Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03610

Experiment: octanoate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_03608 and MPMX20_03609 overlap by 4 nucleotidesMPMX20_03609 and MPMX20_03610 are separated by 70 nucleotidesMPMX20_03610 and MPMX20_03611 are separated by 210 nucleotidesMPMX20_03611 and MPMX20_03612 are separated by 3 nucleotides MPMX20_03608: MPMX20_03608 - Hydrogenase-4 component B, at 3,798,338 to 3,800,152 _03608 MPMX20_03609: MPMX20_03609 - Hydrogenase-4 component A, at 3,800,149 to 3,800,757 _03609 MPMX20_03610: MPMX20_03610 - Formate hydrogenlyase regulatory protein HycA, at 3,800,828 to 3,801,292 _03610 MPMX20_03611: MPMX20_03611 - Hydrogenase maturation factor HypA, at 3,801,503 to 3,801,853 _03611 MPMX20_03612: MPMX20_03612 - Hydrogenase maturation factor HypB, at 3,801,857 to 3,802,720 _03612 Position (kb) 3800 3801 3802Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 3799.838 kb on - strand, within MPMX20_03608at 3799.838 kb on - strand, within MPMX20_03608at 3799.897 kb on + strand, within MPMX20_03608at 3799.897 kb on + strand, within MPMX20_03608at 3799.897 kb on + strand, within MPMX20_03608at 3799.897 kb on + strand, within MPMX20_03608at 3799.897 kb on + strand, within MPMX20_03608at 3799.897 kb on + strand, within MPMX20_03608at 3799.897 kb on + strand, within MPMX20_03608at 3799.897 kb on + strand, within MPMX20_03608at 3799.905 kb on - strand, within MPMX20_03608at 3799.905 kb on - strand, within MPMX20_03608at 3799.905 kb on - strand, within MPMX20_03608at 3799.905 kb on - strand, within MPMX20_03608at 3799.905 kb on - strand, within MPMX20_03608at 3799.905 kb on - strand, within MPMX20_03608at 3800.050 kb on + strandat 3800.084 kb on + strandat 3800.090 kb on + strandat 3800.172 kb on - strandat 3800.222 kb on - strand, within MPMX20_03609at 3800.304 kb on - strand, within MPMX20_03609at 3800.310 kb on + strand, within MPMX20_03609at 3800.318 kb on - strand, within MPMX20_03609at 3800.453 kb on - strand, within MPMX20_03609at 3800.479 kb on + strand, within MPMX20_03609at 3800.575 kb on - strand, within MPMX20_03609at 3800.584 kb on + strand, within MPMX20_03609at 3800.600 kb on + strand, within MPMX20_03609at 3800.603 kb on + strand, within MPMX20_03609at 3800.611 kb on - strand, within MPMX20_03609at 3800.624 kb on - strand, within MPMX20_03609at 3800.661 kb on + strand, within MPMX20_03609at 3800.670 kb on - strand, within MPMX20_03609at 3800.693 kb on - strand, within MPMX20_03609at 3800.720 kb on + strandat 3800.766 kb on + strandat 3800.802 kb on + strandat 3800.810 kb on - strandat 3800.818 kb on - strandat 3800.866 kb on + strandat 3800.866 kb on + strandat 3800.874 kb on - strandat 3801.008 kb on - strand, within