Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03684

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03683 and MPMX20_03684 overlap by 4 nucleotidesMPMX20_03684 and MPMX20_03685 are separated by 139 nucleotides MPMX20_03683: MPMX20_03683 - RecBCD enzyme subunit RecB, at 3,876,840 to 3,880,382 _03683 MPMX20_03684: MPMX20_03684 - Protease 3, at 3,880,379 to 3,883,261 _03684 MPMX20_03685: MPMX20_03685 - RecBCD enzyme subunit RecC, at 3,883,401 to 3,886,775 _03685 Position (kb) 3880 3881 3882 3883 3884Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3879.484 kb on + strand, within MPMX20_03683at 3879.787 kb on - strand, within MPMX20_03683at 3880.214 kb on - strandat 3880.283 kb on - strandat 3880.296 kb on - strandat 3880.354 kb on + strandat 3880.362 kb on - strandat 3880.376 kb on + strandat 3880.427 kb on + strandat 3880.427 kb on + strandat 3880.435 kb on - strandat 3880.435 kb on - strandat 3880.435 kb on - strandat 3880.450 kb on + strandat 3880.480 kb on - strandat 3880.636 kb on + strandat 3880.644 kb on - strandat 3880.705 kb on + strand, within MPMX20_03684at 3880.778 kb on + strand, within MPMX20_03684at 3880.792 kb on + strand, within MPMX20_03684at 3880.817 kb on + strand, within MPMX20_03684at 3880.853 kb on + strand, within MPMX20_03684at 3880.879 kb on + strand, within MPMX20_03684at 3880.881 kb on + strand, within MPMX20_03684at 3880.884 kb on - strand, within MPMX20_03684at 3880.922 kb on + strand, within MPMX20_03684at 3880.927 kb on + strand, within MPMX20_03684at 3880.927 kb on + strand, within MPMX20_03684at 3880.952 kb on - strand, within MPMX20_03684at 3880.952 kb on - strand, within MPMX20_03684at 3880.999 kb on - strand, within MPMX20_03684at 3881.118 kb on + strand, within MPMX20_03684at 3881.126 kb on - strand, within MPMX20_03684at 3881.126 kb on - strand, within MPMX20_03684at 3881.167 kb on - strand, within MPMX20_03684at 3881.190 kb on - strand, within MPMX20_03684at 3881.203 kb on + strand, within MPMX20_03684at 3881.212 kb on + strand, within MPMX20_03684at 3881.222 kb on + strand, within MPMX20_03684at 3881.222 kb on + strand, within MPMX20_03684at 3881.295 kb on + strand, within MPMX20_03684at 3881.297 kb on + strand, within MPMX20_03684at 3881.305 kb on - strand, within MPMX20_03684at 3881.312 kb on - strand, within MPMX20_03684at 3881.312 kb on - strand, within MPMX20_03684at 3881.354 kb on - strand, within MPMX20_03684at 3881.401 kb on - strand, within MPMX20_03684at 3881.414 kb on - strand, within MPMX20_03684at 3881.414 kb on - strand, within MPMX20_03684at 3881.422 kb on - strand, within MPMX20_03684at 3881.431 kb on + strand, within MPMX20_03684at 3881.433 kb on + strand, within MPMX20_03684at 3881.441 kb on - strand, within MPMX20_03684at 3881.445 kb on + strand, within MPMX20_03684at 3881.645 kb on + strand, within MPMX20_03684at 3881.668 kb on + strand, within MPMX20_03684at 3881.715 kb on + strand, within MPMX20_03684at 3881.807 kb on + strand, within MPMX20_03684at 3881.815 kb on - strand, within MPMX20_03684at 3881.815 