Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03464 and MPMX20_03465 are separated by 267 nucleotides MPMX20_03465 and MPMX20_03466 are separated by 258 nucleotides
MPMX20_03464: MPMX20_03464 - Outer membrane protein assembly factor BamD, at 3,655,932 to 3,656,669
_03464
MPMX20_03465: MPMX20_03465 - Ribosome-associated inhibitor A, at 3,656,937 to 3,657,278
_03465
MPMX20_03466: MPMX20_03466 - Bifunctional chorismate mutase/prephenate dehydratase, at 3,657,537 to 3,658,697
_03466
Position (kb)
3656
3657
3658 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3656.597 kb on + strand at 3656.629 kb on - strand at 3656.629 kb on - strand at 3656.740 kb on + strand at 3656.757 kb on - strand at 3656.807 kb on + strand at 3656.963 kb on + strand at 3657.049 kb on + strand, within MPMX20_03465 at 3657.052 kb on - strand, within MPMX20_03465 at 3657.066 kb on - strand, within MPMX20_03465 at 3657.067 kb on - strand, within MPMX20_03465 at 3657.075 kb on + strand, within MPMX20_03465 at 3657.101 kb on - strand, within MPMX20_03465 at 3657.203 kb on + strand, within MPMX20_03465 at 3657.218 kb on - strand, within MPMX20_03465 at 3657.218 kb on - strand, within MPMX20_03465 at 3657.218 kb on - strand, within MPMX20_03465 at 3657.251 kb on - strand at 3657.342 kb on + strand at 3657.353 kb on + strand at 3657.403 kb on - strand at 3657.424 kb on + strand at 3657.473 kb on + strand at 3657.481 kb on - strand at 3657.481 kb on - strand at 3657.481 kb on - strand at 3657.521 kb on + strand at 3657.528 kb on + strand at 3657.533 kb on + strand at 3657.551 kb on + strand at 3657.551 kb on + strand at 3657.564 kb on - strand at 3657.570 kb on + strand at 3657.616 kb on - strand at 3657.616 kb on - strand at 3657.619 kb on - strand at 3657.669 kb on - strand, within MPMX20_03466 at 3657.680 kb on - strand, within MPMX20_03466 at 3657.709 kb on + strand, within MPMX20_03466 at 3657.797 kb on - strand, within MPMX20_03466 at 3657.802 kb on - strand, within MPMX20_03466 at 3657.844 kb on + strand, within MPMX20_03466 at 3657.849 kb on + strand, within MPMX20_03466 at 3657.895 kb on - strand, within MPMX20_03466 at 3657.899 kb on + strand, within MPMX20_03466 at 3657.907 kb on - strand, within MPMX20_03466 at 3657.925 kb on + strand, within MPMX20_03466 at 3657.986 kb on + strand, within MPMX20_03466 at 3658.021 kb on + strand, within MPMX20_03466 at 3658.021 kb on + strand, within MPMX20_03466 at 3658.058 kb on + strand, within MPMX20_03466 at 3658.060 kb on + strand, within MPMX20_03466 at 3658.066 kb on - strand, within MPMX20_03466 at 3658.068 kb on - strand, within MPMX20_03466 at 3658.123 kb on - strand, within MPMX20_03466 at 3658.126 kb on + strand, within MPMX20_03466 at 3658.152 kb on + strand, within MPMX20_03466 at 3658.160 kb on - strand, within MPMX20_03466 at 3658.160 kb on - strand, within MPMX20_03466 at 3658.160 kb on - strand, within MPMX20_03466 at 3658.160 kb on - strand, within MPMX20_03466 at 3658.171 kb on + strand, within MPMX20_03466 at 3658.178 kb on + strand, within MPMX20_03466 at 3658.181 kb on + strand, within MPMX20_03466 at 3658.245 kb on - strand, within MPMX20_03466 at 3658.245 kb on - strand, within MPMX20_03466
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 3,656,597 + -0.4 3,656,629 - +0.2 3,656,629 - +1.3 3,656,740 + -0.7 3,656,757 - -1.0 3,656,807 + +0.3 3,656,963 + +0.9 3,657,049 + MPMX20_03465 0.33 +0.2 3,657,052 - MPMX20_03465 0.34 -3.4 3,657,066 - MPMX20_03465 0.38 -1.8 3,657,067 - MPMX20_03465 0.38 -0.8 3,657,075 + MPMX20_03465 0.40 +1.2 3,657,101 - MPMX20_03465 0.48 +1.3 3,657,203 + MPMX20_03465 0.78 +2.9 3,657,218 - MPMX20_03465 0.82 +0.4 3,657,218 - MPMX20_03465 0.82 +0.2 3,657,218 - MPMX20_03465 0.82 +2.7 3,657,251 - -2.1 3,657,342 + -2.2 3,657,353 + +0.2 3,657,403 - +1.5 3,657,424 + -3.4 3,657,473 + +0.7 3,657,481 - +1.1 3,657,481 - +0.3 3,657,481 - +1.3 3,657,521 + +0.6 3,657,528 + -1.3 3,657,533 + +2.5 3,657,551 + +1.4 3,657,551 + -1.6 3,657,564 - +2.0 3,657,570 + +4.3 3,657,616 - +1.6 3,657,616 - +0.2 3,657,619 - -2.5 3,657,669 - MPMX20_03466 0.11 +2.3 3,657,680 - MPMX20_03466 0.12 -0.1 3,657,709 + MPMX20_03466 0.15 -3.4 3,657,797 - MPMX20_03466 0.22 -0.4 3,657,802 - MPMX20_03466 0.23 +1.1 3,657,844 + MPMX20_03466 0.26 +0.5 3,657,849 + MPMX20_03466 0.27 +1.0 3,657,895 - MPMX20_03466 0.31 +1.6 3,657,899 + MPMX20_03466 0.31 +1.4 3,657,907 - MPMX20_03466 0.32 +1.0 3,657,925 + MPMX20_03466 0.33 +0.2 3,657,986 + MPMX20_03466 0.39 -0.7 3,658,021 + MPMX20_03466 0.42 -1.6 3,658,021 + MPMX20_03466 0.42 -1.9 3,658,058 + MPMX20_03466 0.45 +1.0 3,658,060 + MPMX20_03466 0.45 -0.8 3,658,066 - MPMX20_03466 0.46 -1.8 3,658,068 - MPMX20_03466 0.46 -2.9 3,658,123 - MPMX20_03466 0.50 -1.8 3,658,126 + MPMX20_03466 0.51 -0.3 3,658,152 + MPMX20_03466 0.53 -0.2 3,658,160 - MPMX20_03466 0.54 -2.6 3,658,160 - MPMX20_03466 0.54 +0.2 3,658,160 - MPMX20_03466 0.54 -2.5 3,658,160 - MPMX20_03466 0.54 -3.3 3,658,171 + MPMX20_03466 0.55 +2.1 3,658,178 + MPMX20_03466 0.55 -2.0 3,658,181 + MPMX20_03466 0.55 -0.2 3,658,245 - MPMX20_03466 0.61 +2.1 3,658,245 - MPMX20_03466 0.61 +1.8
Or see this region's nucleotide sequence