Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03854

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03852 and MPMX20_03853 are separated by 149 nucleotidesMPMX20_03853 and MPMX20_03854 are separated by 47 nucleotidesMPMX20_03854 and MPMX20_03855 are separated by 195 nucleotides MPMX20_03852: MPMX20_03852 - Cystathionine beta-lyase MetC, at 4,056,050 to 4,057,237 _03852 MPMX20_03853: MPMX20_03853 - Inner membrane protein YghB, at 4,057,387 to 4,058,046 _03853 MPMX20_03854: MPMX20_03854 - HTH-type transcriptional activator RhaS, at 4,058,094 to 4,058,993 _03854 MPMX20_03855: MPMX20_03855 - Alcohol dehydrogenase YqhD, at 4,059,189 to 4,060,352 _03855 Position (kb) 4058 4059Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 4057.120 kb on + strandat 4057.162 kb on - strandat 4057.218 kb on + strandat 4057.218 kb on + strandat 4057.218 kb on + strandat 4057.225 kb on - strandat 4057.226 kb on - strandat 4057.226 kb on - strandat 4057.259 kb on + strandat 4057.316 kb on + strandat 4057.342 kb on + strandat 4057.350 kb on - strandat 4057.350 kb on - strandat 4057.359 kb on - strandat 4057.370 kb on + strandat 4057.383 kb on + strandat 4057.391 kb on - strandat 4057.391 kb on - strandat 4057.391 kb on - strandat 4057.391 kb on - strandat 4057.443 kb on + strandat 4057.457 kb on - strand, within MPMX20_03853at 4057.457 kb on - strand, within MPMX20_03853at 4057.462 kb on + strand, within MPMX20_03853at 4057.587 kb on - strand, within MPMX20_03853at 4057.608 kb on + strand, within MPMX20_03853at 4057.611 kb on + strand, within MPMX20_03853at 4057.611 kb on - strand, within MPMX20_03853at 4057.619 kb on - strand, within MPMX20_03853at 4057.800 kb on + strand, within MPMX20_03853at 4057.820 kb on + strand, within MPMX20_03853at 4057.872 kb on + strand, within MPMX20_03853at 4057.872 kb on + strand, within MPMX20_03853at 4057.877 kb on + strand, within MPMX20_03853at 4057.877 kb on + strand, within MPMX20_03853at 4057.880 kb on - strand, within MPMX20_03853at 4057.903 kb on - strand, within MPMX20_03853at 4057.911 kb on + strand, within MPMX20_03853at 4057.937 kb on + strand, within MPMX20_03853at 4057.948 kb on + strand, within MPMX20_03853at 4057.959 kb on + strand, within MPMX20_03853at 4057.994 kb on - strandat 4058.072 kb on - strandat 4058.078 kb on + strandat 4058.090 kb on + strandat 4058.110 kb on + strandat 4058.126 kb on + strandat 4058.228 kb on - strand, within MPMX20_03854at 4058.251 kb on + strand, within MPMX20_03854at 4058.259 kb on - strand, within MPMX20_03854at 4058.293 kb on + strand, within MPMX20_03854at 4058.298 kb on + strand, within MPMX20_03854at 4058.410 kb on + strand, within MPMX20_03854at 4058.437 kb on + strand, within MPMX20_03854at 4058.581 kb on + strand, within MPMX20_03854at 4058.591 kb on + strand, within MPMX20_03854at 4058.601 kb on - strand, within MPMX20_03854at 4058.607 kb on - strand, within MPMX20_03854at 4058.745 kb on + strand, within MPMX20_03854at 4058.793 kb on - strand, within MPMX20_03854at 4058.801 kb on + strand, within MPMX20_03854at 4058.892 kb on - strand, within MPMX20_03854at 4058.955 kb on - strandat 4058.974 kb on - strandat 4059.113 kb on - strandat 4059.113 kb on - strandat 4059.113 kb on - strandat 4059.128 kb on - strandat 