Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03841 and MPMX20_03842 are separated by 213 nucleotides MPMX20_03842 and MPMX20_03843 are separated by 160 nucleotides MPMX20_03843 and MPMX20_03844 are separated by 80 nucleotides
MPMX20_03841: MPMX20_03841 - Bifunctional glutathionylspermidine synthetase/amidase, at 4,046,154 to 4,048,016
_03841
MPMX20_03842: MPMX20_03842 - Disulfide-bond oxidoreductase YghU, at 4,048,230 to 4,049,099
_03842
MPMX20_03843: MPMX20_03843 - hypothetical protein, at 4,049,260 to 4,049,592
_03843
MPMX20_03844: MPMX20_03844 - hypothetical protein, at 4,049,673 to 4,051,220
_03844
Position (kb)
4048
4049
4050 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5 at 4047.244 kb on + strand, within MPMX20_03841 at 4047.267 kb on + strand, within MPMX20_03841 at 4047.311 kb on - strand, within MPMX20_03841 at 4047.311 kb on - strand, within MPMX20_03841 at 4047.358 kb on + strand, within MPMX20_03841 at 4047.436 kb on - strand, within MPMX20_03841 at 4047.483 kb on + strand, within MPMX20_03841 at 4047.483 kb on + strand, within MPMX20_03841 at 4047.494 kb on + strand, within MPMX20_03841 at 4047.551 kb on + strand, within MPMX20_03841 at 4047.559 kb on - strand, within MPMX20_03841 at 4047.675 kb on + strand, within MPMX20_03841 at 4047.675 kb on + strand, within MPMX20_03841 at 4047.675 kb on + strand, within MPMX20_03841 at 4047.708 kb on + strand, within MPMX20_03841 at 4047.716 kb on - strand, within MPMX20_03841 at 4047.760 kb on + strand, within MPMX20_03841 at 4047.786 kb on - strand, within MPMX20_03841 at 4047.833 kb on + strand at 4047.833 kb on + strand at 4047.849 kb on + strand at 4047.857 kb on - strand at 4047.914 kb on + strand at 4047.914 kb on + strand at 4047.914 kb on + strand at 4047.914 kb on + strand at 4047.922 kb on - strand at 4047.959 kb on + strand at 4047.967 kb on - strand at 4047.976 kb on + strand at 4047.984 kb on - strand at 4047.994 kb on - strand at 4048.014 kb on + strand at 4048.038 kb on + strand at 4048.047 kb on + strand at 4048.151 kb on + strand at 4048.151 kb on - strand at 4048.177 kb on + strand at 4048.190 kb on + strand at 4048.196 kb on + strand at 4048.206 kb on - strand at 4048.223 kb on + strand at 4048.231 kb on - strand at 4048.257 kb on + strand at 4048.370 kb on + strand, within MPMX20_03842 at 4048.370 kb on + strand, within MPMX20_03842 at 4048.378 kb on - strand, within MPMX20_03842 at 4048.378 kb on - strand, within MPMX20_03842 at 4048.378 kb on - strand, within MPMX20_03842 at 4048.479 kb on + strand, within MPMX20_03842 at 4048.479 kb on + strand, within MPMX20_03842 at 4048.487 kb on - strand, within MPMX20_03842 at 4048.553 kb on + strand, within MPMX20_03842 at 4048.553 kb on + strand, within MPMX20_03842 at 4048.553 kb on + strand, within MPMX20_03842 at 4048.561 kb on - strand, within MPMX20_03842 at 4048.561 kb on - strand, within MPMX20_03842 at 4048.600 kb on - strand, within MPMX20_03842 at 4048.659 kb on + strand, within MPMX20_03842 at 4048.747 kb on - strand, within MPMX20_03842 at 4048.763 kb on - strand, within MPMX20_03842 at 4048.845 kb on - strand, within MPMX20_03842 at 4048.850 kb on - strand, within MPMX20_03842 at 4048.890 kb on + strand, within MPMX20_03842 at 4048.890 kb on + strand, within MPMX20_03842 at 4048.898 kb on - strand, within MPMX20_03842 at 4048.904 kb on + strand, within MPMX20_03842 at 4048.912 kb on - strand, within MPMX20_03842 at 4048.983 kb on + strand, within MPMX20_03842 at 4049.081 kb on + strand at 4049.325 kb on + strand, within MPMX20_03843 at 4049.454 kb on + strand, within MPMX20_03843 at 4049.454 kb on + strand, within MPMX20_03843 at 4049.462 kb on - strand, within MPMX20_03843 at 4049.462 kb on - strand, within MPMX20_03843 at 4049.462 kb on - strand, within MPMX20_03843 at 4049.480 kb on - strand, within MPMX20_03843 at 4049.486 kb on + strand, within MPMX20_03843 at 4049.486 kb on + strand, within MPMX20_03843 at 4049.521 kb on + strand, within MPMX20_03843 at 4049.529 kb on - strand, within MPMX20_03843 at 4049.560 kb on - strand at 4049.659 kb on + strand at 4049.754 kb on - strand at 4049.754 kb on - strand at 4049.754 kb on - strand at 4049.778 kb on - strand at 4049.840 kb on + strand, within MPMX20_03844 at 4049.840 kb on + strand, within MPMX20_03844 at 4049.848 kb on - strand, within MPMX20_03844 at 4049.945 kb on + strand, within MPMX20_03844 at 4050.001 kb on + strand, within MPMX20_03844 at 4050.088 kb on + strand, within MPMX20_03844
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 4,047,244 + MPMX20_03841 0.59 -1.7 4,047,267 + MPMX20_03841 0.60 -3.5 4,047,311 - MPMX20_03841 0.62 +0.5 4,047,311 - MPMX20_03841 0.62 +2.0 4,047,358 + MPMX20_03841 0.65 -3.2 4,047,436 - MPMX20_03841 0.69 +0.0 4,047,483 + MPMX20_03841 0.71 +0.3 4,047,483 + MPMX20_03841 0.71 -2.3 4,047,494 + MPMX20_03841 0.72 +1.0 4,047,551 + MPMX20_03841 0.75 +0.4 4,047,559 - MPMX20_03841 0.75 -0.1 4,047,675 + MPMX20_03841 0.82 +3.1 4,047,675 + MPMX20_03841 0.82 -2.5 4,047,675 + MPMX20_03841 0.82 +1.5 4,047,708 + MPMX20_03841 0.83 -2.5 4,047,716 - MPMX20_03841 0.84 -1.0 4,047,760 + MPMX20_03841 0.86 +1.8 4,047,786 - MPMX20_03841 0.88 -2.8 4,047,833 + -0.6 4,047,833 + +2.9 4,047,849 + -1.0 4,047,857 - -2.8 4,047,914 + +0.4 4,047,914 + +0.7 4,047,914 + -0.7 4,047,914 + -0.9 4,047,922 - -1.1 4,047,959 + -1.8 4,047,967 - +1.3 4,047,976 + -0.4 4,047,984 - -0.9 4,047,994 - -2.2 4,048,014 + +0.1 4,048,038 + +1.5 4,048,047 + -0.1 4,048,151 + -0.2 4,048,151 - +0.4 4,048,177 + -2.6 4,048,190 + +3.2 4,048,196 + +1.4 4,048,206 - -1.2 4,048,223 + -3.9 4,048,231 - +1.2 4,048,257 + +0.8 4,048,370 + MPMX20_03842 0.16 +1.3 4,048,370 + MPMX20_03842 0.16 -0.4 4,048,378 - MPMX20_03842 0.17 +1.3 4,048,378 - MPMX20_03842 0.17 +0.3 4,048,378 - MPMX20_03842 0.17 -1.4 4,048,479 + MPMX20_03842 0.29 -2.3 4,048,479 + MPMX20_03842 0.29 +2.6 4,048,487 - MPMX20_03842 0.30 -1.3 4,048,553 + MPMX20_03842 0.37 -2.3 4,048,553 + MPMX20_03842 0.37 +0.6 4,048,553 + MPMX20_03842 0.37 +4.9 4,048,561 - MPMX20_03842 0.38 +0.7 4,048,561 - MPMX20_03842 0.38 +2.2 4,048,600 - MPMX20_03842 0.43 -0.0 4,048,659 + MPMX20_03842 0.49 +2.0 4,048,747 - MPMX20_03842 0.59 -1.0 4,048,763 - MPMX20_03842 0.61 +2.2 4,048,845 - MPMX20_03842 0.71 +4.7 4,048,850 - MPMX20_03842 0.71 -2.1 4,048,890 + MPMX20_03842 0.76 -3.3 4,048,890 + MPMX20_03842 0.76 +1.0 4,048,898 - MPMX20_03842 0.77 -3.4 4,048,904 + MPMX20_03842 0.77 -2.7 4,048,912 - MPMX20_03842 0.78 +2.3 4,048,983 + MPMX20_03842 0.87 +2.4 4,049,081 + +0.6 4,049,325 + MPMX20_03843 0.20 +0.3 4,049,454 + MPMX20_03843 0.58 -2.7 4,049,454 + MPMX20_03843 0.58 +1.6 4,049,462 - MPMX20_03843 0.61 -2.2 4,049,462 - MPMX20_03843 0.61 -2.5 4,049,462 - MPMX20_03843 0.61 +1.9 4,049,480 - MPMX20_03843 0.66 +0.6 4,049,486 + MPMX20_03843 0.68 -0.6 4,049,486 + MPMX20_03843 0.68 -1.7 4,049,521 + MPMX20_03843 0.78 -0.4 4,049,529 - MPMX20_03843 0.81 -2.4 4,049,560 - +2.0 4,049,659 + +1.7 4,049,754 - -2.6 4,049,754 - -3.2 4,049,754 - -3.5 4,049,778 - +0.4 4,049,840 + MPMX20_03844 0.11 +1.6 4,049,840 + MPMX20_03844 0.11 +0.5 4,049,848 - MPMX20_03844 0.11 -0.0 4,049,945 + MPMX20_03844 0.18 +1.9 4,050,001 + MPMX20_03844 0.21 +0.8 4,050,088 + MPMX20_03844 0.27 +0.3
Or see this region's nucleotide sequence