Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03824 and MPMX20_03825 are separated by 10 nucleotides MPMX20_03825 and MPMX20_03826 overlap by 4 nucleotides MPMX20_03826 and MPMX20_03827 are separated by 16 nucleotides
MPMX20_03824: MPMX20_03824 - Citrate lyase alpha chain, at 4,025,598 to 4,027,115
_03824
MPMX20_03825: MPMX20_03825 - Citrate lyase subunit beta, at 4,027,126 to 4,028,001
_03825
MPMX20_03826: MPMX20_03826 - Citrate lyase acyl carrier protein, at 4,027,998 to 4,028,291
_03826
MPMX20_03827: MPMX20_03827 - [Citrate [pro-3S]-lyase] ligase, at 4,028,308 to 4,029,333
_03827
Position (kb)
4027
4028
4029 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 4027.003 kb on - strand at 4027.021 kb on - strand at 4027.034 kb on + strand at 4027.047 kb on - strand at 4027.061 kb on + strand at 4027.061 kb on + strand at 4027.086 kb on + strand at 4027.103 kb on - strand at 4027.117 kb on + strand at 4027.139 kb on + strand at 4027.177 kb on + strand at 4027.230 kb on - strand, within MPMX20_03825 at 4027.296 kb on + strand, within MPMX20_03825 at 4027.317 kb on + strand, within MPMX20_03825 at 4027.321 kb on + strand, within MPMX20_03825 at 4027.329 kb on - strand, within MPMX20_03825 at 4027.488 kb on + strand, within MPMX20_03825 at 4027.496 kb on - strand, within MPMX20_03825 at 4027.543 kb on - strand, within MPMX20_03825 at 4027.589 kb on + strand, within MPMX20_03825 at 4027.597 kb on - strand, within MPMX20_03825 at 4027.597 kb on - strand, within MPMX20_03825 at 4027.597 kb on - strand, within MPMX20_03825 at 4027.597 kb on - strand, within MPMX20_03825 at 4027.607 kb on - strand, within MPMX20_03825 at 4027.607 kb on - strand, within MPMX20_03825 at 4027.680 kb on - strand, within MPMX20_03825 at 4027.701 kb on + strand, within MPMX20_03825 at 4027.701 kb on + strand, within MPMX20_03825 at 4027.701 kb on + strand, within MPMX20_03825 at 4027.701 kb on + strand, within MPMX20_03825 at 4027.701 kb on + strand, within MPMX20_03825 at 4027.709 kb on - strand, within MPMX20_03825 at 4027.734 kb on + strand, within MPMX20_03825 at 4027.758 kb on + strand, within MPMX20_03825 at 4027.801 kb on - strand, within MPMX20_03825 at 4027.892 kb on - strand, within MPMX20_03825 at 4027.918 kb on + strand at 4027.977 kb on + strand at 4028.009 kb on + strand at 4028.009 kb on + strand at 4028.045 kb on + strand, within MPMX20_03826 at 4028.074 kb on + strand, within MPMX20_03826 at 4028.079 kb on + strand, within MPMX20_03826 at 4028.087 kb on - strand, within MPMX20_03826 at 4028.087 kb on - strand, within MPMX20_03826 at 4028.156 kb on + strand, within MPMX20_03826 at 4028.223 kb on - strand, within MPMX20_03826 at 4028.255 kb on + strand, within MPMX20_03826 at 4028.339 kb on + strand at 4028.356 kb on + strand at 4028.364 kb on - strand at 4028.399 kb on + strand at 4028.402 kb on - strand at 4028.407 kb on - strand at 4028.502 kb on + strand, within MPMX20_03827 at 4028.510 kb on - strand, within MPMX20_03827 at 4028.512 kb on - strand, within MPMX20_03827 at 4028.561 kb on + strand, within MPMX20_03827 at 4028.569 kb on - strand, within MPMX20_03827 at 4028.574 kb on - strand, within MPMX20_03827 at 4028.582 kb on + strand, within MPMX20_03827 at 4028.623 kb on - strand, within MPMX20_03827 at 4028.633 kb on - strand, within MPMX20_03827 at 4028.731 kb on + strand, within