Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03465

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03464 and MPMX20_03465 are separated by 267 nucleotidesMPMX20_03465 and MPMX20_03466 are separated by 258 nucleotides MPMX20_03464: MPMX20_03464 - Outer membrane protein assembly factor BamD, at 3,655,932 to 3,656,669 _03464 MPMX20_03465: MPMX20_03465 - Ribosome-associated inhibitor A, at 3,656,937 to 3,657,278 _03465 MPMX20_03466: MPMX20_03466 - Bifunctional chorismate mutase/prephenate dehydratase, at 3,657,537 to 3,658,697 _03466 Position (kb) 3656 3657 3658Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3656.597 kb on + strandat 3656.629 kb on - strandat 3656.629 kb on - strandat 3656.740 kb on + strandat 3656.757 kb on - strandat 3656.807 kb on + strandat 3656.963 kb on + strandat 3657.049 kb on + strand, within MPMX20_03465at 3657.052 kb on - strand, within MPMX20_03465at 3657.066 kb on - strand, within MPMX20_03465at 3657.067 kb on - strand, within MPMX20_03465at 3657.075 kb on + strand, within MPMX20_03465at 3657.101 kb on - strand, within MPMX20_03465at 3657.203 kb on + strand, within MPMX20_03465at 3657.218 kb on - strand, within MPMX20_03465at 3657.218 kb on - strand, within MPMX20_03465at 3657.218 kb on - strand, within MPMX20_03465at 3657.251 kb on - strandat 3657.342 kb on + strandat 3657.353 kb on + strandat 3657.403 kb on - strandat 3657.424 kb on + strandat 3657.473 kb on + strandat 3657.481 kb on - strandat 3657.481 kb on - strandat 3657.481 kb on - strandat 3657.521 kb on + strandat 3657.528 kb on + strandat 3657.533 kb on + strandat 3657.551 kb on + strandat 3657.551 kb on + strandat 3657.564 kb on - strandat 3657.570 kb on + strandat 3657.616 kb on - strandat 3657.616 kb on - strandat 3657.619 kb on - strandat 3657.669 kb on - strand, within MPMX20_03466at 3657.680 kb on - strand, within MPMX20_03466at 3657.709 kb on + strand, within MPMX20_03466at 3657.797 kb on - strand, within MPMX20_03466at 3657.802 kb on - strand, within MPMX20_03466at 3657.844 kb on + strand, within MPMX20_03466at 3657.849 kb on + strand, within MPMX20_03466at 3657.895 kb on - strand, within MPMX20_03466at 3657.899 kb on + strand, within MPMX20_03466at 3657.907 kb on - strand, within MPMX20_03466at 3657.925 kb on + strand, within MPMX20_03466at 3657.986 kb on + strand, within MPMX20_03466at 3658.021 kb on + strand, within MPMX20_03466at 3658.021 kb on + strand, within MPMX20_03466at 3658.058 kb on + strand, within MPMX20_03466at 3658.060 kb on + strand, within MPMX20_03466at 3658.066 kb on - strand, within MPMX20_03466at 3658.068 kb on - strand, within MPMX20_03466at 3658.123 kb on - strand, within MPMX20_03466at 3658.126 kb on + strand, within MPMX20_03466at 3658.152 kb on + strand, within MPMX20_03466at 3658.160 kb on - strand, within MPMX20_03466at 3658.160 kb on - strand, within MPMX20_03466at 3658.160 kb on - strand, within MPMX20_03466at 3658.160 kb on - strand, within MPMX20_03466at 3658.171 kb on + strand, within MPMX20_03466at 3658.178 kb on + strand, within MPMX20_03466at 3658.181 kb on + strand, within MPMX20_03466at 3658.245 kb on - strand, within MPMX20_03466at 3658.245 kb on - strand, within MPMX20_03466

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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3,656,597 + -0.4
3,656,629 - +0.2
3,656,629 - +1.3
3,656,740 + -0.7
3,656,757 - -1.0
3,656,807 + +0.3
3,656,963 + +0.9
3,657,049 + MPMX20_03465 0.33 +0.2
3,657,052 - MPMX20_03465 0.34 -3.4
3,657,066 - MPMX20_03465 0.38 -1.8
3,657,067 - MPMX20_03465 0.38 -0.8
3,657,075 + MPMX20_03465 0.40 +1.2
3,657,101 - MPMX20_03465 0.48 +1.3
3,657,203 + MPMX20_03465 0.78 +2.9
3,657,218 - MPMX20_03465 0.82 +0.4
3,657,218 - MPMX20_03465 0.82 +0.2
3,657,218 - MPMX20_03465 0.82 +2.7
3,657,251 - -2.1
3,657,342 + -2.2
3,657,353 + +0.2
3,657,403 - +1.5
3,657,424 + -3.4
3,657,473 + +0.7
3,657,481 - +1.1
3,657,481 - +0.3
3,657,481 - +1.3
3,657,521 + +0.6
3,657,528 + -1.3
3,657,533 + +2.5
3,657,551 + +1.4
3,657,551 + -1.6
3,657,564 - +2.0
3,657,570 + +4.3
3,657,616 - +1.6
3,657,616 - +0.2
3,657,619 - -2.5
3,657,669 - MPMX20_03466 0.11 +2.3
3,657,680 - MPMX20_03466 0.12 -0.1
3,657,709 + MPMX20_03466 0.15 -3.4
3,657,797 - MPMX20_03466 0.22 -0.4
3,657,802 - MPMX20_03466 0.23 +1.1
3,657,844 + MPMX20_03466 0.26 +0.5
3,657,849 + MPMX20_03466 0.27 +1.0
3,657,895 - MPMX20_03466 0.31 +1.6
3,657,899 + MPMX20_03466 0.31 +1.4
3,657,907 - MPMX20_03466 0.32 +1.0
3,657,925 + MPMX20_03466 0.33 +0.2
3,657,986 + MPMX20_03466 0.39 -0.7
3,658,021 + MPMX20_03466 0.42 -1.6
3,658,021 + MPMX20_03466 0.42 -1.9
3,658,058 + MPMX20_03466 0.45 +1.0
3,658,060 + MPMX20_03466 0.45 -0.8
3,658,066 - MPMX20_03466 0.46 -1.8
3,658,068 - MPMX20_03466 0.46 -2.9
3,658,123 - MPMX20_03466 0.50 -1.8
3,658,126 + MPMX20_03466 0.51 -0.3
3,658,152 + MPMX20_03466 0.53 -0.2
3,658,160 - MPMX20_03466 0.54 -2.6
3,658,160 - MPMX20_03466 0.54 +0.2
3,658,160 - MPMX20_03466 0.54 -2.5
3,658,160 - MPMX20_03466 0.54 -3.3
3,658,171 + MPMX20_03466 0.55 +2.1
3,658,178 + MPMX20_03466 0.55 -2.0
3,658,181 + MPMX20_03466 0.55 -0.2
3,658,245 - MPMX20_03466 0.61 +2.1
3,658,245 - MPMX20_03466 0.61 +1.8

Or see this region's nucleotide sequence