Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03683 and MPMX20_03684 overlap by 4 nucleotides MPMX20_03684 and MPMX20_03685 are separated by 139 nucleotides
MPMX20_03683: MPMX20_03683 - RecBCD enzyme subunit RecB, at 3,876,840 to 3,880,382
_03683
MPMX20_03684: MPMX20_03684 - Protease 3, at 3,880,379 to 3,883,261
_03684
MPMX20_03685: MPMX20_03685 - RecBCD enzyme subunit RecC, at 3,883,401 to 3,886,775
_03685
Position (kb)
3880
3881
3882
3883
3884 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3879.484 kb on + strand, within MPMX20_03683 at 3879.787 kb on - strand, within MPMX20_03683 at 3880.214 kb on - strand at 3880.283 kb on - strand at 3880.296 kb on - strand at 3880.354 kb on + strand at 3880.362 kb on - strand at 3880.376 kb on + strand at 3880.427 kb on + strand at 3880.427 kb on + strand at 3880.435 kb on - strand at 3880.435 kb on - strand at 3880.435 kb on - strand at 3880.450 kb on + strand at 3880.480 kb on - strand at 3880.636 kb on + strand at 3880.644 kb on - strand at 3880.705 kb on + strand, within MPMX20_03684 at 3880.778 kb on + strand, within MPMX20_03684 at 3880.792 kb on + strand, within MPMX20_03684 at 3880.817 kb on + strand, within MPMX20_03684 at 3880.853 kb on + strand, within MPMX20_03684 at 3880.879 kb on + strand, within MPMX20_03684 at 3880.881 kb on + strand, within MPMX20_03684 at 3880.884 kb on - strand, within MPMX20_03684 at 3880.922 kb on + strand, within MPMX20_03684 at 3880.927 kb on + strand, within MPMX20_03684 at 3880.927 kb on + strand, within MPMX20_03684 at 3880.952 kb on - strand, within MPMX20_03684 at 3880.952 kb on - strand, within MPMX20_03684 at 3880.999 kb on - strand, within MPMX20_03684 at 3881.118 kb on + strand, within MPMX20_03684 at 3881.126 kb on - strand, within MPMX20_03684 at 3881.126 kb on - strand, within MPMX20_03684 at 3881.167 kb on - strand, within MPMX20_03684 at 3881.190 kb on - strand, within MPMX20_03684 at 3881.203 kb on + strand, within MPMX20_03684 at 3881.212 kb on + strand, within MPMX20_03684 at 3881.222 kb on + strand, within MPMX20_03684 at 3881.222 kb on + strand, within MPMX20_03684 at 3881.295 kb on + strand, within MPMX20_03684 at 3881.297 kb on + strand, within MPMX20_03684 at 3881.305 kb on - strand, within MPMX20_03684 at 3881.312 kb on - strand, within MPMX20_03684 at 3881.312 kb on - strand, within MPMX20_03684 at 3881.354 kb on - strand, within MPMX20_03684 at 3881.401 kb on - strand, within MPMX20_03684 at 3881.414 kb on - strand, within MPMX20_03684 at 3881.414 kb on - strand, within MPMX20_03684 at 3881.422 kb on - strand, within MPMX20_03684 at 3881.431 kb on + strand, within MPMX20_03684 at 3881.433 kb on + strand, within MPMX20_03684 at 3881.441 kb on - strand, within MPMX20_03684 at 3881.445 kb on + strand, within MPMX20_03684 at 3881.645 kb on + strand, within MPMX20_03684 at 3881.668 kb on + strand, within MPMX20_03684 at 3881.715 kb on + strand, within MPMX20_03684 at 3881.807 kb on + strand, within MPMX20_03684 at 3881.815 kb on - strand, within MPMX20_03684 at 3881.815 