MPMX20_03610at 3801.034 kb on - strand, within MPMX20_03610at 3801.066 kb on - strand, within MPMX20_03610at 3801.128 kb on + strand, within MPMX20_03610at 3801.129 kb on - strand, within MPMX20_03610at 3801.137 kb on + strand, within MPMX20_03610at 3801.142 kb on + strand, within MPMX20_03610at 3801.142 kb on + strand, within MPMX20_03610at 3801.142 kb on + strand, within MPMX20_03610at 3801.145 kb on - strand, within MPMX20_03610at 3801.152 kb on + strand, within MPMX20_03610at 3801.152 kb on + strand, within MPMX20_03610at 3801.155 kb on - strand, within MPMX20_03610at 3801.160 kb on - strand, within MPMX20_03610at 3801.160 kb on - strand, within MPMX20_03610at 3801.160 kb on - strand, within MPMX20_03610at 3801.174 kb on + strand, within MPMX20_03610at 3801.196 kb on + strand, within MPMX20_03610at 3801.204 kb on - strand, within MPMX20_03610at 3801.218 kb on - strand, within MPMX20_03610at 3801.245 kb on + strand, within MPMX20_03610at 3801.263 kb on - strandat 3801.409 kb on - strandat 3801.413 kb on + strandat 3801.423 kb on + strandat 3801.431 kb on - strandat 3801.431 kb on - strandat 3801.433 kb on + strandat 3801.524 kb on - strandat 3801.556 kb on - strand, within MPMX20_03611at 3801.642 kb on + strand, within MPMX20_03611at 3801.650 kb on - strand, within MPMX20_03611at 3801.650 kb on - strand, within MPMX20_03611at 3801.678 kb on + strand, within MPMX20_03611at 3801.691 kb on - strand, within MPMX20_03611at 3801.712 kb on + strand, within MPMX20_03611at 3801.720 kb on - strand, within MPMX20_03611at 3801.738 kb on + strand, within MPMX20_03611at 3801.748 kb on + strand, within MPMX20_03611at 3801.761 kb on + strand, within MPMX20_03611at 3801.761 kb on + strand, within MPMX20_03611at 3801.769 kb on - strand, within MPMX20_03611at 3801.769 kb on - strand, within MPMX20_03611at 3801.769 kb on - strand, within MPMX20_03611at 3801.897 kb on - strandat 3801.900 kb on - strandat 3801.943 kb on + strandat 3801.943 kb on + strandat 3801.979 kb on - strand, within MPMX20_03612at 3801.993 kb on + strand, within MPMX20_03612at 3801.995 kb on + strand, within MPMX20_03612at 3802.003 kb on - strand, within MPMX20_03612at 3802.003 kb on - strand, within MPMX20_03612at 3802.207 kb on + strand, within MPMX20_03612at 3802.220 kb on - strand, within MPMX20_03612at 3802.263 kb on - strand, within MPMX20_03612

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
remove
3,799,838 - MPMX20_03608 0.83 +1.1
3,799,838 - MPMX20_03608 0.83 -3.2
3,799,897 + MPMX20_03608 0.86 +2.4
3,799,897 + MPMX20_03608 0.86 +2.7
3,799,897 + MPMX20_03608 0.86 -1.4
3,799,897 + MPMX20_03608 0.86 -4.0
3,799,897 + MPMX20_03608 0.86 -3.2
3,799,897 + MPMX20_03608 0.86 -1.9
3,799,897 + MPMX20_03608 0.86 +1.5
3,799,897 + MPMX20_03608 0.86 -1.0
