Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03605

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03603 and MPMX20_03604 overlap by 4 nucleotidesMPMX20_03604 and MPMX20_03605 overlap by 1 nucleotidesMPMX20_03605 and MPMX20_03606 are separated by 93 nucleotides MPMX20_03603: MPMX20_03603 - hypothetical protein, at 3,793,878 to 3,794,288 _03603 MPMX20_03604: MPMX20_03604 - Formate hydrogenlyase subunit 7, at 3,794,285 to 3,795,052 _03604 MPMX20_03605: MPMX20_03605 - NAD(P)H-quinone oxidoreductase subunit I, chloroplastic, at 3,795,052 to 3,795,594 _03605 MPMX20_03606: MPMX20_03606 - Formate hydrogenlyase subunit 5, at 3,795,688 to 3,797,397 _03606 Position (kb) 3795 3796Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 3794.086 kb on + strand, within MPMX20_03603at 3794.092 kb on + strand, within MPMX20_03603at 3794.094 kb on - strand, within MPMX20_03603at 3794.096 kb on + strand, within MPMX20_03603at 3794.096 kb on + strand, within MPMX20_03603at 3794.096 kb on + strand, within MPMX20_03603at 3794.100 kb on - strand, within MPMX20_03603at 3794.104 kb on - strand, within MPMX20_03603at 3794.104 kb on - strand, within MPMX20_03603at 3794.118 kb on - strand, within MPMX20_03603at 3794.128 kb on + strand, within MPMX20_03603at 3794.147 kb on - strand, within MPMX20_03603at 3794.147 kb on - strand, within MPMX20_03603at 3794.160 kb on + strand, within MPMX20_03603at 3794.167 kb on + strand, within MPMX20_03603at 3794.175 kb on + strand, within MPMX20_03603at 3794.204 kb on - strand, within MPMX20_03603at 3794.230 kb on + strand, within MPMX20_03603at 3794.230 kb on + strand, within MPMX20_03603at 3794.238 kb on - strand, within MPMX20_03603at 3794.367 kb on - strand, within MPMX20_03604at 3794.367 kb on - strand, within MPMX20_03604at 3794.380 kb on + strand, within MPMX20_03604at 3794.490 kb on + strand, within MPMX20_03604at 3794.539 kb on + strand, within MPMX20_03604at 3794.547 kb on - strand, within MPMX20_03604at 3794.547 kb on - strand, within MPMX20_03604at 3794.547 kb on - strand, within MPMX20_03604at 3794.547 kb on - strand, within MPMX20_03604at 3794.666 kb on - strand, within MPMX20_03604at 3794.673 kb on + strand, within MPMX20_03604at 3794.673 kb on + strand, within MPMX20_03604at 3794.675 kb on + strand, within MPMX20_03604at 3794.680 kb on + strand, within MPMX20_03604at 3794.680 kb on + strand, within MPMX20_03604at 3794.681 kb on - strand, within MPMX20_03604at 3794.681 kb on - strand, within MPMX20_03604at 3794.681 kb on - strand, within MPMX20_03604at 3794.705 kb on + strand, within MPMX20_03604at 3794.929 kb on - strand, within MPMX20_03604at 3794.971 kb on + strand, within MPMX20_03604at 3795.076 kb on + strandat 3795.115 kb on - strand, within MPMX20_03605at 3795.174 kb on - strand, within MPMX20_03605at 3795.380 kb on + strand, within MPMX20_03605at 3795.480 kb on + strand, within MPMX20_03605at 3795.486 kb on - strand, within MPMX20_03605at 3795.486 kb on - strand, within MPMX20_03605at 3795.488 kb on - strand, within MPMX20_03605at 3795.630 kb on + strandat 3795.652 kb on + strandat 3795.652 kb on + strandat 3795.666 kb on - strandat 3795.666 kb on - strandat 3795.854 kb on - strandat 3795.881 kb on - strand, within MPMX20_03606at 3795.952 kb on - strand, within MPMX20_03606at 3795.990 kb on - strand, within MPMX20_03606at 3796.005 kb on - strand, within MPMX20_03606at 3796.043 kb on + strand, within MPMX20_03606at 3796.061 kb on - strand, within MPMX20_03606at 3796.078 kb on + strand, within MPMX20_03606at 3796.134 kb on - strand, within MPMX20_03606at 3796.145 kb on + strand, within MPMX20_03606at 3796.145 kb on + strand, within MPMX20_03606at 3796.145 kb on + strand, within MPMX20_03606at 3796.145 kb on + strand, within MPMX20_03606at 3796.153 kb on - strand, within MPMX20_03606at 3796.153 kb on - strand, within MPMX20_03606at 3796.153 kb on - strand, within MPMX20_03606at 3796.153 kb on - strand, within MPMX20_03606at 3796.153 kb on - strand, within MPMX20_03606at 3796.153 kb on - strand, within MPMX20_03606at 3796.153 kb on - strand, within MPMX20_03606at 3796.153 kb on - strand, within MPMX20_03606at 3796.153 kb on - strand, within MPMX20_03606at 3796.166 kb on - strand, within MPMX20_03606at 3796.218 kb on + strand, within MPMX20_03606at 3796.223 kb on + strand, within MPMX20_03606at 3796.279 kb on - strand, within MPMX20_03606at 3796.295 kb on - strand, within MPMX20_03606at 3796.324 kb on + strand, within MPMX20_03606at 3796.334 kb on - strand, within MPMX20_03606at 3796.413 kb on + strand, within MPMX20_03606at 3796.413 kb on + strand, within MPMX20_03606at 3796.413 kb on + strand, within MPMX20_03606at 3796.413 kb on + strand, within MPMX20_03606at 3796.413 kb on + strand, within MPMX20_03606at 3796.413 kb on + strand, within MPMX20_03606at 3796.533 kb on - strand, within MPMX20_03606at 3796.593 kb on - strand, within MPMX20_03606

