Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03359 and MPMX20_03360 overlap by 4 nucleotides MPMX20_03360 and MPMX20_03361 are separated by 97 nucleotides MPMX20_03361 and MPMX20_03362 are separated by 111 nucleotides MPMX20_03362 and MPMX20_03363 are separated by 11 nucleotides
MPMX20_03359: MPMX20_03359 - Protein YfgG, at 3,536,562 to 3,536,732
_03359
MPMX20_03360: MPMX20_03360 - HTH-type transcriptional regulator CysL, at 3,536,729 to 3,537,619
_03360
MPMX20_03361: MPMX20_03361 - hypothetical protein, at 3,537,717 to 3,538,910
_03361
MPMX20_03362: MPMX20_03362 - hypothetical protein, at 3,539,022 to 3,539,489
_03362
MPMX20_03363: MPMX20_03363 - hypothetical protein, at 3,539,501 to 3,540,244
_03363
Position (kb)
3537
3538
3539 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 3536.795 kb on - strand at 3536.800 kb on - strand at 3536.849 kb on + strand, within MPMX20_03360 at 3536.868 kb on + strand, within MPMX20_03360 at 3536.876 kb on - strand, within MPMX20_03360 at 3536.876 kb on - strand, within MPMX20_03360 at 3536.891 kb on + strand, within MPMX20_03360 at 3536.919 kb on - strand, within MPMX20_03360 at 3536.938 kb on + strand, within MPMX20_03360 at 3536.946 kb on - strand, within MPMX20_03360 at 3536.946 kb on - strand, within MPMX20_03360 at 3537.084 kb on - strand, within MPMX20_03360 at 3537.144 kb on - strand, within MPMX20_03360 at 3537.151 kb on + strand, within MPMX20_03360 at 3537.171 kb on - strand, within MPMX20_03360 at 3537.179 kb on + strand, within MPMX20_03360 at 3537.267 kb on + strand, within MPMX20_03360 at 3537.490 kb on + strand, within MPMX20_03360 at 3537.531 kb on - strand at 3537.589 kb on + strand at 3537.599 kb on + strand at 3537.629 kb on + strand at 3537.637 kb on - strand at 3537.684 kb on + strand at 3537.684 kb on + strand at 3537.692 kb on - strand at 3537.692 kb on - strand at 3537.742 kb on + strand at 3537.742 kb on + strand at 3537.750 kb on - strand at 3537.800 kb on + strand at 3537.801 kb on + strand at 3537.808 kb on + strand at 3537.849 kb on + strand, within MPMX20_03361 at 3537.854 kb on + strand, within MPMX20_03361 at 3537.854 kb on + strand, within MPMX20_03361 at 3537.862 kb on - strand, within MPMX20_03361 at 3537.862 kb on - strand, within MPMX20_03361 at 3537.904 kb on - strand, within MPMX20_03361 at 3537.980 kb on - strand, within MPMX20_03361 at 3537.980 kb on - strand, within MPMX20_03361 at 3538.016 kb on - strand, within MPMX20_03361 at 3538.067 kb on - strand, within MPMX20_03361 at 3538.074 kb on - strand, within MPMX20_03361 at 3538.082 kb on - strand, within MPMX20_03361 at 3538.117 kb on + strand, within MPMX20_03361 at 3538.130 kb on + strand, within MPMX20_03361 at 3538.177 kb on + strand, within MPMX20_03361 at 3538.183 kb on - strand, within MPMX20_03361 at 3538.185 kb on - strand, within MPMX20_03361 at 3538.185 kb on - strand, within MPMX20_03361 at 3538.223 kb on - strand, within MPMX20_03361 at 3538.228 kb on - strand, within MPMX20_03361 at 3538.231 kb on + strand, within MPMX20_03361 at 3538.241 kb on + strand, within MPMX20_03361 at 3538.241 kb on + strand, within MPMX20_03361 at 3538.249 kb on - strand, within MPMX20_03361 at 3538.318 kb on + strand, within MPMX20_03361 at 3538.417 kb on + strand, within MPMX20_03361 at 3538.440 kb on + strand, within MPMX20_03361 at 3538.485 kb on - strand, within MPMX20_03361 at 3538.501 kb on + strand, within MPMX20_03361 at 3538.501 kb on + strand, within MPMX20_03361 at 3538.524 kb on - strand, within MPMX20_03361 at 3538.553 kb on - strand, within MPMX20_03361 at 3538.571 kb on - strand, within MPMX20_03361 at 3538.571 kb on - strand, within MPMX20_03361 at 3538.571 kb on - strand, within MPMX20_03361 at 3538.613 kb on - strand, within MPMX20_03361 at 3538.618 kb on - strand, within MPMX20_03361 at 3538.707 kb on - strand, within MPMX20_03361 at 3538.724 kb on + strand, within MPMX20_03361 at 3538.724 kb on + strand, within MPMX20_03361 