3,799,905 - MPMX20_03608 0.86 +2.2
3,799,905 - MPMX20_03608 0.86 +1.0
3,799,905 - MPMX20_03608 0.86 +2.3
3,799,905 - MPMX20_03608 0.86 -0.6
3,799,905 - MPMX20_03608 0.86 -3.4
3,799,905 - MPMX20_03608 0.86 -2.9
3,800,050 + -2.8
3,800,084 + +0.9
3,800,090 + +2.4
3,800,172 - +0.9
3,800,222 - MPMX20_03609 0.12 +1.8
3,800,304 - MPMX20_03609 0.25 -1.2
3,800,310 + MPMX20_03609 0.26 +2.3
3,800,318 - MPMX20_03609 0.28 -2.5
3,800,453 - MPMX20_03609 0.50 +0.0
3,800,479 + MPMX20_03609 0.54 +0.0
3,800,575 - MPMX20_03609 0.70 -4.1
3,800,584 + MPMX20_03609 0.71 +0.9
3,800,600 + MPMX20_03609 0.74 -0.9
3,800,603 + MPMX20_03609 0.75 +0.2
3,800,611 - MPMX20_03609 0.76 +1.9
3,800,624 - MPMX20_03609 0.78 -2.7
3,800,661 + MPMX20_03609 0.84 -1.6
3,800,670 - MPMX20_03609 0.86 +1.8
3,800,693 - MPMX20_03609 0.89 +3.1
3,800,720 + -0.4
3,800,766 + -2.2
3,800,802 + +0.9
3,800,810 - +2.8
3,800,818 - -3.1
3,800,866 + +2.0
3,800,866 + +0.8
3,800,874 - -1.3
3,801,008 - MPMX20_03610 0.39 -3.2
3,801,034 - MPMX20_03610 0.44 +0.2
3,801,066 - MPMX20_03610 0.51 +1.7
3,801,128 + MPMX20_03610 0.65 +0.1
3,801,129 - MPMX20_03610 0.65 -2.5
3,801,137 + MPMX20_03610 0.66 -0.2
3,801,142 + MPMX20_03610 0.68 +1.7
3,801,142 + MPMX20_03610 0.68 +1.1
3,801,142 + MPMX20_03610 0.68 +1.6
3,801,145 - MPMX20_03610 0.68 -0.1
3,801,152 + MPMX20_03610 0.70 +2.9
3,801,152 + MPMX20_03610 0.70 -0.6
3,801,155 - MPMX20_03610 0.70 -1.0
3,801,160 - MPMX20_03610 0.71 -2.0
3,801,160 - MPMX20_03610 0.71 +1.1
3,801,160 - MPMX20_03610 0.71 +4.9
3,801,174 + MPMX20_03610 0.74 +1.2
3,801,196 + MPMX20_03610 0.79 +3.5
3,801,204 - MPMX20_03610 0.81 +2.3
3,801,218 - MPMX20_03610 0.84 +2.1
3,801,245 + MPMX20_03610 0.90 +0.7
3,801,263 - -3.1
3,801,409 - -1.0
3,801,413 + +1.1
3,801,423 + -2.8
3,801,431 - -1.0
3,801,431 - -1.8
3,801,433 + +0.0
3,801,524 - +1.6
3,801,556 - MPMX20_03611 0.15 -2.1
3,801,642 + MPMX20_03611 0.40 -3.4
3,801,650 - MPMX20_03611 0.42 +0.3
3,801,650 - MPMX20_03611 0.42 -2.9
3,801,678 + MPMX20_03611 0.50 +1.8
3,801,691 - MPMX20_03611 0.54 +2.4
3,801,712 + MPMX20_03611 0.60 -2.7
3,801,720 - MPMX20_03611 0.62 -1.6
3,801,738 + MPMX20_03611 0.67 +0.9
3,801,748 + MPMX20_03611 0.70 +1.5
3,801,761 + MPMX20_03611 0.74 -1.1
3,801,761 + MPMX20_03611 0.74 -2.7
3,801,769 - MPMX20_03611 0.76 +2.1
3,801,769 - MPMX20_03611 0.76 +0.2
3,801,769 - MPMX20_03611 0.76 -0.5
3,801,897 - +1.2
3,801,900 - +3.4
3,801,943 + +1.8
3,801,943 + +3.8
3,801,979 - MPMX20_03612 0.14 +0.0
3,801,993 + MPMX20_03612 0.16 +0.1
3,801,995 + MPMX20_03612 0.16 -0.7
3,802,003 - MPMX20_03612 0.17 -1.6
3,802,003 - MPMX20_03612 0.17 -2.1
3,802,207 + MPMX20_03612 0.41 +0.9
3,802,220 - MPMX20_03612 0.42 +1.7
3,802,263 - MPMX20_03612 0.47 -1.6

Or see this region's nucleotide sequence