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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3,794,086 + MPMX20_03603 0.51 +0.2
3,794,092 + MPMX20_03603 0.52 -0.9
3,794,094 - MPMX20_03603 0.53 -3.2
3,794,096 + MPMX20_03603 0.53 -1.7
3,794,096 + MPMX20_03603 0.53 -2.4
3,794,096 + MPMX20_03603 0.53 +1.5
3,794,100 - MPMX20_03603 0.54 -2.9
3,794,104 - MPMX20_03603 0.55 -3.9
3,794,104 - MPMX20_03603 0.55 +1.9
3,794,118 - MPMX20_03603 0.58 +3.0
3,794,128 + MPMX20_03603 0.61 +1.8
3,794,147 - MPMX20_03603 0.65 +0.0
3,794,147 - MPMX20_03603 0.65 +2.6
3,794,160 + MPMX20_03603 0.69 -4.1
3,794,167 + MPMX20_03603 0.70 +0.8
3,794,175 + MPMX20_03603 0.72 -1.7
3,794,204 - MPMX20_03603 0.79 -1.0
3,794,230 + MPMX20_03603 0.86 +1.0
3,794,230 + MPMX20_03603 0.86 -2.7
3,794,238 - MPMX20_03603 0.88 -2.1
3,794,367 - MPMX20_03604 0.11 -3.4
3,794,367 - MPMX20_03604 0.11 +1.1
3,794,380 + MPMX20_03604 0.12 -3.7
3,794,490 + MPMX20_03604 0.27 -1.4
3,794,539 + MPMX20_03604 0.33 -1.2
3,794,547 - MPMX20_03604 0.34 +1.5
3,794,547 - MPMX20_03604 0.34 +0.6
3,794,547 - MPMX20_03604 0.34 -3.1
3,794,547 - MPMX20_03604 0.34 -2.0
3,794,666 - MPMX20_03604 0.50 -0.8
3,794,673 + MPMX20_03604 0.51 -4.2
3,794,673 + MPMX20_03604 0.51 +1.2
3,794,675 + MPMX20_03604 0.51 -1.5
3,794,680 + MPMX20_03604 0.51 -2.0
3,794,680 + MPMX20_03604 0.51 +0.5
3,794,681 - MPMX20_03604 0.52 -2.7
3,794,681 - MPMX20_03604 0.52 -2.5
3,794,681 - MPMX20_03604 0.52 -0.9
3,794,705 + MPMX20_03604 0.55 +2.7
3,794,929 - MPMX20_03604 0.84 +3.4
3,794,971 + MPMX20_03604 0.89 -3.4
3,795,076 + +0.6
3,795,115 - MPMX20_03605 0.12 -0.0
3,795,174 - MPMX20_03605 0.22 +1.8
3,795,380 + MPMX20_03605 0.60 +3.9
3,795,480 + MPMX20_03605 0.79 -2.8
3,795,486 - MPMX20_03605 0.80 +1.0
3,795,486 - MPMX20_03605 0.80 -3.1
3,795,488 - MPMX20_03605 0.80 +1.5
3,795,630 + -2.5
3,795,652 + +1.4
3,795,652 + -1.5
3,795,666 - +0.8
3,795,666 - -1.2
3,795,854 - -3.5
3,795,881 - MPMX20_03606 0.11 -2.9
3,795,952 - MPMX20_03606 0.15 -2.9
3,795,990 - MPMX20_03606 0.18 +0.3
3,796,005 - MPMX20_03606 0.19 -3.8
3,796,043 + MPMX20_03606 0.21 +3.2
3,796,061 - MPMX20_03606 0.22 +2.7
3,796,078 + MPMX20_03606 0.23 +0.3
3,796,134 - MPMX20_03606 0.26 -1.2
3,796,145 + MPMX20_03606 0.27 +0.9
3,796,145 + MPMX20_03606 0.27 +1.7
3,796,145 + MPMX20_03606 0.27 -0.8
3,796,145 + MPMX20_03606 0.27 -0.2
3,796,153 - MPMX20_03606 0.27 -0.2
3,796,153 - MPMX20_03606 0.27 -2.4
3,796,153 - MPMX20_03606 0.27 -1.0
3,796,153 - MPMX20_03606 0.27 -4.0
3,796,153 - MPMX20_03606 0.27 +2.1
3,796,153 - MPMX20_03606 0.27 +1.3
3,796,153 - MPMX20_03606 0.27 -0.2
3,796,153 - MPMX20_03606 0.27 -0.0
3,796,153 - MPMX20_03606 0.27 +0.8
3,796,166 - MPMX20_03606 0.28 -2.9
3,796,218 + MPMX20_03606 0.31 -2.3
3,796,223 + MPMX20_03606 0.31 +1.5
3,796,279 - MPMX20_03606 0.35 -3.0
3,796,295 - MPMX20_03606 0.35 -1.8
3,796,324 + MPMX20_03606 0.37 -2.7
3,796,334 - MPMX20_03606 0.38 -3.8
3,796,413 + MPMX20_03606 0.42 -3.8
3,796,413 + MPMX20_03606 0.42 -0.7
3,796,413 + MPMX20_03606 0.42 -0.5
3,796,413 + MPMX20_03606 0.42 -1.8
3,796,413 + MPMX20_03606 0.42 -1.5
3,796,413 + MPMX20_03606 0.42 +2.7
3,796,533 - MPMX20_03606 0.49 -1.4
3,796,593 - MPMX20_03606 0.53 -2.2

Or see this region's nucleotide sequence