kb on - strand, within MPMX20_03684at 3881.885 kb on + strand, within MPMX20_03684at 3881.885 kb on + strand, within MPMX20_03684at 3881.885 kb on + strand, within MPMX20_03684at 3881.892 kb on - strand, within MPMX20_03684at 3881.930 kb on + strand, within MPMX20_03684at 3881.946 kb on + strand, within MPMX20_03684at 3881.995 kb on + strand, within MPMX20_03684at 3882.010 kb on - strand, within MPMX20_03684at 3882.096 kb on + strand, within MPMX20_03684at 3882.148 kb on - strand, within MPMX20_03684at 3882.258 kb on + strand, within MPMX20_03684at 3882.295 kb on - strand, within MPMX20_03684at 3882.312 kb on - strand, within MPMX20_03684at 3882.312 kb on - strand, within MPMX20_03684at 3882.361 kb on - strand, within MPMX20_03684at 3882.363 kb on + strand, within MPMX20_03684at 3882.389 kb on + strand, within MPMX20_03684at 3882.492 kb on + strand, within MPMX20_03684at 3882.564 kb on + strand, within MPMX20_03684at 3882.619 kb on + strand, within MPMX20_03684at 3882.619 kb on + strand, within MPMX20_03684at 3882.624 kb on + strand, within MPMX20_03684at 3882.627 kb on - strand, within MPMX20_03684at 3882.690 kb on + strand, within MPMX20_03684at 3882.699 kb on - strand, within MPMX20_03684at 3882.705 kb on + strand, within MPMX20_03684at 3882.742 kb on + strand, within MPMX20_03684at 3882.749 kb on + strand, within MPMX20_03684at 3882.750 kb on - strand, within MPMX20_03684at 3882.752 kb on - strand, within MPMX20_03684at 3882.752 kb on - strand, within MPMX20_03684at 3882.835 kb on + strand, within MPMX20_03684at 3882.848 kb on - strand, within MPMX20_03684at 3882.857 kb on + strand, within MPMX20_03684at 3882.857 kb on + strand, within MPMX20_03684at 3882.905 kb on - strand, within MPMX20_03684at 3882.988 kb on + strandat 3882.996 kb on - strandat 3883.005 kb on + strandat 3883.184 kb on + strandat 3883.188 kb on + strandat 3883.196 kb on - strandat 3883.207 kb on - strandat 3883.248 kb on + strandat 3883.399 kb on + strandat 3883.399 kb on + strandat 3883.399 kb on + strandat 3883.407 kb on - strandat 3883.407 kb on - strandat 3883.407 kb on - strandat 3883.412 kb on - strandat 3883.440 kb on - strandat 3883.807 kb on + strand, within MPMX20_03685at 3883.909 kb on + strand, within MPMX20_03685at 3883.975 kb on + strand, within MPMX20_03685at 3884.118 kb on - strand, within MPMX20_03685at 3884.150 kb on - strand, within MPMX20_03685

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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3,879,484 + MPMX20_03683 0.75 -0.3
3,879,787 - MPMX20_03683 0.83 -0.2
3,880,214 - +0.5
3,880,283 - +1.8
3,880,296 - +3.4
3,880,354 + -2.1
3,880,362 - +0.8
3,880,376 + -2.4
3,880,427 + -1.3
3,880,427 + -3.4
3,880,435 - -0.1
3,880,435 - -3.3
3,880,435 - -2.7
3,880,450 + -2.7
3,880,480 - -0.1
3,880,636 + +0.6
3,880,644 - +1.8
3,880,705 + MPMX20_03684 0.11 +1.4
3,880,778 + MPMX20_03684 0.14 +4.0
3,880,792 + MPMX20_03684 0.14 +1.2
3,880,817 + MPMX20_03684 0.15 -0.3
3,880,853 + MPMX20_03684 0.16 +1.4
3,880,879 + MPMX20_03684 0.17 -0.6
