Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03852 and MPMX20_03853 are separated by 149 nucleotides MPMX20_03853 and MPMX20_03854 are separated by 47 nucleotides MPMX20_03854 and MPMX20_03855 are separated by 195 nucleotides
MPMX20_03852: MPMX20_03852 - Cystathionine beta-lyase MetC, at 4,056,050 to 4,057,237
_03852
MPMX20_03853: MPMX20_03853 - Inner membrane protein YghB, at 4,057,387 to 4,058,046
_03853
MPMX20_03854: MPMX20_03854 - HTH-type transcriptional activator RhaS, at 4,058,094 to 4,058,993
_03854
MPMX20_03855: MPMX20_03855 - Alcohol dehydrogenase YqhD, at 4,059,189 to 4,060,352
_03855
Position (kb)
4058
4059 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 4057.120 kb on + strand at 4057.162 kb on - strand at 4057.218 kb on + strand at 4057.218 kb on + strand at 4057.218 kb on + strand at 4057.225 kb on - strand at 4057.226 kb on - strand at 4057.226 kb on - strand at 4057.259 kb on + strand at 4057.316 kb on + strand at 4057.342 kb on + strand at 4057.350 kb on - strand at 4057.350 kb on - strand at 4057.359 kb on - strand at 4057.370 kb on + strand at 4057.383 kb on + strand at 4057.391 kb on - strand at 4057.391 kb on - strand at 4057.391 kb on - strand at 4057.391 kb on - strand at 4057.443 kb on + strand at 4057.457 kb on - strand, within MPMX20_03853 at 4057.457 kb on - strand, within MPMX20_03853 at 4057.462 kb on + strand, within MPMX20_03853 at 4057.587 kb on - strand, within MPMX20_03853 at 4057.608 kb on + strand, within MPMX20_03853 at 4057.611 kb on + strand, within MPMX20_03853 at 4057.611 kb on - strand, within MPMX20_03853 at 4057.619 kb on - strand, within MPMX20_03853 at 4057.800 kb on + strand, within MPMX20_03853 at 4057.820 kb on + strand, within MPMX20_03853 at 4057.872 kb on + strand, within MPMX20_03853 at 4057.872 kb on + strand, within MPMX20_03853 at 4057.877 kb on + strand, within MPMX20_03853 at 4057.877 kb on + strand, within MPMX20_03853 at 4057.880 kb on - strand, within MPMX20_03853 at 4057.903 kb on - strand, within MPMX20_03853 at 4057.911 kb on + strand, within MPMX20_03853 at 4057.937 kb on + strand, within MPMX20_03853 at 4057.948 kb on + strand, within MPMX20_03853 at 4057.959 kb on + strand, within MPMX20_03853 at 4057.994 kb on - strand at 4058.072 kb on - strand at 4058.078 kb on + strand at 4058.090 kb on + strand at 4058.110 kb on + strand at 4058.126 kb on + strand at 4058.228 kb on - strand, within MPMX20_03854 at 4058.251 kb on + strand, within MPMX20_03854 at 4058.259 kb on - strand, within MPMX20_03854 at 4058.293 kb on + strand, within MPMX20_03854 at 4058.298 kb on + strand, within MPMX20_03854 at 4058.410 kb on + strand, within MPMX20_03854 at 4058.437 kb on + strand, within MPMX20_03854 at 4058.581 kb on + strand, within MPMX20_03854 at 4058.591 kb on + strand, within MPMX20_03854 at 4058.601 kb on - strand, within MPMX20_03854 at 4058.607 kb on - strand, within MPMX20_03854 at 4058.745 kb on + strand, within MPMX20_03854 at 4058.793 kb on - strand, within MPMX20_03854 at 4058.801 kb on + strand, within MPMX20_03854 at 4058.892 kb on - strand, within MPMX20_03854 at 4058.955 kb on - strand at 4058.974 kb on - strand at 4059.113 kb on - strand at 4059.113 kb on - strand at 4059.113 kb on - strand at 4059.128 kb on - strand