Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03608 and MPMX20_03609 overlap by 4 nucleotides MPMX20_03609 and MPMX20_03610 are separated by 70 nucleotides MPMX20_03610 and MPMX20_03611 are separated by 210 nucleotides MPMX20_03611 and MPMX20_03612 are separated by 3 nucleotides
MPMX20_03608: MPMX20_03608 - Hydrogenase-4 component B, at 3,798,338 to 3,800,152
_03608
MPMX20_03609: MPMX20_03609 - Hydrogenase-4 component A, at 3,800,149 to 3,800,757
_03609
MPMX20_03610: MPMX20_03610 - Formate hydrogenlyase regulatory protein HycA, at 3,800,828 to 3,801,292
_03610
MPMX20_03611: MPMX20_03611 - Hydrogenase maturation factor HypA, at 3,801,503 to 3,801,853
_03611
MPMX20_03612: MPMX20_03612 - Hydrogenase maturation factor HypB, at 3,801,857 to 3,802,720
_03612
Position (kb)
3800
3801
3802 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5 at 3799.838 kb on - strand, within MPMX20_03608 at 3799.838 kb on - strand, within MPMX20_03608 at 3799.897 kb on + strand, within MPMX20_03608 at 3799.897 kb on + strand, within MPMX20_03608 at 3799.897 kb on + strand, within MPMX20_03608 at 3799.897 kb on + strand, within MPMX20_03608 at 3799.897 kb on + strand, within MPMX20_03608 at 3799.897 kb on + strand, within MPMX20_03608 at 3799.897 kb on + strand, within MPMX20_03608 at 3799.897 kb on + strand, within MPMX20_03608 at 3799.905 kb on - strand, within MPMX20_03608 at 3799.905 kb on - strand, within MPMX20_03608 at 3799.905 kb on - strand, within MPMX20_03608 at 3799.905 kb on - strand, within MPMX20_03608 at 3799.905 kb on - strand, within MPMX20_03608 at 3799.905 kb on - strand, within MPMX20_03608 at 3800.050 kb on + strand at 3800.084 kb on + strand at 3800.090 kb on + strand at 3800.172 kb on - strand at 3800.222 kb on - strand, within MPMX20_03609 at 3800.304 kb on - strand, within MPMX20_03609 at 3800.310 kb on + strand, within MPMX20_03609 at 3800.318 kb on - strand, within MPMX20_03609 at 3800.453 kb on - strand, within MPMX20_03609 at 3800.479 kb on + strand, within MPMX20_03609 at 3800.575 kb on - strand, within MPMX20_03609 at 3800.584 kb on + strand, within MPMX20_03609 at 3800.600 kb on + strand, within MPMX20_03609 at 3800.603 kb on + strand, within MPMX20_03609 at 3800.611 kb on - strand, within MPMX20_03609 at 3800.624 kb on - strand, within MPMX20_03609 at 3800.661 kb on + strand, within MPMX20_03609 at 3800.670 kb on - strand, within MPMX20_03609 at 3800.693 kb on - strand, within MPMX20_03609 at 3800.720 kb on + strand at 3800.766 kb on + strand at 3800.802 kb on + strand at 3800.810 kb on - strand at 3800.818 kb on - strand at 3800.866 kb on + strand at 3800.866 kb on + strand at 3800.874 kb on - strand at 3801.008 kb on - strand, within MPMX20_03610 at 3801.034 kb on - strand, within