Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03826

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03824 and MPMX20_03825 are separated by 10 nucleotidesMPMX20_03825 and MPMX20_03826 overlap by 4 nucleotidesMPMX20_03826 and MPMX20_03827 are separated by 16 nucleotides MPMX20_03824: MPMX20_03824 - Citrate lyase alpha chain, at 4,025,598 to 4,027,115 _03824 MPMX20_03825: MPMX20_03825 - Citrate lyase subunit beta, at 4,027,126 to 4,028,001 _03825 MPMX20_03826: MPMX20_03826 - Citrate lyase acyl carrier protein, at 4,027,998 to 4,028,291 _03826 MPMX20_03827: MPMX20_03827 - [Citrate [pro-3S]-lyase] ligase, at 4,028,308 to 4,029,333 _03827 Position (kb) 4027 4028 4029Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 4027.003 kb on - strandat 4027.021 kb on - strandat 4027.034 kb on + strandat 4027.047 kb on - strandat 4027.061 kb on + strandat 4027.061 kb on + strandat 4027.086 kb on + strandat 4027.103 kb on - strandat 4027.117 kb on + strandat 4027.139 kb on + strandat 4027.177 kb on + strandat 4027.230 kb on - strand, within MPMX20_03825at 4027.296 kb on + strand, within MPMX20_03825at 4027.317 kb on + strand, within MPMX20_03825at 4027.321 kb on + strand, within MPMX20_03825at 4027.329 kb on - strand, within MPMX20_03825at 4027.488 kb on + strand, within MPMX20_03825at 4027.496 kb on - strand, within MPMX20_03825at 4027.543 kb on - strand, within MPMX20_03825at 4027.589 kb on + strand, within MPMX20_03825at 4027.597 kb on - strand, within MPMX20_03825at 4027.597 kb on - strand, within MPMX20_03825at 4027.597 kb on - strand, within MPMX20_03825at 4027.597 kb on - strand, within MPMX20_03825at 4027.607 kb on - strand, within MPMX20_03825at 4027.607 kb on - strand, within MPMX20_03825at 4027.680 kb on - strand, within MPMX20_03825at 4027.701 kb on + strand, within MPMX20_03825at 4027.701 kb on + strand, within MPMX20_03825at 4027.701 kb on + strand, within MPMX20_03825at 4027.701 kb on + strand, within MPMX20_03825at 4027.701 kb on + strand, within MPMX20_03825at 4027.709 kb on - strand, within MPMX20_03825at 4027.734 kb on + strand, within MPMX20_03825at 4027.758 kb on + strand, within MPMX20_03825at 4027.801 kb on - strand, within MPMX20_03825at 4027.892 kb on - strand, within MPMX20_03825at 4027.918 kb on + strandat 4027.977 kb on + strandat 4028.009 kb on + strandat 4028.009 kb on + strandat 4028.045 kb on + strand, within MPMX20_03826at 4028.074 kb on + strand, within MPMX20_03826at 4028.079 kb on + strand, within MPMX20_03826at 4028.087 kb on - strand, within MPMX20_03826at 4028.087 kb on - strand, within MPMX20_03826at 4028.156 kb on + strand, within MPMX20_03826at 4028.223 kb on - strand, within MPMX20_03826at 4028.255 kb on + strand, within MPMX20_03826at 4028.339 kb on + strandat 4028.356 kb on + strandat 4028.364 kb on - strandat 4028.399 kb on + strandat 4028.402 kb on - strandat 4028.407 kb on - strandat 4028.502 kb on + strand, within MPMX20_03827at 4028.510 kb on - strand, within MPMX20_03827at 4028.512 kb on - strand, within MPMX20_03827at 4028.561 kb on + strand, within MPMX20_03827at 4028.569 kb on - strand, within MPMX20_03827at 4028.574 kb on - strand, within MPMX20_03827at 4028.582 kb on + strand, within MPMX20_03827at 4028.623 kb on - strand, within MPMX20_03827at 4028.633 kb on - strand, within MPMX20_03827at 4028.731 kb on + strand, within MPMX20_03827at 