Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03540

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03539 and MPMX20_03540 are separated by 16 nucleotidesMPMX20_03540 and MPMX20_03541 are separated by 2 nucleotides MPMX20_03539: MPMX20_03539 - hypothetical protein, at 3,734,024 to 3,735,403 _03539 MPMX20_03540: MPMX20_03540 - Carbamate kinase 1, at 3,735,420 to 3,736,412 _03540 MPMX20_03541: MPMX20_03541 - hypothetical protein, at 3,736,415 to 3,737,959 _03541 Position (kb) 3735 3736 3737Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3734.468 kb on - strand, within MPMX20_03539at 3734.578 kb on + strand, within MPMX20_03539at 3734.621 kb on - strand, within MPMX20_03539at 3734.684 kb on + strand, within MPMX20_03539at 3734.684 kb on + strand, within MPMX20_03539at 3734.692 kb on - strand, within MPMX20_03539at 3734.711 kb on - strand, within MPMX20_03539at 3734.749 kb on - strand, within MPMX20_03539at 3734.861 kb on + strand, within MPMX20_03539at 3734.892 kb on + strand, within MPMX20_03539at 3734.914 kb on + strand, within MPMX20_03539at 3734.919 kb on + strand, within MPMX20_03539at 3734.927 kb on - strand, within MPMX20_03539at 3734.927 kb on - strand, within MPMX20_03539at 3734.933 kb on - strand, within MPMX20_03539at 3735.003 kb on + strand, within MPMX20_03539at 3735.089 kb on + strand, within MPMX20_03539at 3735.089 kb on - strand, within MPMX20_03539at 3735.182 kb on - strand, within MPMX20_03539at 3735.216 kb on + strand, within MPMX20_03539at 3735.216 kb on + strand, within MPMX20_03539at 3735.216 kb on + strand, within MPMX20_03539at 3735.216 kb on + strand, within MPMX20_03539at 3735.224 kb on - strand, within MPMX20_03539at 3735.236 kb on - strand, within MPMX20_03539at 3735.245 kb on - strand, within MPMX20_03539at 3735.252 kb on + strand, within MPMX20_03539at 3735.327 kb on + strandat 3735.335 kb on - strandat 3735.427 kb on + strandat 3735.486 kb on - strandat 3735.599 kb on + strand, within MPMX20_03540at 3735.675 kb on - strand, within MPMX20_03540at 3735.774 kb on - strand, within MPMX20_03540at 3735.786 kb on + strand, within MPMX20_03540at 3735.933 kb on - strand, within MPMX20_03540at 3735.933 kb on - strand, within MPMX20_03540at 3736.017 kb on - strand, within MPMX20_03540at 3736.017 kb on - strand, within MPMX20_03540at 3736.018 kb on + strand, within MPMX20_03540at 3736.026 kb on - strand, within MPMX20_03540at 3736.026 kb on - strand, within MPMX20_03540at 3736.101 kb on + strand, within MPMX20_03540at 3736.121 kb on + strand, within MPMX20_03540at 3736.149 kb on + strand, within MPMX20_03540at 3736.185 kb on + strand, within MPMX20_03540at 3736.190 kb on + strand, within MPMX20_03540at 3736.193 kb on - strand, within MPMX20_03540at 