MPMX20_03610 at 3801.066 kb on - strand, within MPMX20_03610 at 3801.128 kb on + strand, within MPMX20_03610 at 3801.129 kb on - strand, within MPMX20_03610 at 3801.137 kb on + strand, within MPMX20_03610 at 3801.142 kb on + strand, within MPMX20_03610 at 3801.142 kb on + strand, within MPMX20_03610 at 3801.142 kb on + strand, within MPMX20_03610 at 3801.145 kb on - strand, within MPMX20_03610 at 3801.152 kb on + strand, within MPMX20_03610 at 3801.152 kb on + strand, within MPMX20_03610 at 3801.155 kb on - strand, within MPMX20_03610 at 3801.160 kb on - strand, within MPMX20_03610 at 3801.160 kb on - strand, within MPMX20_03610 at 3801.160 kb on - strand, within MPMX20_03610 at 3801.174 kb on + strand, within MPMX20_03610 at 3801.196 kb on + strand, within MPMX20_03610 at 3801.204 kb on - strand, within MPMX20_03610 at 3801.218 kb on - strand, within MPMX20_03610 at 3801.245 kb on + strand, within MPMX20_03610 at 3801.263 kb on - strand at 3801.409 kb on - strand at 3801.413 kb on + strand at 3801.423 kb on + strand at 3801.431 kb on - strand at 3801.431 kb on - strand at 3801.433 kb on + strand at 3801.524 kb on - strand at 3801.556 kb on - strand, within MPMX20_03611 at 3801.642 kb on + strand, within MPMX20_03611 at 3801.650 kb on - strand, within MPMX20_03611 at 3801.650 kb on - strand, within MPMX20_03611 at 3801.678 kb on + strand, within MPMX20_03611 at 3801.691 kb on - strand, within MPMX20_03611 at 3801.712 kb on + strand, within MPMX20_03611 at 3801.720 kb on - strand, within MPMX20_03611 at 3801.738 kb on + strand, within MPMX20_03611 at 3801.748 kb on + strand, within MPMX20_03611 at 3801.761 kb on + strand, within MPMX20_03611 at 3801.761 kb on + strand, within MPMX20_03611 at 3801.769 kb on - strand, within MPMX20_03611 at 3801.769 kb on - strand, within MPMX20_03611 at 3801.769 kb on - strand, within MPMX20_03611 at 3801.897 kb on - strand at 3801.900 kb on - strand at 3801.943 kb on + strand at 3801.943 kb on + strand at 3801.979 kb on - strand, within MPMX20_03612 at 3801.993 kb on + strand, within MPMX20_03612 at 3801.995 kb on + strand, within MPMX20_03612 at 3802.003 kb on - strand, within MPMX20_03612 at 3802.003 kb on - strand, within MPMX20_03612 at 3802.207 kb on + strand, within MPMX20_03612 at 3802.220 kb on - strand, within MPMX20_03612 at 3802.263 kb on - strand, within MPMX20_03612