4028.734 kb on - strand, within MPMX20_03827at 4028.802 kb on + strand, within MPMX20_03827at 4028.810 kb on - strand, within MPMX20_03827at 4028.969 kb on - strand, within MPMX20_03827at 4029.006 kb on + strand, within MPMX20_03827at 4029.064 kb on + strand, within MPMX20_03827at 4029.077 kb on + strand, within MPMX20_03827at 4029.097 kb on - strand, within MPMX20_03827at 4029.101 kb on + strand, within MPMX20_03827at 4029.109 kb on - strand, within MPMX20_03827at 4029.176 kb on - strand, within MPMX20_03827at 4029.203 kb on + strand, within MPMX20_03827at 4029.211 kb on - strand, within MPMX20_03827at 4029.226 kb on + strand, within MPMX20_03827at 4029.231 kb on + strandat 4029.239 kb on - strandat 4029.239 kb on - strandat 4029.275 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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4,027,003 - +1.2
4,027,021 - -2.1
4,027,034 + -2.0
4,027,047 - -1.4
4,027,061 + -0.7
4,027,061 + +3.3
4,027,086 + -3.2
4,027,103 - -1.5
4,027,117 + +0.8
4,027,139 + -1.0
4,027,177 + -0.6
4,027,230 - MPMX20_03825 0.12 -1.8
4,027,296 + MPMX20_03825 0.19 -4.0
4,027,317 + MPMX20_03825 0.22 -1.0
4,027,321 + MPMX20_03825 0.22 +0.3
4,027,329 - MPMX20_03825 0.23 -3.1
4,027,488 + MPMX20_03825 0.41 -1.9
4,027,496 - MPMX20_03825 0.42 -0.0
4,027,543 - MPMX20_03825 0.48 -2.2
4,027,589 + MPMX20_03825 0.53 -1.0
4,027,597 - MPMX20_03825 0.54 -2.9
4,027,597 - MPMX20_03825 0.54 -1.1
4,027,597 - MPMX20_03825 0.54 +1.1
4,027,597 - MPMX20_03825 0.54 +1.8
4,027,607 - MPMX20_03825 0.55 -0.7
4,027,607 - MPMX20_03825 0.55 +0.3
4,027,680 - MPMX20_03825 0.63 +1.2
4,027,701 + MPMX20_03825 0.66 -0.2
4,027,701 + MPMX20_03825 0.66 -3.5
4,027,701 + MPMX20_03825 0.66 +0.9
4,027,701 + MPMX20_03825 0.66 +1.1
4,027,701 + MPMX20_03825 0.66 +1.7
4,027,709 - MPMX20_03825 0.67 -3.0
4,027,734 + MPMX20_03825 0.69 -2.2
4,027,758 + MPMX20_03825 0.72 +1.7
4,027,801 - MPMX20_03825 0.77 -1.0
4,027,892 - MPMX20_03825 0.87 -4.0
4,027,918 + +2.9
4,027,977 + +1.2
4,028,009 + +1.4
4,028,009 + -0.0
4,028,045 + MPMX20_03826 0.16 +0.8
4,028,074 + MPMX20_03826 0.26 +4.7
4,028,079 + MPMX20_03826 0.28 +1.2
4,028,087 - MPMX20_03826 0.30 -3.1
4,028,087 - MPMX20_03826 0.30 -0.1
4,028,156 + MPMX20_03826 0.54 +1.5
4,028,223 - MPMX20_03826 0.77 +2.9
4,028,255 + MPMX20_03826 0.87 -0.5
4,028,339 + +0.3
4,028,356 + -2.1
4,028,364 - +0.1
4,028,399 + -1.2
4,028,402 - +1.2
4,028,407 - +0.1
4,028,502 + MPMX20_03827 0.19 -3.3
4,028,510 - MPMX20_03827 0.20 -2.4
4,028,512 - MPMX20_03827 0.20 +0.3
4,028,561 + MPMX20_03827 0.25 +0.6
4,028,569 - MPMX20_03827 0.25 +4.4
4,028,574 - MPMX20_03827 0.26 +0.8
4,028,582 + MPMX20_03827 0.27 -1.2
4,028,623 - MPMX20_03827 0.31 +2.5
4,028,633 - MPMX20_03827 0.32 -0.7
4,028,731 + MPMX20_03827 0.41 -0.4
4,028,734 - MPMX20_03827 0.42 -0.2
4,028,802 + MPMX20_03827 0.48 -1.8
4,028,810 - MPMX20_03827 0.49 -3.0
4,028,969 - MPMX20_03827 0.64 +1.7
4,029,006 + MPMX20_03827 0.68 -0.4
4,029,064 + MPMX20_03827 0.74 +1.9
4,029,077 + MPMX20_03827 0.75 -2.7
4,029,097 - MPMX20_03827 0.77 +2.1
4,029,101 + MPMX20_03827 0.77 -0.7
4,029,109 - MPMX20_03827 0.78 -2.0
4,029,176 - MPMX20_03827 0.85 +1.2
4,029,203 + MPMX20_03827 0.87 +1.8
4,029,211 - MPMX20_03827 0.88 +0.1
4,029,226 + MPMX20_03827 0.89 -0.3
4,029,231 + -2.4
4,029,239 - -3.2
4,029,239 - -2.2
4,029,275 - +0.4

Or see this region's nucleotide sequence