3,880,881 + MPMX20_03684 0.17 -2.9
3,880,884 - MPMX20_03684 0.18 +1.9
3,880,922 + MPMX20_03684 0.19 -1.4
3,880,927 + MPMX20_03684 0.19 +0.3
3,880,927 + MPMX20_03684 0.19 +1.0
3,880,952 - MPMX20_03684 0.20 -3.4
3,880,952 - MPMX20_03684 0.20 -1.4
3,880,999 - MPMX20_03684 0.22 +4.7
3,881,118 + MPMX20_03684 0.26 -1.7
3,881,126 - MPMX20_03684 0.26 -0.7
3,881,126 - MPMX20_03684 0.26 +0.5
3,881,167 - MPMX20_03684 0.27 +3.6
3,881,190 - MPMX20_03684 0.28 -0.6
3,881,203 + MPMX20_03684 0.29 -2.0
3,881,212 + MPMX20_03684 0.29 -2.5
3,881,222 + MPMX20_03684 0.29 +4.1
3,881,222 + MPMX20_03684 0.29 +1.9
3,881,295 + MPMX20_03684 0.32 +1.6
3,881,297 + MPMX20_03684 0.32 -1.7
3,881,305 - MPMX20_03684 0.32 +2.4
3,881,312 - MPMX20_03684 0.32 -2.8
3,881,312 - MPMX20_03684 0.32 -0.6
3,881,354 - MPMX20_03684 0.34 +1.4
3,881,401 - MPMX20_03684 0.35 +1.1
3,881,414 - MPMX20_03684 0.36 -2.1
3,881,414 - MPMX20_03684 0.36 -3.0
3,881,422 - MPMX20_03684 0.36 -0.9
3,881,431 + MPMX20_03684 0.36 +0.2
3,881,433 + MPMX20_03684 0.37 +1.5
3,881,441 - MPMX20_03684 0.37 +0.4
3,881,445 + MPMX20_03684 0.37 +3.4
3,881,645 + MPMX20_03684 0.44 +0.5
3,881,668 + MPMX20_03684 0.45 -2.6
3,881,715 + MPMX20_03684 0.46 +1.8
3,881,807 + MPMX20_03684 0.50 +3.7
3,881,815 - MPMX20_03684 0.50 +0.3
3,881,815 - MPMX20_03684 0.50 +2.4
3,881,885 + MPMX20_03684 0.52 +2.2
3,881,885 + MPMX20_03684 0.52 +1.8
3,881,885 + MPMX20_03684 0.52 -1.4
3,881,892 - MPMX20_03684 0.52 -1.5
3,881,930 + MPMX20_03684 0.54 +0.9
3,881,946 + MPMX20_03684 0.54 +0.8
3,881,995 + MPMX20_03684 0.56 -2.4
3,882,010 - MPMX20_03684 0.57 -1.6
3,882,096 + MPMX20_03684 0.60 +1.5
3,882,148 - MPMX20_03684 0.61 +0.9
3,882,258 + MPMX20_03684 0.65 -1.0
3,882,295 - MPMX20_03684 0.66 +2.1
3,882,312 - MPMX20_03684 0.67 +3.5
3,882,312 - MPMX20_03684 0.67 -0.4
3,882,361 - MPMX20_03684 0.69 -0.5
3,882,363 + MPMX20_03684 0.69 -2.3
3,882,389 + MPMX20_03684 0.70 -1.1
3,882,492 + MPMX20_03684 0.73 -1.5
3,882,564 + MPMX20_03684 0.76 +4.7
3,882,619 + MPMX20_03684 0.78 -2.8
3,882,619 + MPMX20_03684 0.78 -2.9
3,882,624 + MPMX20_03684 0.78 +3.4
3,882,627 - MPMX20_03684 0.78 +3.0
3,882,690 + MPMX20_03684 0.80 -1.7
3,882,699 - MPMX20_03684 0.80 -1.7
3,882,705 + MPMX20_03684 0.81 -3.2
3,882,742 + MPMX20_03684 0.82 +0.7
3,882,749 + MPMX20_03684 0.82 -1.0
3,882,750 - MPMX20_03684 0.82 -2.2
3,882,752 - MPMX20_03684 0.82 +1.0
3,882,752 - MPMX20_03684 0.82 +1.3
3,882,835 + MPMX20_03684 0.85 +1.3
3,882,848 - MPMX20_03684 0.86 -1.4
3,882,857 + MPMX20_03684 0.86 -1.9
3,882,857 + MPMX20_03684 0.86 +2.6
3,882,905 - MPMX20_03684 0.88 +1.6
3,882,988 + +0.0
3,882,996 - +0.3
3,883,005 + +2.8
3,883,184 + -1.7
3,883,188 + +0.7
3,883,196 - -0.5
3,883,207 - +2.6
3,883,248 + +0.5
3,883,399 + +1.4
3,883,399 + +0.6
3,883,399 + -2.2
3,883,407 - -1.4
3,883,407 - -0.1
3,883,407 - +0.0
3,883,412 - +1.7
3,883,440 - -1.3
3,883,807 + MPMX20_03685 0.12 +0.0
3,883,909 + MPMX20_03685 0.15 +0.3
3,883,975 + MPMX20_03685 0.17 +0.8
3,884,118 - MPMX20_03685 0.21 +0.3
3,884,150 - MPMX20_03685 0.22 +1.3

Or see this region's nucleotide sequence