at 4059.136 kb on - strand at 4059.183 kb on - strand at 4059.206 kb on + strand at 4059.263 kb on + strand at 4059.271 kb on - strand at 4059.271 kb on - strand at 4059.271 kb on - strand at 4059.335 kb on + strand, within MPMX20_03855 at 4059.335 kb on + strand, within MPMX20_03855 at 4059.335 kb on + strand, within MPMX20_03855 at 4059.343 kb on - strand, within MPMX20_03855 at 4059.343 kb on - strand, within MPMX20_03855 at 4059.343 kb on - strand, within MPMX20_03855 at 4059.343 kb on - strand, within MPMX20_03855 at 4059.355 kb on + strand, within MPMX20_03855 at 4059.363 kb on - strand, within MPMX20_03855 at 4059.385 kb on + strand, within MPMX20_03855 at 4059.393 kb on - strand, within MPMX20_03855 at 4059.413 kb on - strand, within MPMX20_03855 at 4059.485 kb on - strand, within MPMX20_03855 at 4059.515 kb on - strand, within MPMX20_03855 at 4059.525 kb on - strand, within MPMX20_03855 at 4059.526 kb on + strand, within MPMX20_03855 at 4059.526 kb on + strand, within MPMX20_03855 at 4059.526 kb on + strand, within MPMX20_03855 at 4059.526 kb on + strand, within MPMX20_03855 at 4059.526 kb on + strand, within MPMX20_03855 at 4059.526 kb on + strand, within MPMX20_03855 at 4059.526 kb on + strand, within MPMX20_03855 at 4059.526 kb on + strand, within MPMX20_03855 at 4059.526 kb on + strand, within MPMX20_03855 at 4059.526 kb on + strand, within MPMX20_03855 at 4059.534 kb on - strand, within MPMX20_03855 at 4059.534 kb on - strand, within MPMX20_03855 at 4059.534 kb on - strand, within MPMX20_03855 at 4059.534 kb on - strand, within MPMX20_03855 at 4059.534 kb on - strand, within MPMX20_03855 at 4059.534 kb on - strand, within MPMX20_03855 at 4059.589 kb on + strand, within MPMX20_03855 at 4059.624 kb on - strand, within MPMX20_03855 at 4059.719 kb on + strand, within MPMX20_03855 at 4059.727 kb on + strand, within MPMX20_03855 at 4059.735 kb on - strand, within MPMX20_03855 at 4059.735 kb on - strand, within MPMX20_03855 at 4059.757 kb on - strand, within MPMX20_03855 at 4059.784 kb on + strand, within MPMX20_03855 at 4059.784 kb on + strand, within MPMX20_03855 at 4059.784 kb on + strand, within MPMX20_03855 at 4059.784 kb on + strand, within MPMX20_03855 at 4059.792 kb on - strand, within MPMX20_03855 at 4059.792 kb on - strand, within MPMX20_03855 at 4059.879 kb on + strand, within MPMX20_03855 at 4059.917 kb on + strand, within MPMX20_03855 at 4059.923 kb on - strand, within MPMX20_03855 at 4059.974 kb on + strand, within MPMX20_03855 at 4059.974 kb on + strand, within MPMX20_03855 at 4059.985 kb on + strand, within MPMX20_03855 at 4059.985 kb on + strand, within MPMX20_03855 at 4059.993 kb on - strand, within MPMX20_03855
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 4,057,120 + -2.9 4,057,162 - -3.4 4,057,218 + +0.5 4,057,218 + +1.0 4,057,218 + -1.0 4,057,225 - +1.9 4,057,226 - -3.0 4,057,226 - -0.9 4,057,259 + +0.4 4,057,316 + +2.0 4,057,342 + -3.9 4,057,350 - -0.2 4,057,350 - -2.7 4,057,359 - -1.0 4,057,370 + -2.9 4,057,383 + +1.9 4,057,391 - +0.1 4,057,391 - -3.2 4,057,391 - -0.4 4,057,391 - -0.7 4,057,443 + +1.2 4,057,457 - MPMX20_03853 0.11 +0.6 4,057,457 - MPMX20_03853 0.11 -2.4 4,057,462 + MPMX20_03853 0.11 -1.4 4,057,587 - MPMX20_03853 0.30 +1.1 4,057,608 + MPMX20_03853 0.33 +0.2 4,057,611 + MPMX20_03853 0.34 +0.3 4,057,611 - MPMX20_03853 0.34 -3.7 4,057,619 - MPMX20_03853 0.35 -0.7 4,057,800 + MPMX20_03853 0.63 -2.8 4,057,820 + MPMX20_03853 0.66 +2.5 4,057,872 + MPMX20_03853 0.73 -1.3 4,057,872 + MPMX20_03853 0.73 +1.5 4,057,877 + MPMX20_03853 0.74 +2.3 4,057,877 + MPMX20_03853 0.74 +2.4 4,057,880 - MPMX20_03853 0.75 +0.1 4,057,903 - MPMX20_03853 0.78 -0.0 4,057,911 + MPMX20_03853 0.79 +0.4 4,057,937 + MPMX20_03853 0.83 -2.8 4,057,948 + MPMX20_03853 0.85 -2.0 4,057,959 + MPMX20_03853 0.87 -0.4 4,057,994 - -2.0 4,058,072 - -3.6 4,058,078 + +0.9 4,058,090 + +2.6 4,058,110 + -2.6 4,058,126 + -0.8 4,058,228 - MPMX20_03854 0.15 +0.4 4,058,251 + MPMX20_03854 0.17 +0.7 4,058,259 - MPMX20_03854 0.18 +3.9 4,058,293 + MPMX20_03854 0.22 +0.9 4,058,298 + MPMX20_03854 0.23 +0.9 4,058,410 + MPMX20_03854 0.35 +0.6 4,058,437 + MPMX20_03854 0.38 +1.6 4,058,581 + MPMX20_03854 0.54 -1.8 4,058,591 + MPMX20_03854 0.55 -0.5 4,058,601 - MPMX20_03854 0.56 +1.9 4,058,607 - MPMX20_03854 0.57 -2.8 4,058,745 + MPMX20_03854 0.72 +0.9 4,058,793 - MPMX20_03854 0.78 +2.7 4,058,801 + MPMX20_03854 0.79 +0.6 4,058,892 - MPMX20_03854 0.89 -1.7 4,058,955 - -0.4 4,058,974 - -0.2 4,059,113 - +0.3 4,059,113 - +0.5 4,059,113 - +0.1 4,059,128 - +0.4 4,059,136 - +0.7 4,059,183 - -0.2 4,059,206 + +0.9 4,059,263 + -1.6 4,059,271 - -0.9 4,059,271 - -3.0 4,059,271 - +1.4 4,059,335 + MPMX20_03855 0.13 -2.2 4,059,335 + MPMX20_03855 0.13 +0.4 4,059,335 + MPMX20_03855 0.13 +2.0 4,059,343 - MPMX20_03855 0.13 -3.5 4,059,343 - MPMX20_03855 0.13 -3.2 4,059,343 - MPMX20_03855 0.13 -1.6 4,059,343 - MPMX20_03855 0.13 +0.4 4,059,355 + MPMX20_03855 0.14 +0.5 4,059,363 - MPMX20_03855 0.15 +1.0 4,059,385 + MPMX20_03855 0.17 -3.4 4,059,393 - MPMX20_03855 0.18 -1.0 4,059,413 - MPMX20_03855 0.19 -1.1 4,059,485 - MPMX20_03855 0.25 -2.2 4,059,515 - MPMX20_03855 0.28 +0.6 4,059,525 - MPMX20_03855 0.29 -0.0 4,059,526 + MPMX20_03855 0.29 -0.9 4,059,526 + MPMX20_03855 0.29 +4.4 4,059,526 + MPMX20_03855 0.29 +0.9 4,059,526 + MPMX20_03855 0.29 +1.0 4,059,526 + MPMX20_03855 0.29 +1.9 4,059,526 + MPMX20_03855 0.29 -1.3 4,059,526 + MPMX20_03855 0.29 -1.2 4,059,526 + MPMX20_03855 0.29 -3.1 4,059,526 + MPMX20_03855 0.29 -2.1 4,059,526 + MPMX20_03855 0.29 -2.2 4,059,534 - MPMX20_03855 0.30 -1.7 4,059,534 - MPMX20_03855 0.30 +2.1 4,059,534 - MPMX20_03855 0.30 -0.6 4,059,534 - MPMX20_03855 0.30 -3.6 4,059,534 - MPMX20_03855 0.30 +0.4 4,059,534 - MPMX20_03855 0.30 +0.1 4,059,589 + MPMX20_03855 0.34 +0.3 4,059,624 - MPMX20_03855 0.37 +0.2 4,059,719 + MPMX20_03855 0.46 -0.7 4,059,727 + MPMX20_03855 0.46 +1.2 4,059,735 - MPMX20_03855 0.47 +3.5 4,059,735 - MPMX20_03855 0.47 +0.5 4,059,757 - MPMX20_03855 0.49 +1.0 4,059,784 + MPMX20_03855 0.51 -1.2 4,059,784 + MPMX20_03855 0.51 -2.4 4,059,784 + MPMX20_03855 0.51 -2.8 4,059,784 + MPMX20_03855 0.51 -1.5 4,059,792 - MPMX20_03855 0.52 +2.3 4,059,792 - MPMX20_03855 0.52 +1.8 4,059,879 + MPMX20_03855 0.59 -2.8 4,059,917 + MPMX20_03855 0.63 -3.5 4,059,923 - MPMX20_03855 0.63 +1.0 4,059,974 + MPMX20_03855 0.67 +2.6 4,059,974 + MPMX20_03855 0.67 -2.2 4,059,985 + MPMX20_03855 0.68 -0.1 4,059,985 + MPMX20_03855 0.68 -1.9 4,059,993 - MPMX20_03855 0.69 +0.2
Or see this region's nucleotide sequence