Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03842

Experiment: octanoate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_03841 and MPMX20_03842 are separated by 213 nucleotidesMPMX20_03842 and MPMX20_03843 are separated by 160 nucleotidesMPMX20_03843 and MPMX20_03844 are separated by 80 nucleotides MPMX20_03841: MPMX20_03841 - Bifunctional glutathionylspermidine synthetase/amidase, at 4,046,154 to 4,048,016 _03841 MPMX20_03842: MPMX20_03842 - Disulfide-bond oxidoreductase YghU, at 4,048,230 to 4,049,099 _03842 MPMX20_03843: MPMX20_03843 - hypothetical protein, at 4,049,260 to 4,049,592 _03843 MPMX20_03844: MPMX20_03844 - hypothetical protein, at 4,049,673 to 4,051,220 _03844 Position (kb) 4048 4049 4050Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 4047.244 kb on + strand, within MPMX20_03841at 4047.267 kb on + strand, within MPMX20_03841at 4047.311 kb on - strand, within MPMX20_03841at 4047.311 kb on - strand, within MPMX20_03841at 4047.358 kb on + strand, within MPMX20_03841at 4047.436 kb on - strand, within MPMX20_03841at 4047.483 kb on + strand, within MPMX20_03841at 4047.483 kb on + strand, within MPMX20_03841at 4047.494 kb on + strand, within MPMX20_03841at 4047.551 kb on + strand, within MPMX20_03841at 4047.559 kb on - strand, within MPMX20_03841at 4047.675 kb on + strand, within MPMX20_03841at 4047.675 kb on + strand, within MPMX20_03841at 4047.675 kb on + strand, within MPMX20_03841at 4047.708 kb on + strand, within MPMX20_03841at 4047.716 kb on - strand, within MPMX20_03841at 4047.760 kb on + strand, within MPMX20_03841at 4047.786 kb on - strand, within MPMX20_03841at 4047.833 kb on + strandat 4047.833 kb on + strandat 4047.849 kb on + strandat 4047.857 kb on - strandat 4047.914 kb on + strandat 4047.914 kb on + strandat 4047.914 kb on + strandat 4047.914 kb on + strandat 4047.922 kb on - strandat 4047.959 kb on + strandat 4047.967 kb on - strandat 4047.976 kb on + strandat 4047.984 kb on - strandat 4047.994 kb on - strandat 4048.014 kb on + strandat 4048.038 kb on + strandat 4048.047 kb on + strandat 4048.151 kb on + strandat 4048.151 kb on - strandat 4048.177 kb on + strandat 4048.190 kb on + strandat 4048.196 kb on + strandat 4048.206 kb on - strandat 4048.223 kb on + strandat 4048.231 kb on - strandat 4048.257 kb on + strandat 4048.370 kb on + strand, within MPMX20_03842at 4048.370 kb on + strand, within MPMX20_03842at 4048.378 kb on - strand, within MPMX20_03842at 4048.378 kb on - strand, within MPMX20_03842at 4048.378 kb on - strand, within MPMX20_03842at 4048.479 kb on + strand, within MPMX20_03842at 4048.479 kb on + strand, within MPMX20_03842at 4048.487 kb on - strand, within MPMX20_03842at 4048.553 kb on + strand, within MPMX20_03842at 4048.553 kb on + strand, within MPMX20_03842at 4048.553 kb on + strand, within MPMX20_03842at 4048.561 kb on - strand, within MPMX20_03842at 4048.561 kb on - strand, within MPMX20_03842at 4048.600 kb on - strand, within MPMX20_03842at 4048.659 kb on + strand, within MPMX20_03842at 4048.747 kb on - strand, within MPMX20_03842at 4048.763 kb on - strand, within MPMX20_03842at 4048.845 kb on - strand, within MPMX20_03842at 4048.850 kb on - strand, within MPMX20_03842at 4048.890 kb on + strand, within MPMX20_03842at 4048.890 kb on + strand, within MPMX20_03842at 4048.898 kb on - strand, within MPMX20_03842at 4048.904 kb on + strand, within MPMX20_03842at 4048.912 kb on - strand, within MPMX20_03842at 4048.983 kb on + strand, within MPMX20_03842at 4049.081 kb on + strandat 4049.325 kb on + strand, within MPMX20_03843at 4049.454 kb on + strand, within MPMX20_03843at 4049.454 kb on + strand, within MPMX20_03843at 4049.462 kb on - strand, within MPMX20_03843at 4049.462 kb on - strand, within MPMX20_03843at 4049.462 kb on - strand, within MPMX20_03843at 4049.480 kb on - strand, within MPMX20_03843at 4049.486 kb on + strand, within MPMX20_03843at 4049.486 kb on + strand, within MPMX20_03843at 4049.521 kb on + strand, within MPMX20_03843at 4049.529 kb on - strand, within MPMX20_03843at 4049.560 kb on - strandat 4049.659 kb on + strandat 4049.754 kb on - strandat 4049.754 kb on - strandat 4049.754 kb on - strandat 4049.778 kb on - strandat 4049.840 kb on + strand, within MPMX20_03844at 4049.840 kb on + strand, within MPMX20_03844at 4049.848 kb on - strand, within MPMX20_03844at 4049.945 kb on + strand, within MPMX20_03844at 4050.001 kb on + strand, within MPMX20_03844at 4050.088 kb on + strand, within MPMX20_03844

