Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03754

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03753 and MPMX20_03754 are separated by 101 nucleotidesMPMX20_03754 and MPMX20_03755 are separated by 6 nucleotidesMPMX20_03755 and MPMX20_03756 overlap by 20 nucleotidesMPMX20_03756 and MPMX20_03757 are separated by 294 nucleotides MPMX20_03753: MPMX20_03753 - Tyrosine recombinase XerD, at 3,955,630 to 3,956,526 _03753 MPMX20_03754: MPMX20_03754 - Flavodoxin 2, at 3,956,628 to 3,957,149 _03754 MPMX20_03755: MPMX20_03755 - Inner membrane protein YgfX, at 3,957,156 to 3,957,566 _03755 MPMX20_03756: MPMX20_03756 - FAD assembly factor SdhE, at 3,957,547 to 3,957,813 _03756 MPMX20_03757: MPMX20_03757 - tRNA-modifying protein YgfZ, at 3,958,108 to 3,959,088 _03757 Position (kb) 3956 3957 3958Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 3955.645 kb on - strandat 3955.645 kb on - strandat 3955.737 kb on - strand, within MPMX20_03753at 3955.830 kb on + strand, within MPMX20_03753at 3955.919 kb on + strand, within MPMX20_03753at 3955.942 kb on + strand, within MPMX20_03753at 3955.982 kb on - strand, within MPMX20_03753at 3955.984 kb on - strand, within MPMX20_03753at 3955.989 kb on + strand, within MPMX20_03753at 3956.034 kb on - strand, within MPMX20_03753at 3956.043 kb on + strand, within MPMX20_03753at 3956.043 kb on + strand, within MPMX20_03753at 3956.043 kb on + strand, within MPMX20_03753at 3956.051 kb on - strand, within MPMX20_03753at 3956.081 kb on - strand, within MPMX20_03753at 3956.096 kb on + strand, within MPMX20_03753at 3956.118 kb on - strand, within MPMX20_03753at 3956.185 kb on + strand, within MPMX20_03753at 3956.224 kb on + strand, within MPMX20_03753at 3956.224 kb on + strand, within MPMX20_03753at 3956.224 kb on + strand, within MPMX20_03753at 3956.224 kb on + strand, within MPMX20_03753at 3956.224 kb on + strand, within MPMX20_03753at 3956.232 kb on - strand, within MPMX20_03753at 3956.232 kb on - strand, within MPMX20_03753at 3956.264 kb on + strand, within MPMX20_03753at 3956.297 kb on - strand, within MPMX20_03753at 3956.307 kb on - strand, within MPMX20_03753at 3956.329 kb on + strand, within MPMX20_03753at 3956.333 kb on + strand, within MPMX20_03753at 3956.355 kb on - strand, within MPMX20_03753at 3956.424 kb on + strand, within MPMX20_03753at 3956.439 kb on + strandat 3956.444 kb on + strandat 3956.486 kb on - strandat 3956.518 kb on + strandat 3956.578 kb on + strandat 3956.580 kb on + strandat 3956.588 kb on - strandat 3956.614 kb on - strandat 3956.632 kb on + strandat 3956.637 kb on + strandat 3956.640 kb on - strandat 3956.642 kb on + strandat 3956.642 kb on + strandat 3956.642 kb on + strandat 3956.642 kb on + strandat 3956.650 kb on - strandat 3956.650 kb on - strandat 3956.650 kb on - strandat 3956.650 