_03875 0.32 +1.8 4,083,109 - MPMX20_03875 0.39 +0.5 4,083,133 + MPMX20_03875 0.42 -0.5 4,083,236 - MPMX20_03875 0.55 +3.1 4,083,293 - MPMX20_03875 0.62 +2.0 4,083,304 + MPMX20_03875 0.63 -3.5 4,083,305 + MPMX20_03875 0.63 +1.8 4,083,312 - MPMX20_03875 0.64 +3.5 4,083,349 + MPMX20_03875 0.69 -3.7 4,083,357 - MPMX20_03875 0.70 +0.5 4,083,357 - MPMX20_03875 0.70 -0.8 4,083,357 - MPMX20_03875 0.70 +0.2 4,083,393 + MPMX20_03875 0.74 -1.9 4,083,411 + MPMX20_03875 0.77 +1.8 4,083,438 + MPMX20_03875 0.80 +4.2 4,083,443 + MPMX20_03875 0.80 +1.7 4,083,479 + MPMX20_03875 0.85 +1.4 4,083,481 + MPMX20_03875 0.85 +0.7 4,083,574 + -0.2 4,083,577 - -0.3 4,083,590 + -3.0 4,083,598 - +0.7 4,083,598 - +2.2 4,083,673 + +0.7 4,083,708 + -1.4 4,083,794 + +1.9 4,083,802 - +2.7 4,083,802 - +2.9 4,083,802 - -3.7 4,083,914 + -1.8 4,083,949 + -1.8 4,083,957 - -0.7 4,083,992 + -0.8 4,084,001 + -2.7 4,084,001 + -2.9 4,084,001 - +2.1 4,084,009 - -2.2 4,084,035 + -0.6 4,084,068 - -1.1 4,084,078 - +3.2 4,084,085 + -2.0 4,084,093 - +1.9 4,084,120 + -0.5 4,084,160 + +1.0 4,084,204 - MPMX20_03876 0.10 +2.0 4,084,214 - MPMX20_03876 0.11 -0.4 4,084,267 + MPMX20_03876 0.13 -2.4 4,084,275 - MPMX20_03876 0.13 -1.5 4,084,275 - MPMX20_03876 0.13 +1.8 4,084,306 - MPMX20_03876 0.15 -0.1 4,084,306 - MPMX20_03876 0.15 +0.2 4,084,349 - MPMX20_03876 0.17 +0.7 4,084,373 + MPMX20_03876 0.18 +2.2 4,084,381 - MPMX20_03876 0.18 -2.4 4,084,397 + MPMX20_03876 0.19 -1.7 4,084,418 - MPMX20_03876 0.20 -2.5 4,084,418 - MPMX20_03876 0.20 +1.0 4,084,418 - MPMX20_03876 0.20 -1.0 4,084,418 - MPMX20_03876 0.20 -3.5 4,084,418 - MPMX20_03876 0.20 -0.1 4,084,421 + MPMX20_03876 0.20 -2.9 4,084,463 - MPMX20_03876 0.22 -0.4 4,084,487 + MPMX20_03876 0.23 -0.5 4,084,557 - MPMX20_03876 0.27 +1.2 4,084,574 + MPMX20_03876 0.27 +1.4 4,084,577 - MPMX20_03876 0.28 -0.7 4,084,577 - MPMX20_03876 0.28 +1.7
Or see this region's nucleotide sequence