4059.136 kb on - strandat 4059.183 kb on - strandat 4059.206 kb on + strandat 4059.263 kb on + strandat 4059.271 kb on - strandat 4059.271 kb on - strandat 4059.271 kb on - strandat 4059.335 kb on + strand, within MPMX20_03855at 4059.335 kb on + strand, within MPMX20_03855at 4059.335 kb on + strand, within MPMX20_03855at 4059.343 kb on - strand, within MPMX20_03855at 4059.343 kb on - strand, within MPMX20_03855at 4059.343 kb on - strand, within MPMX20_03855at 4059.343 kb on - strand, within MPMX20_03855at 4059.355 kb on + strand, within MPMX20_03855at 4059.363 kb on - strand, within MPMX20_03855at 4059.385 kb on + strand, within MPMX20_03855at 4059.393 kb on - strand, within MPMX20_03855at 4059.413 kb on - strand, within MPMX20_03855at 4059.485 kb on - strand, within MPMX20_03855at 4059.515 kb on - strand, within MPMX20_03855at 4059.525 kb on - strand, within MPMX20_03855at 4059.526 kb on + strand, within MPMX20_03855at 4059.526 kb on + strand, within MPMX20_03855at 4059.526 kb on + strand, within MPMX20_03855at 4059.526 kb on + strand, within MPMX20_03855at 4059.526 kb on + strand, within MPMX20_03855at 4059.526 kb on + strand, within MPMX20_03855at 4059.526 kb on + strand, within MPMX20_03855at 4059.526 kb on + strand, within MPMX20_03855at 4059.526 kb on + strand, within MPMX20_03855at 4059.526 kb on + strand, within MPMX20_03855at 4059.534 kb on - strand, within MPMX20_03855at 4059.534 kb on - strand, within MPMX20_03855at 4059.534 kb on - strand, within MPMX20_03855at 4059.534 kb on - strand, within MPMX20_03855at 4059.534 kb on - strand, within MPMX20_03855at 4059.534 kb on - strand, within MPMX20_03855at 4059.589 kb on + strand, within MPMX20_03855at 4059.624 kb on - strand, within MPMX20_03855at 4059.719 kb on + strand, within MPMX20_03855at 4059.727 kb on + strand, within MPMX20_03855at 4059.735 kb on - strand, within MPMX20_03855at 4059.735 kb on - strand, within MPMX20_03855at 4059.757 kb on - strand, within MPMX20_03855at 4059.784 kb on + strand, within MPMX20_03855at 4059.784 kb on + strand, within MPMX20_03855at 4059.784 kb on + strand, within MPMX20_03855at 4059.784 kb on + strand, within MPMX20_03855at 4059.792 kb on - strand, within MPMX20_03855at 4059.792 kb on - strand, within MPMX20_03855at 4059.879 kb on + strand, within MPMX20_03855at 4059.917 kb on + strand, within MPMX20_03855at 4059.923 kb on - strand, within MPMX20_03855at 4059.974 kb on + strand, within MPMX20_03855at 4059.974 kb on + strand, within MPMX20_03855at 4059.985 kb on + strand, within MPMX20_03855at 4059.985 kb on + strand, within MPMX20_03855at 4059.993 kb on - strand, within MPMX20_03855

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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4,057,120 + -2.9
4,057,162 - -3.4
4,057,218 + +0.5
4,057,218 + +1.0
4,057,218 + -1.0
4,057,225 - +1.9
4,057,226 - -3.0
4,057,226 - -0.9
4,057,259 + +0.4
4,057,316 + +2.0
4,057,342 + -3.9
4,057,350 - -0.2
4,057,350 - -2.7
4,057,359 - -1.0
4,057,370 + -2.9
4,057,383 + +1.9
4,057,391 - +0.1
4,057,391 - -3.2
4,057,391 - -0.4
4,057,391 - -0.7
4,057,443 + +1.2
4,057,457 - MPMX20_03853 0.11 +0.6
4,057,457 - MPMX20_03853 0.11 -2.4
4,057,462 + MPMX20_03853 0.11 -1.4
4,057,587 - MPMX20_03853 0.30 +1.1
4,057,608 + MPMX20_03853 0.33 +0.2