kb on - strandat 3956.650 kb on - strandat 3956.668 kb on - strandat 3956.704 kb on + strand, within MPMX20_03754at 3956.712 kb on - strand, within MPMX20_03754at 3956.729 kb on + strand, within MPMX20_03754at 3956.743 kb on + strand, within MPMX20_03754at 3956.777 kb on - strand, within MPMX20_03754at 3956.830 kb on + strand, within MPMX20_03754at 3956.834 kb on - strand, within MPMX20_03754at 3956.900 kb on + strand, within MPMX20_03754at 3956.900 kb on + strand, within MPMX20_03754at 3956.900 kb on + strand, within MPMX20_03754at 3956.900 kb on + strand, within MPMX20_03754at 3956.970 kb on - strand, within MPMX20_03754at 3956.988 kb on + strand, within MPMX20_03754at 3957.059 kb on + strand, within MPMX20_03754at 3957.062 kb on - strand, within MPMX20_03754at 3957.130 kb on + strandat 3957.208 kb on + strand, within MPMX20_03755at 3957.211 kb on - strand, within MPMX20_03755at 3957.212 kb on + strand, within MPMX20_03755at 3957.214 kb on + strand, within MPMX20_03755at 3957.216 kb on - strand, within MPMX20_03755at 3957.216 kb on - strand, within MPMX20_03755at 3957.230 kb on - strand, within MPMX20_03755at 3957.230 kb on - strand, within MPMX20_03755at 3957.237 kb on - strand, within MPMX20_03755at 3957.306 kb on - strand, within MPMX20_03755at 3957.411 kb on + strand, within MPMX20_03755at 3957.427 kb on - strand, within MPMX20_03755at 3957.459 kb on - strand, within MPMX20_03755at 3957.472 kb on - strand, within MPMX20_03755at 3957.476 kb on + strand, within MPMX20_03755at 3957.480 kb on + strand, within MPMX20_03755at 3957.494 kb on - strand, within MPMX20_03755at 3957.514 kb on + strand, within MPMX20_03755at 3957.553 kb on - strandat 3957.631 kb on - strand, within MPMX20_03756at 3957.668 kb on + strand, within MPMX20_03756at 3957.668 kb on + strand, within MPMX20_03756at 3957.668 kb on + strand, within MPMX20_03756at 3957.668 kb on + strand, within MPMX20_03756at 3957.676 kb on - strand, within MPMX20_03756at 3957.686 kb on + strand, within MPMX20_03756at 3957.702 kb on - strand, within MPMX20_03756at 3957.715 kb on + strand, within MPMX20_03756at 3957.723 kb on - strand, within MPMX20_03756at 3957.843 kb on + strandat 3957.900 kb on - strandat 3957.900 kb on - strandat 3957.935 kb on + strandat 3957.935 kb on + strandat 3957.974 kb on + strandat 3957.984 kb on + strandat 3958.038 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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3,955,645 - -0.7
3,955,645 - +3.2
3,955,737 - MPMX20_03753 0.12 -0.9
3,955,830 + MPMX20_03753 0.22 -0.9
3,955,919 + MPMX20_03753 0.32 -0.6
3,955,942 + MPMX20_03753 0.35 -1.6
3,955,982 - MPMX20_03753 0.39 -1.7
3,955,984 - MPMX20_03753 0.39 +3.8
3,955,989 + MPMX20_03753 0.40 -0.5
3,956,034 - MPMX20_03753 0.45 +3.9
3,956,043 + MPMX20_03753 0.46 -1.5