kb on - strand, within MPMX20_03684 at 3881.885 kb on + strand, within MPMX20_03684 at 3881.885 kb on + strand, within MPMX20_03684 at 3881.885 kb on + strand, within MPMX20_03684 at 3881.892 kb on - strand, within MPMX20_03684 at 3881.930 kb on + strand, within MPMX20_03684 at 3881.946 kb on + strand, within MPMX20_03684 at 3881.995 kb on + strand, within MPMX20_03684 at 3882.010 kb on - strand, within MPMX20_03684 at 3882.096 kb on + strand, within MPMX20_03684 at 3882.148 kb on - strand, within MPMX20_03684 at 3882.258 kb on + strand, within MPMX20_03684 at 3882.295 kb on - strand, within MPMX20_03684 at 3882.312 kb on - strand, within MPMX20_03684 at 3882.312 kb on - strand, within MPMX20_03684 at 3882.361 kb on - strand, within MPMX20_03684 at 3882.363 kb on + strand, within MPMX20_03684 at 3882.389 kb on + strand, within MPMX20_03684 at 3882.492 kb on + strand, within MPMX20_03684 at 3882.564 kb on + strand, within MPMX20_03684 at 3882.619 kb on + strand, within MPMX20_03684 at 3882.619 kb on + strand, within MPMX20_03684 at 3882.624 kb on + strand, within MPMX20_03684 at 3882.627 kb on - strand, within MPMX20_03684 at 3882.690 kb on + strand, within MPMX20_03684 at 3882.699 kb on - strand, within MPMX20_03684 at 3882.705 kb on + strand, within MPMX20_03684 at 3882.742 kb on + strand, within MPMX20_03684 at 3882.749 kb on + strand, within MPMX20_03684 at 3882.750 kb on - strand, within MPMX20_03684 at 3882.752 kb on - strand, within MPMX20_03684 at 3882.752 kb on - strand, within MPMX20_03684 at 3882.835 kb on + strand, within MPMX20_03684 at 3882.848 kb on - strand, within MPMX20_03684 at 3882.857 kb on + strand, within MPMX20_03684 at 3882.857 kb on + strand, within MPMX20_03684 at 3882.905 kb on - strand, within MPMX20_03684 at 3882.988 kb on + strand at 3882.996 kb on - strand at 3883.005 kb on + strand at 3883.184 kb on + strand at 3883.188 kb on + strand at 3883.196 kb on - strand at 3883.207 kb on - strand at 3883.248 kb on + strand at 3883.399 kb on + strand at 3883.399 kb on + strand at 3883.399 kb on + strand at 3883.407 kb on - strand at 3883.407 kb on - strand at 3883.407 kb on - strand at 3883.412 kb on - strand at 3883.440 kb on - strand at 3883.807 kb on + strand, within MPMX20_03685 at 3883.909 kb on + strand, within MPMX20_03685 at 3883.975 kb on + strand, within MPMX20_03685 at 3884.118 kb on - strand, within MPMX20_03685 at 3884.150 kb on - strand, within MPMX20_03685
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 3,879,484 + MPMX20_03683 0.75 -0.3 3,879,787 - MPMX20_03683 0.83 -0.2 3,880,214 - +0.5 3,880,283 - +1.8 3,880,296 - +3.4 3,880,354 + -2.1 3,880,362 - +0.8 3,880,376 + -2.4 3,880,427 + -1.3 3,880,427 + -3.4 3,880,435 - -0.1 3,880,435 - -3.3 3,880,435 - -2.7 3,880,450 + -2.7 3,880,480 - -0.1 3,880,636 + +0.6 3,880,644 - +1.8 3,880,705 + MPMX20_03684 0.11 +1.4 3,880,778 + MPMX20_03684 0.14 +4.0 3,880,792 + MPMX20_03684 0.14 +1.2 3,880,817 + MPMX20_03684 0.15 -0.3 3,880,853 + MPMX20_03684 0.16 +1.4 3,880,879 + MPMX20_03684 0.17 -0.6 3,880,881 + MPMX20_03684 0.17 -2.9 3,880,884 - MPMX20_03684 0.18 +1.9 3,880,922 + MPMX20_03684 0.19 -1.4 3,880,927 + MPMX20_03684 0.19 +0.3 3,880,927 + MPMX20_03684 0.19 +1.0 3,880,952 - MPMX20_03684 0.20 -3.4 3,880,952 - MPMX20_03684 0.20 -1.4 3,880,999 - MPMX20_03684 0.22 +4.7 3,881,118 + MPMX20_03684 0.26 -1.7 3,881,126 - MPMX20_03684 0.26 -0.7 3,881,126 - MPMX20_03684 0.26 +0.5 3,881,167 - MPMX20_03684 0.27 +3.6 3,881,190 - MPMX20_03684 0.28 -0.6 3,881,203 + MPMX20_03684 0.29 -2.0 3,881,212 + MPMX20_03684 0.29 -2.5 3,881,222 + MPMX20_03684 0.29 +4.1 3,881,222 + MPMX20_03684 0.29 +1.9 3,881,295 + MPMX20_03684 0.32 +1.6 3,881,297 + MPMX20_03684 0.32 -1.7 3,881,305 - MPMX20_03684 0.32 +2.4 3,881,312 - MPMX20_03684 0.32 -2.8 3,881,312 - MPMX20_03684 0.32 -0.6 3,881,354 - MPMX20_03684 0.34 +1.4 3,881,401 - MPMX20_03684 0.35 +1.1 3,881,414 - MPMX20_03684 0.36 -2.1 3,881,414 - MPMX20_03684 0.36 -3.0 3,881,422 - MPMX20_03684 0.36 -0.9 3,881,431 + MPMX20_03684 0.36 +0.2 3,881,433 + MPMX20_03684 0.37 +1.5 3,881,441 - MPMX20_03684 0.37 +0.4 3,881,445 + MPMX20_03684 0.37 +3.4 3,881,645 + MPMX20_03684 0.44 +0.5 3,881,668 + MPMX20_03684 0.45 -2.6 3,881,715 + MPMX20_03684 0.46 +1.8 3,881,807 + MPMX20_03684 0.50 +3.7 3,881,815 - MPMX20_03684 0.50 +0.3 3,881,815 - MPMX20_03684 0.50 +2.4 3,881,885 + MPMX20_03684 0.52 +2.2 3,881,885 + MPMX20_03684 0.52 +1.8 3,881,885 + MPMX20_03684 0.52 -1.4 3,881,892 - MPMX20_03684 0.52 -1.5 3,881,930 + MPMX20_03684 0.54 +0.9 3,881,946 + MPMX20_03684 0.54 +0.8 3,881,995 + MPMX20_03684 0.56 -2.4 3,882,010 - MPMX20_03684 0.57 -1.6 3,882,096 + MPMX20_03684 0.60 +1.5 3,882,148 - MPMX20_03684 0.61 +0.9 3,882,258 + MPMX20_03684 0.65 -1.0 3,882,295 - MPMX20_03684 0.66 +2.1 3,882,312 - MPMX20_03684 0.67 +3.5 3,882,312 - MPMX20_03684 0.67 -0.4 3,882,361 - MPMX20_03684 0.69 -0.5 3,882,363 + MPMX20_03684 0.69 -2.3 3,882,389 + MPMX20_03684 0.70 -1.1 3,882,492 + MPMX20_03684 0.73 -1.5 3,882,564 + MPMX20_03684 0.76 +4.7 3,882,619 + MPMX20_03684 0.78 -2.8 3,882,619 + MPMX20_03684 0.78 -2.9 3,882,624 + MPMX20_03684 0.78 +3.4 3,882,627 - MPMX20_03684 0.78 +3.0 3,882,690 + MPMX20_03684 0.80 -1.7 3,882,699 - MPMX20_03684 0.80 -1.7 3,882,705 + MPMX20_03684 0.81 -3.2 3,882,742 + MPMX20_03684 0.82 +0.7 3,882,749 + MPMX20_03684 0.82 -1.0 3,882,750 - MPMX20_03684 0.82 -2.2 3,882,752 - MPMX20_03684 0.82 +1.0 3,882,752 - MPMX20_03684 0.82 +1.3 3,882,835 + MPMX20_03684 0.85 +1.3 3,882,848 - MPMX20_03684 0.86 -1.4 3,882,857 + MPMX20_03684 0.86 -1.9 3,882,857 + MPMX20_03684 0.86 +2.6 3,882,905 - MPMX20_03684 0.88 +1.6 3,882,988 + +0.0 3,882,996 - +0.3 3,883,005 + +2.8 3,883,184 + -1.7 3,883,188 + +0.7 3,883,196 - -0.5 3,883,207 - +2.6 3,883,248 + +0.5 3,883,399 + +1.4 3,883,399 + +0.6 3,883,399 + -2.2 3,883,407 - -1.4 3,883,407 - -0.1 3,883,407 - +0.0 3,883,412 - +1.7 3,883,440 - -1.3 3,883,807 + MPMX20_03685 0.12 +0.0 3,883,909 + MPMX20_03685 0.15 +0.3 3,883,975 + MPMX20_03685 0.17 +0.8 3,884,118 - MPMX20_03685 0.21 +0.3 3,884,150 - MPMX20_03685 0.22 +1.3
Or see this region's nucleotide sequence