MPMX20_03827 at 4028.734 kb on - strand, within MPMX20_03827 at 4028.802 kb on + strand, within MPMX20_03827 at 4028.810 kb on - strand, within MPMX20_03827 at 4028.969 kb on - strand, within MPMX20_03827 at 4029.006 kb on + strand, within MPMX20_03827 at 4029.064 kb on + strand, within MPMX20_03827 at 4029.077 kb on + strand, within MPMX20_03827 at 4029.097 kb on - strand, within MPMX20_03827 at 4029.101 kb on + strand, within MPMX20_03827 at 4029.109 kb on - strand, within MPMX20_03827 at 4029.176 kb on - strand, within MPMX20_03827 at 4029.203 kb on + strand, within MPMX20_03827 at 4029.211 kb on - strand, within MPMX20_03827 at 4029.226 kb on + strand, within MPMX20_03827 at 4029.231 kb on + strand at 4029.239 kb on - strand at 4029.239 kb on - strand at 4029.275 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 4,027,003 - +1.2 4,027,021 - -2.1 4,027,034 + -2.0 4,027,047 - -1.4 4,027,061 + -0.7 4,027,061 + +3.3 4,027,086 + -3.2 4,027,103 - -1.5 4,027,117 + +0.8 4,027,139 + -1.0 4,027,177 + -0.6 4,027,230 - MPMX20_03825 0.12 -1.8 4,027,296 + MPMX20_03825 0.19 -4.0 4,027,317 + MPMX20_03825 0.22 -1.0 4,027,321 + MPMX20_03825 0.22 +0.3 4,027,329 - MPMX20_03825 0.23 -3.1 4,027,488 + MPMX20_03825 0.41 -1.9 4,027,496 - MPMX20_03825 0.42 -0.0 4,027,543 - MPMX20_03825 0.48 -2.2 4,027,589 + MPMX20_03825 0.53 -1.0 4,027,597 - MPMX20_03825 0.54 -2.9 4,027,597 - MPMX20_03825 0.54 -1.1 4,027,597 - MPMX20_03825 0.54 +1.1 4,027,597 - MPMX20_03825 0.54 +1.8 4,027,607 - MPMX20_03825 0.55 -0.7 4,027,607 - MPMX20_03825 0.55 +0.3 4,027,680 - MPMX20_03825 0.63 +1.2 4,027,701 + MPMX20_03825 0.66 -0.2 4,027,701 + MPMX20_03825 0.66 -3.5 4,027,701 + MPMX20_03825 0.66 +0.9 4,027,701 + MPMX20_03825 0.66 +1.1 4,027,701 + MPMX20_03825 0.66 +1.7 4,027,709 - MPMX20_03825 0.67 -3.0 4,027,734 + MPMX20_03825 0.69 -2.2 4,027,758 + MPMX20_03825 0.72 +1.7 4,027,801 - MPMX20_03825 0.77 -1.0 4,027,892 - MPMX20_03825 0.87 -4.0 4,027,918 + +2.9 4,027,977 + +1.2 4,028,009 + +1.4 4,028,009 + -0.0 4,028,045 + MPMX20_03826 0.16 +0.8 4,028,074 + MPMX20_03826 0.26 +4.7 4,028,079 + MPMX20_03826 0.28 +1.2 4,028,087 - MPMX20_03826 0.30 -3.1 4,028,087 - MPMX20_03826 0.30 -0.1 4,028,156 + MPMX20_03826 0.54 +1.5 4,028,223 - MPMX20_03826 0.77 +2.9 4,028,255 + MPMX20_03826 0.87 -0.5 4,028,339 + +0.3 4,028,356 + -2.1 4,028,364 - +0.1 4,028,399 + -1.2 4,028,402 - +1.2 4,028,407 - +0.1 4,028,502 + MPMX20_03827 0.19 -3.3 4,028,510 - MPMX20_03827 0.20 -2.4 4,028,512 - MPMX20_03827 0.20 +0.3 4,028,561 + MPMX20_03827 0.25 +0.6 4,028,569 - MPMX20_03827 0.25 +4.4 4,028,574 - MPMX20_03827 0.26 +0.8 4,028,582 + MPMX20_03827 0.27 -1.2 4,028,623 - MPMX20_03827 0.31 +2.5 4,028,633 - MPMX20_03827 0.32 -0.7 4,028,731 + MPMX20_03827 0.41 -0.4 4,028,734 - MPMX20_03827 0.42 -0.2 4,028,802 + MPMX20_03827 0.48 -1.8 4,028,810 - MPMX20_03827 0.49 -3.0 4,028,969 - MPMX20_03827 0.64 +1.7 4,029,006 + MPMX20_03827 0.68 -0.4 4,029,064 + MPMX20_03827 0.74 +1.9 4,029,077 + MPMX20_03827 0.75 -2.7 4,029,097 - MPMX20_03827 0.77 +2.1 4,029,101 + MPMX20_03827 0.77 -0.7 4,029,109 - MPMX20_03827 0.78 -2.0 4,029,176 - MPMX20_03827 0.85 +1.2 4,029,203 + MPMX20_03827 0.87 +1.8 4,029,211 - MPMX20_03827 0.88 +0.1 4,029,226 + MPMX20_03827 0.89 -0.3 4,029,231 + -2.4 4,029,239 - -3.2 4,029,239 - -2.2 4,029,275 - +0.4
Or see this region's nucleotide sequence