3736.198 kb on - strand, within MPMX20_03540at 3736.198 kb on - strand, within MPMX20_03540at 3736.198 kb on - strand, within MPMX20_03540at 3736.218 kb on - strand, within MPMX20_03540at 3736.222 kb on - strand, within MPMX20_03540at 3736.262 kb on - strand, within MPMX20_03540at 3736.262 kb on - strand, within MPMX20_03540at 3736.285 kb on + strand, within MPMX20_03540at 3736.293 kb on - strand, within MPMX20_03540at 3736.293 kb on - strand, within MPMX20_03540at 3736.293 kb on - strand, within MPMX20_03540at 3736.293 kb on - strand, within MPMX20_03540at 3736.293 kb on - strand, within MPMX20_03540at 3736.305 kb on + strand, within MPMX20_03540at 3736.372 kb on - strandat 3736.372 kb on - strandat 3736.372 kb on - strandat 3736.537 kb on - strandat 3736.622 kb on + strand, within MPMX20_03541at 3736.657 kb on - strand, within MPMX20_03541at 3736.672 kb on + strand, within MPMX20_03541at 3736.677 kb on + strand, within MPMX20_03541at 3736.685 kb on - strand, within MPMX20_03541at 3736.685 kb on - strand, within MPMX20_03541at 3736.762 kb on - strand, within MPMX20_03541at 3736.840 kb on + strand, within MPMX20_03541at 3736.848 kb on - strand, within MPMX20_03541at 3736.852 kb on + strand, within MPMX20_03541at 3736.924 kb on + strand, within MPMX20_03541at 3736.945 kb on + strand, within MPMX20_03541at 3736.981 kb on + strand, within MPMX20_03541at 3736.983 kb on + strand, within MPMX20_03541at 3737.007 kb on - strand, within MPMX20_03541at 3737.037 kb on + strand, within MPMX20_03541at 3737.061 kb on + strand, within MPMX20_03541at 3737.078 kb on + strand, within MPMX20_03541at 3737.111 kb on - strand, within MPMX20_03541at 3737.123 kb on + strand, within MPMX20_03541at 3737.268 kb on - strand, within MPMX20_03541at 3737.269 kb on + strand, within MPMX20_03541at 3737.305 kb on + strand, within MPMX20_03541at 3737.305 kb on + strand, within MPMX20_03541at 3737.313 kb on - strand, within MPMX20_03541at 3737.313 kb on - strand, within MPMX20_03541at 3737.322 kb on + strand, within MPMX20_03541at 3737.330 kb on - strand, within MPMX20_03541at 3737.330 kb on - strand, within MPMX20_03541

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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3,734,468 - MPMX20_03539 0.32 +2.0
3,734,578 + MPMX20_03539 0.40 -1.3
3,734,621 - MPMX20_03539 0.43 -0.5
3,734,684 + MPMX20_03539 0.48 +0.2
3,734,684 + MPMX20_03539 0.48 +0.5
3,734,692 - MPMX20_03539 0.48 +1.3
3,734,711 - MPMX20_03539 0.50 +0.2
3,734,749 - MPMX20_03539 0.53 -0.4
3,734,861 + MPMX20_03539 0.61 +0.3
3,734,892 + MPMX20_03539 0.63 -0.2
3,734,914 + MPMX20_03539 0.64 +2.1
3,734,919 + MPMX20_03539 0.65 -1.1
3,734,927 - MPMX20_03539 0.65 -0.2
3,734,927 - MPMX20_03539 0.65 +1.4