4,057,611 + MPMX20_03853 0.34 +0.3
4,057,611 - MPMX20_03853 0.34 -3.7
4,057,619 - MPMX20_03853 0.35 -0.7
4,057,800 + MPMX20_03853 0.63 -2.8
4,057,820 + MPMX20_03853 0.66 +2.5
4,057,872 + MPMX20_03853 0.73 -1.3
4,057,872 + MPMX20_03853 0.73 +1.5
4,057,877 + MPMX20_03853 0.74 +2.3
4,057,877 + MPMX20_03853 0.74 +2.4
4,057,880 - MPMX20_03853 0.75 +0.1
4,057,903 - MPMX20_03853 0.78 -0.0
4,057,911 + MPMX20_03853 0.79 +0.4
4,057,937 + MPMX20_03853 0.83 -2.8
4,057,948 + MPMX20_03853 0.85 -2.0
4,057,959 + MPMX20_03853 0.87 -0.4
4,057,994 - -2.0
4,058,072 - -3.6
4,058,078 + +0.9
4,058,090 + +2.6
4,058,110 + -2.6
4,058,126 + -0.8
4,058,228 - MPMX20_03854 0.15 +0.4
4,058,251 + MPMX20_03854 0.17 +0.7
4,058,259 - MPMX20_03854 0.18 +3.9
4,058,293 + MPMX20_03854 0.22 +0.9
4,058,298 + MPMX20_03854 0.23 +0.9
4,058,410 + MPMX20_03854 0.35 +0.6
4,058,437 + MPMX20_03854 0.38 +1.6
4,058,581 + MPMX20_03854 0.54 -1.8
4,058,591 + MPMX20_03854 0.55 -0.5
4,058,601 - MPMX20_03854 0.56 +1.9
4,058,607 - MPMX20_03854 0.57 -2.8
4,058,745 + MPMX20_03854 0.72 +0.9
4,058,793 - MPMX20_03854 0.78 +2.7
4,058,801 + MPMX20_03854 0.79 +0.6
4,058,892 - MPMX20_03854 0.89 -1.7
4,058,955 - -0.4
4,058,974 - -0.2
4,059,113 - +0.3
4,059,113 - +0.5
4,059,113 - +0.1
4,059,128 - +0.4
4,059,136 - +0.7
4,059,183 - -0.2
4,059,206 + +0.9
4,059,263 + -1.6
4,059,271 - -0.9
4,059,271 - -3.0
4,059,271 - +1.4
4,059,335 + MPMX20_03855 0.13 -2.2
4,059,335 + MPMX20_03855 0.13 +0.4
4,059,335 + MPMX20_03855 0.13 +2.0
4,059,343 - MPMX20_03855 0.13 -3.5
4,059,343 - MPMX20_03855 0.13 -3.2
4,059,343 - MPMX20_03855 0.13 -1.6
4,059,343 - MPMX20_03855 0.13 +0.4
4,059,355 + MPMX20_03855 0.14 +0.5
4,059,363 - MPMX20_03855 0.15 +1.0
4,059,385 + MPMX20_03855 0.17 -3.4
4,059,393 - MPMX20_03855 0.18 -1.0
4,059,413 - MPMX20_03855 0.19 -1.1
4,059,485 - MPMX20_03855 0.25 -2.2
4,059,515 - MPMX20_03855 0.28 +0.6
4,059,525 - MPMX20_03855 0.29 -0.0
4,059,526 + MPMX20_03855 0.29 -0.9
4,059,526 + MPMX20_03855 0.29 +4.4
4,059,526 + MPMX20_03855 0.29 +0.9
4,059,526 + MPMX20_03855 0.29 +1.0
4,059,526 + MPMX20_03855 0.29 +1.9
4,059,526 + MPMX20_03855 0.29 -1.3
4,059,526 + MPMX20_03855 0.29 -1.2
4,059,526 + MPMX20_03855 0.29 -3.1
4,059,526 + MPMX20_03855 0.29 -2.1
4,059,526 + MPMX20_03855 0.29 -2.2
4,059,534 - MPMX20_03855 0.30 -1.7
4,059,534 - MPMX20_03855 0.30 +2.1
4,059,534 - MPMX20_03855 0.30 -0.6
4,059,534 - MPMX20_03855 0.30 -3.6
4,059,534 - MPMX20_03855 0.30 +0.4
4,059,534 - MPMX20_03855 0.30 +0.1
4,059,589 + MPMX20_03855 0.34 +0.3
4,059,624 - MPMX20_03855 0.37 +0.2
4,059,719 + MPMX20_03855 0.46 -0.7
4,059,727 + MPMX20_03855 0.46 +1.2
4,059,735 - MPMX20_03855 0.47 +3.5
4,059,735 - MPMX20_03855 0.47 +0.5
4,059,757 - MPMX20_03855 0.49 +1.0
4,059,784 + MPMX20_03855 0.51 -1.2
4,059,784 + MPMX20_03855 0.51 -2.4
4,059,784 + MPMX20_03855 0.51 -2.8
4,059,784 + MPMX20_03855 0.51 -1.5
4,059,792 - MPMX20_03855 0.52 +2.3
4,059,792 - MPMX20_03855 0.52 +1.8
4,059,879 + MPMX20_03855 0.59 -2.8
4,059,917 + MPMX20_03855 0.63 -3.5
4,059,923 - MPMX20_03855 0.63 +1.0
4,059,974 + MPMX20_03855 0.67 +2.6
4,059,974 + MPMX20_03855 0.67 -2.2
4,059,985 + MPMX20_03855 0.68 -0.1
4,059,985 + MPMX20_03855 0.68 -1.9
4,059,993 - MPMX20_03855 0.69 +0.2

Or see this region's nucleotide sequence