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 3,799,838 - MPMX20_03608 0.83 +1.1 3,799,838 - MPMX20_03608 0.83 -3.2 3,799,897 + MPMX20_03608 0.86 +2.4 3,799,897 + MPMX20_03608 0.86 +2.7 3,799,897 + MPMX20_03608 0.86 -1.4 3,799,897 + MPMX20_03608 0.86 -4.0 3,799,897 + MPMX20_03608 0.86 -3.2 3,799,897 + MPMX20_03608 0.86 -1.9 3,799,897 + MPMX20_03608 0.86 +1.5 3,799,897 + MPMX20_03608 0.86 -1.0 3,799,905 - MPMX20_03608 0.86 +2.2 3,799,905 - MPMX20_03608 0.86 +1.0 3,799,905 - MPMX20_03608 0.86 +2.3 3,799,905 - MPMX20_03608 0.86 -0.6 3,799,905 - MPMX20_03608 0.86 -3.4 3,799,905 - MPMX20_03608 0.86 -2.9 3,800,050 + -2.8 3,800,084 + +0.9 3,800,090 + +2.4 3,800,172 - +0.9 3,800,222 - MPMX20_03609 0.12 +1.8 3,800,304 - MPMX20_03609 0.25 -1.2 3,800,310 + MPMX20_03609 0.26 +2.3 3,800,318 - MPMX20_03609 0.28 -2.5 3,800,453 - MPMX20_03609 0.50 +0.0 3,800,479 + MPMX20_03609 0.54 +0.0 3,800,575 - MPMX20_03609 0.70 -4.1 3,800,584 + MPMX20_03609 0.71 +0.9 3,800,600 + MPMX20_03609 0.74 -0.9 3,800,603 + MPMX20_03609 0.75 +0.2 3,800,611 - MPMX20_03609 0.76 +1.9 3,800,624 - MPMX20_03609 0.78 -2.7 3,800,661 + MPMX20_03609 0.84 -1.6 3,800,670 - MPMX20_03609 0.86 +1.8 3,800,693 - MPMX20_03609 0.89 +3.1 3,800,720 + -0.4 3,800,766 + -2.2 3,800,802 + +0.9 3,800,810 - +2.8 3,800,818 - -3.1 3,800,866 + +2.0 3,800,866 + +0.8 3,800,874 - -1.3 3,801,008 - MPMX20_03610 0.39 -3.2 3,801,034 - MPMX20_03610 0.44 +0.2 3,801,066 - MPMX20_03610 0.51 +1.7 3,801,128 + MPMX20_03610 0.65 +0.1 3,801,129 - MPMX20_03610 0.65 -2.5 3,801,137 + MPMX20_03610 0.66 -0.2 3,801,142 + MPMX20_03610 0.68 +1.7 3,801,142 + MPMX20_03610 0.68 +1.1 3,801,142 + MPMX20_03610 0.68 +1.6 3,801,145 - MPMX20_03610 0.68 -0.1 3,801,152 + MPMX20_03610 0.70 +2.9 3,801,152 + MPMX20_03610 0.70 -0.6 3,801,155 - MPMX20_03610 0.70 -1.0 3,801,160 - MPMX20_03610 0.71 -2.0 3,801,160 - MPMX20_03610 0.71 +1.1 3,801,160 - MPMX20_03610 0.71 +4.9 3,801,174 + MPMX20_03610 0.74 +1.2 3,801,196 + MPMX20_03610 0.79 +3.5 3,801,204 - MPMX20_03610 0.81 +2.3 3,801,218 - MPMX20_03610 0.84 +2.1 3,801,245 + MPMX20_03610 0.90 +0.7 3,801,263 - -3.1 3,801,409 - -1.0 3,801,413 + +1.1 3,801,423 + -2.8 3,801,431 - -1.0 3,801,431 - -1.8 3,801,433 + +0.0 3,801,524 - +1.6 3,801,556 - MPMX20_03611 0.15 -2.1 3,801,642 + MPMX20_03611 0.40 -3.4 3,801,650 - MPMX20_03611 0.42 +0.3 3,801,650 - MPMX20_03611 0.42 -2.9 3,801,678 + MPMX20_03611 0.50 +1.8 3,801,691 - MPMX20_03611 0.54 +2.4 3,801,712 + MPMX20_03611 0.60 -2.7 3,801,720 - MPMX20_03611 0.62 -1.6 3,801,738 + MPMX20_03611 0.67 +0.9 3,801,748 + MPMX20_03611 0.70 +1.5 3,801,761 + MPMX20_03611 0.74 -1.1 3,801,761 + MPMX20_03611 0.74 -2.7 3,801,769 - MPMX20_03611 0.76 +2.1 3,801,769 - MPMX20_03611 0.76 +0.2 3,801,769 - MPMX20_03611 0.76 -0.5 3,801,897 - +1.2 3,801,900 - +3.4 3,801,943 + +1.8 3,801,943 + +3.8 3,801,979 - MPMX20_03612 0.14 +0.0 3,801,993 + MPMX20_03612 0.16 +0.1 3,801,995 + MPMX20_03612 0.16 -0.7 3,802,003 - MPMX20_03612 0.17 -1.6 3,802,003 - MPMX20_03612 0.17 -2.1 3,802,207 + MPMX20_03612 0.41 +0.9 3,802,220 - MPMX20_03612 0.42 +1.7 3,802,263 - MPMX20_03612 0.47 -1.6
Or see this region's nucleotide sequence