3,956,043 + MPMX20_03753 0.46 +0.5
3,956,043 + MPMX20_03753 0.46 -0.1
3,956,051 - MPMX20_03753 0.47 +0.5
3,956,081 - MPMX20_03753 0.50 -0.8
3,956,096 + MPMX20_03753 0.52 -2.1
3,956,118 - MPMX20_03753 0.54 -2.7
3,956,185 + MPMX20_03753 0.62 -0.6
3,956,224 + MPMX20_03753 0.66 +0.1
3,956,224 + MPMX20_03753 0.66 -2.3
3,956,224 + MPMX20_03753 0.66 -1.5
3,956,224 + MPMX20_03753 0.66 -1.4
3,956,224 + MPMX20_03753 0.66 +1.9
3,956,232 - MPMX20_03753 0.67 +0.1
3,956,232 - MPMX20_03753 0.67 -0.5
3,956,264 + MPMX20_03753 0.71 -0.3
3,956,297 - MPMX20_03753 0.74 -0.8
3,956,307 - MPMX20_03753 0.75 +3.4
3,956,329 + MPMX20_03753 0.78 +3.6
3,956,333 + MPMX20_03753 0.78 +0.5
3,956,355 - MPMX20_03753 0.81 -0.1
3,956,424 + MPMX20_03753 0.89 -2.3
3,956,439 + +0.3
3,956,444 + -0.6
3,956,486 - -0.5
3,956,518 + -0.6
3,956,578 + +0.5
3,956,580 + -0.6
3,956,588 - +2.4
3,956,614 - -2.9
3,956,632 + +0.3
3,956,637 + +0.5
3,956,640 - -0.9
3,956,642 + -1.8
3,956,642 + -2.1
3,956,642 + -1.8
3,956,642 + -0.0
3,956,650 - +2.5
3,956,650 - +2.9
3,956,650 - +0.9
3,956,650 - -1.8
3,956,650 - +3.6
3,956,668 - -1.3
3,956,704 + MPMX20_03754 0.15 +1.4
3,956,712 - MPMX20_03754 0.16 -2.1
3,956,729 + MPMX20_03754 0.19 -1.9
3,956,743 + MPMX20_03754 0.22 +1.7
3,956,777 - MPMX20_03754 0.29 -0.1
3,956,830 + MPMX20_03754 0.39 +2.3
3,956,834 - MPMX20_03754 0.39 +0.9
3,956,900 + MPMX20_03754 0.52 -0.8
3,956,900 + MPMX20_03754 0.52 +0.9
3,956,900 + MPMX20_03754 0.52 +3.1
3,956,900 + MPMX20_03754 0.52 +2.0
3,956,970 - MPMX20_03754 0.66 +1.4
3,956,988 + MPMX20_03754 0.69 +0.1
3,957,059 + MPMX20_03754 0.83 -0.7
3,957,062 - MPMX20_03754 0.83 -0.5
3,957,130 + -3.5
3,957,208 + MPMX20_03755 0.13 -0.3
3,957,211 - MPMX20_03755 0.13 +1.5
3,957,212 + MPMX20_03755 0.14 -3.8
3,957,214 + MPMX20_03755 0.14 +0.7
3,957,216 - MPMX20_03755 0.15 -0.8
3,957,216 - MPMX20_03755 0.15 +3.6
3,957,230 - MPMX20_03755 0.18 -0.1
3,957,230 - MPMX20_03755 0.18 +1.6
3,957,237 - MPMX20_03755 0.20 -2.1
3,957,306 - MPMX20_03755 0.36 -2.8
3,957,411 + MPMX20_03755 0.62 -0.3
3,957,427 - MPMX20_03755 0.66 -2.4
3,957,459 - MPMX20_03755 0.74 -3.4
3,957,472 - MPMX20_03755 0.77 +2.5
3,957,476 + MPMX20_03755 0.78 +0.5
3,957,480 + MPMX20_03755 0.79 +2.6
3,957,494 - MPMX20_03755 0.82 -1.5
3,957,514 + MPMX20_03755 0.87 +0.5
3,957,553 - -0.1
3,957,631 - MPMX20_03756 0.31 -0.6
3,957,668 + MPMX20_03756 0.45 -0.9
3,957,668 + MPMX20_03756 0.45 -3.1
3,957,668 + MPMX20_03756 0.45 -2.4
3,957,668 + MPMX20_03756 0.45 -2.1
3,957,676 - MPMX20_03756 0.48 -0.6
3,957,686 + MPMX20_03756 0.52 -2.3
3,957,702 - MPMX20_03756 0.58 +2.1
3,957,715 + MPMX20_03756 0.63 -2.8
3,957,723 - MPMX20_03756 0.66 +1.0
3,957,843 + +1.2
3,957,900 - +1.3
3,957,900 - +2.9
3,957,935 + -1.3
3,957,935 + +1.6
3,957,974 + +2.0
3,957,984 + -0.9
3,958,038 - -0.8

Or see this region's nucleotide sequence