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
remove
4,047,244 + MPMX20_03841 0.59 -1.7
4,047,267 + MPMX20_03841 0.60 -3.5
4,047,311 - MPMX20_03841 0.62 +0.5
4,047,311 - MPMX20_03841 0.62 +2.0
4,047,358 + MPMX20_03841 0.65 -3.2
4,047,436 - MPMX20_03841 0.69 +0.0
4,047,483 + MPMX20_03841 0.71 +0.3
4,047,483 + MPMX20_03841 0.71 -2.3
4,047,494 + MPMX20_03841 0.72 +1.0
4,047,551 + MPMX20_03841 0.75 +0.4
4,047,559 - MPMX20_03841 0.75 -0.1
4,047,675 + MPMX20_03841 0.82 +3.1
4,047,675 + MPMX20_03841 0.82 -2.5
4,047,675 + MPMX20_03841 0.82 +1.5
4,047,708 + MPMX20_03841 0.83 -2.5
4,047,716 - MPMX20_03841 0.84 -1.0
4,047,760 + MPMX20_03841 0.86 +1.8
4,047,786 - MPMX20_03841 0.88 -2.8
4,047,833 + -0.6
4,047,833 + +2.9
4,047,849 + -1.0
4,047,857 - -2.8
4,047,914 + +0.4
4,047,914 + +0.7
4,047,914 + -0.7
4,047,914 + -0.9
4,047,922 - -1.1
4,047,959 + -1.8
4,047,967 - +1.3
4,047,976 + -0.4
4,047,984 - -0.9
4,047,994 - -2.2
4,048,014 + +0.1
4,048,038 + +1.5
4,048,047 + -0.1
4,048,151 + -0.2
4,048,151 - +0.4
4,048,177 + -2.6
4,048,190 + +3.2
4,048,196 + +1.4
4,048,206 - -1.2
4,048,223 + -3.9
4,048,231 - +1.2
4,048,257 + +0.8
4,048,370 + MPMX20_03842 0.16 +1.3
4,048,370 + MPMX20_03842 0.16 -0.4
4,048,378 - MPMX20_03842 0.17 +1.3
4,048,378 - MPMX20_03842 0.17 +0.3
4,048,378 - MPMX20_03842 0.17 -1.4
4,048,479 + MPMX20_03842 0.29 -2.3
4,048,479 + MPMX20_03842 0.29 +2.6
4,048,487 - MPMX20_03842 0.30 -1.3
4,048,553 + MPMX20_03842 0.37 -2.3
4,048,553 + MPMX20_03842 0.37 +0.6
4,048,553 + MPMX20_03842 0.37 +4.9
4,048,561 - MPMX20_03842 0.38 +0.7
4,048,561 - MPMX20_03842 0.38 +2.2
4,048,600 - MPMX20_03842 0.43 -0.0
4,048,659 + MPMX20_03842 0.49 +2.0
4,048,747 - MPMX20_03842 0.59 -1.0
4,048,763 - MPMX20_03842 0.61 +2.2
4,048,845 - MPMX20_03842 0.71 +4.7
4,048,850 - MPMX20_03842 0.71 -2.1
4,048,890 + MPMX20_03842 0.76 -3.3
4,048,890 + MPMX20_03842 0.76 +1.0
4,048,898 - MPMX20_03842 0.77 -3.4
4,048,904 + MPMX20_03842 0.77 -2.7
4,048,912 - MPMX20_03842 0.78 +2.3
4,048,983 + MPMX20_03842 0.87 +2.4
4,049,081 + +0.6
4,049,325 + MPMX20_03843 0.20 +0.3
4,049,454 + MPMX20_03843 0.58 -2.7
4,049,454 + MPMX20_03843 0.58 +1.6
4,049,462 - MPMX20_03843 0.61 -2.2
4,049,462 - MPMX20_03843 0.61 -2.5
4,049,462 - MPMX20_03843 0.61 +1.9
4,049,480 - MPMX20_03843 0.66 +0.6
4,049,486 + MPMX20_03843 0.68 -0.6
4,049,486 + MPMX20_03843 0.68 -1.7
4,049,521 + MPMX20_03843 0.78 -0.4
4,049,529 - MPMX20_03843 0.81 -2.4
4,049,560 - +2.0
4,049,659 + +1.7
4,049,754 - -2.6
4,049,754 - -3.2
4,049,754 - -3.5
4,049,778 - +0.4
4,049,840 + MPMX20_03844 0.11 +1.6
4,049,840 + MPMX20_03844 0.11 +0.5
4,049,848 - MPMX20_03844 0.11 -0.0
4,049,945 + MPMX20_03844 0.18 +1.9
4,050,001 + MPMX20_03844 0.21 +0.8
4,050,088 + MPMX20_03844 0.27 +0.3

Or see this region's nucleotide sequence