3,734,933 - MPMX20_03539 0.66 +2.2
3,735,003 + MPMX20_03539 0.71 -2.0
3,735,089 + MPMX20_03539 0.77 +3.2
3,735,089 - MPMX20_03539 0.77 +2.4
3,735,182 - MPMX20_03539 0.84 -3.3
3,735,216 + MPMX20_03539 0.86 -2.4
3,735,216 + MPMX20_03539 0.86 -2.5
3,735,216 + MPMX20_03539 0.86 -1.3
3,735,216 + MPMX20_03539 0.86 +0.3
3,735,224 - MPMX20_03539 0.87 -0.9
3,735,236 - MPMX20_03539 0.88 -1.7
3,735,245 - MPMX20_03539 0.88 -0.6
3,735,252 + MPMX20_03539 0.89 +2.5
3,735,327 + -2.8
3,735,335 - -3.2
3,735,427 + -1.9
3,735,486 - -1.9
3,735,599 + MPMX20_03540 0.18 -0.2
3,735,675 - MPMX20_03540 0.26 -1.3
3,735,774 - MPMX20_03540 0.36 +2.0
3,735,786 + MPMX20_03540 0.37 -1.8
3,735,933 - MPMX20_03540 0.52 -1.0
3,735,933 - MPMX20_03540 0.52 +1.8
3,736,017 - MPMX20_03540 0.60 -0.6
3,736,017 - MPMX20_03540 0.60 +1.7
3,736,018 + MPMX20_03540 0.60 +2.3
3,736,026 - MPMX20_03540 0.61 +1.4
3,736,026 - MPMX20_03540 0.61 +1.6
3,736,101 + MPMX20_03540 0.69 +0.0
3,736,121 + MPMX20_03540 0.71 -2.6
3,736,149 + MPMX20_03540 0.73 -0.3
3,736,185 + MPMX20_03540 0.77 -2.3
3,736,190 + MPMX20_03540 0.78 +1.6
3,736,193 - MPMX20_03540 0.78 -2.5
3,736,198 - MPMX20_03540 0.78 +1.5
3,736,198 - MPMX20_03540 0.78 +0.1
3,736,198 - MPMX20_03540 0.78 +1.5
3,736,218 - MPMX20_03540 0.80 -0.1
3,736,222 - MPMX20_03540 0.81 +1.3
3,736,262 - MPMX20_03540 0.85 -1.4
3,736,262 - MPMX20_03540 0.85 -2.8
3,736,285 + MPMX20_03540 0.87 -1.3
3,736,293 - MPMX20_03540 0.88 +0.5
3,736,293 - MPMX20_03540 0.88 +0.1
3,736,293 - MPMX20_03540 0.88 +2.1
3,736,293 - MPMX20_03540 0.88 +1.3
3,736,293 - MPMX20_03540 0.88 -2.4
3,736,305 + MPMX20_03540 0.89 +2.5
3,736,372 - -1.4
3,736,372 - +0.1
3,736,372 - -1.3
3,736,537 - -2.5
3,736,622 + MPMX20_03541 0.13 +1.6
3,736,657 - MPMX20_03541 0.16 +2.0
3,736,672 + MPMX20_03541 0.17 -2.5
3,736,677 + MPMX20_03541 0.17 -4.3
3,736,685 - MPMX20_03541 0.17 +2.3
3,736,685 - MPMX20_03541 0.17 +0.1
3,736,762 - MPMX20_03541 0.22 +0.1
3,736,840 + MPMX20_03541 0.28 -0.2
3,736,848 - MPMX20_03541 0.28 -3.1
3,736,852 + MPMX20_03541 0.28 +1.3
3,736,924 + MPMX20_03541 0.33 -3.6
3,736,945 + MPMX20_03541 0.34 +2.8
3,736,981 + MPMX20_03541 0.37 -0.8
3,736,983 + MPMX20_03541 0.37 +1.9
3,737,007 - MPMX20_03541 0.38 -1.7
3,737,037 + MPMX20_03541 0.40 +1.2
3,737,061 + MPMX20_03541 0.42 -0.2
3,737,078 + MPMX20_03541 0.43 -3.7
3,737,111 - MPMX20_03541 0.45 +0.6
3,737,123 + MPMX20_03541 0.46 -0.8
3,737,268 - MPMX20_03541 0.55 +0.8
3,737,269 + MPMX20_03541 0.55 +1.8
3,737,305 + MPMX20_03541 0.58 -0.2
3,737,305 + MPMX20_03541 0.58 +0.7
3,737,313 - MPMX20_03541 0.58 +1.1
3,737,313 - MPMX20_03541 0.58 +1.9
3,737,322 + MPMX20_03541 0.59 -3.6
3,737,330 - MPMX20_03541 0.59 -1.0
3,737,330 - MPMX20_03541 0.59 -2.4

Or see this region's nucleotide sequence