at 3538.724 kb on + strand, within MPMX20_03361 at 3538.724 kb on + strand, within MPMX20_03361 at 3538.724 kb on + strand, within MPMX20_03361 at 3538.724 kb on + strand, within MPMX20_03361 at 3538.732 kb on - strand, within MPMX20_03361 at 3538.732 kb on - strand, within MPMX20_03361 at 3538.732 kb on - strand, within MPMX20_03361 at 3538.732 kb on - strand, within MPMX20_03361 at 3538.732 kb on - strand, within MPMX20_03361 at 3538.732 kb on - strand, within MPMX20_03361 at 3538.732 kb on - strand, within MPMX20_03361 at 3538.732 kb on - strand, within MPMX20_03361 at 3538.796 kb on + strand at 3538.842 kb on + strand at 3538.852 kb on + strand at 3538.880 kb on - strand at 3538.895 kb on - strand at 3538.907 kb on - strand at 3538.942 kb on + strand at 3539.017 kb on + strand at 3539.055 kb on + strand at 3539.088 kb on - strand, within MPMX20_03362 at 3539.093 kb on + strand, within MPMX20_03362 at 3539.107 kb on - strand, within MPMX20_03362 at 3539.107 kb on - strand, within MPMX20_03362 at 3539.149 kb on + strand, within MPMX20_03362 at 3539.157 kb on - strand, within MPMX20_03362 at 3539.201 kb on + strand, within MPMX20_03362 at 3539.209 kb on - strand, within MPMX20_03362 at 3539.209 kb on - strand, within MPMX20_03362 at 3539.228 kb on - strand, within MPMX20_03362 at 3539.233 kb on + strand, within MPMX20_03362 at 3539.233 kb on + strand, within MPMX20_03362 at 3539.300 kb on + strand, within MPMX20_03362 at 3539.308 kb on - strand, within MPMX20_03362 at 3539.325 kb on + strand, within MPMX20_03362 at 3539.325 kb on + strand, within MPMX20_03362 at 3539.325 kb on + strand, within MPMX20_03362 at 3539.325 kb on + strand, within MPMX20_03362 at 3539.378 kb on - strand, within MPMX20_03362 at 3539.387 kb on + strand, within MPMX20_03362 at 3539.420 kb on + strand, within MPMX20_03362 at 3539.519 kb on - strand at 3539.519 kb on - strand at 3539.524 kb on - strand at 3539.744 kb on - strand, within MPMX20_03363 at 3539.797 kb on - strand, within MPMX20_03363 at 3539.803 kb on + strand, within MPMX20_03363 at 3539.872 kb on + strand, within MPMX20_03363 at 3539.874 kb on - strand, within MPMX20_03363 at 3539.882 kb on + strand, within MPMX20_03363
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 3,536,795 - +2.4 3,536,800 - +0.1 3,536,849 + MPMX20_03360 0.13 -0.9 3,536,868 + MPMX20_03360 0.16 +1.0 3,536,876 - MPMX20_03360 0.16 -2.0 3,536,876 - MPMX20_03360 0.16 +2.9 3,536,891 + MPMX20_03360 0.18 -0.7 3,536,919 - MPMX20_03360 0.21 +1.3 3,536,938 + MPMX20_03360 0.23 -0.9 3,536,946 - MPMX20_03360 0.24 +2.2 3,536,946 - MPMX20_03360 0.24 -0.4 3,537,084 - MPMX20_03360 0.40 -3.7 3,537,144 - MPMX20_03360 0.47 -0.6 3,537,151 + MPMX20_03360 0.47 -0.4 3,537,171 - MPMX20_03360 0.50 -3.0 3,537,179 + MPMX20_03360 0.51 -0.2 3,537,267 + MPMX20_03360 0.60 +1.0 3,537,490 + MPMX20_03360 0.85 -1.9 3,537,531 - +3.4 3,537,589 + -0.2 3,537,599 + -1.1 3,537,629 + -1.9 3,537,637 - +0.2 3,537,684 + -2.2 3,537,684 + -0.6 3,537,692 - -1.0 3,537,692 - -2.8 3,537,742 + -0.9 3,537,742 + +2.7 3,537,750 - -1.3 3,537,800 + -2.5 3,537,801 + -0.6 3,537,808 + -0.4 3,537,849 + MPMX20_03361 0.11 -0.5 3,537,854 + MPMX20_03361 0.11 -0.9 3,537,854 + MPMX20_03361 0.11 -2.3 3,537,862 - MPMX20_03361 0.12 +3.1 3,537,862 - MPMX20_03361 0.12 -2.1 3,537,904 - MPMX20_03361 0.16 -0.2 3,537,980 - MPMX20_03361 0.22 -0.0 3,537,980 - MPMX20_03361 0.22 -3.3 3,538,016 - MPMX20_03361 0.25 +1.9 3,538,067 - MPMX20_03361 0.29 -1.2 3,538,074 - MPMX20_03361 0.30 +0.6 3,538,082 - MPMX20_03361 0.31 -2.0 3,538,117 + MPMX20_03361 0.34 +2.1 3,538,130 + MPMX20_03361 0.35 -0.5 3,538,177 + MPMX20_03361 0.39 +1.0 3,538,183 - MPMX20_03361 0.39 -1.3 3,538,185 - MPMX20_03361 0.39 -1.3 3,538,185 - MPMX20_03361 0.39 -0.8 3,538,223 - MPMX20_03361 0.42 +2.1 3,538,228 - MPMX20_03361 0.43 +1.5 3,538,231 + MPMX20_03361 0.43 -2.9 3,538,241 + MPMX20_03361 0.44 -3.7 3,538,241 + MPMX20_03361 0.44 +0.5 3,538,249 - MPMX20_03361 0.45 +0.0 3,538,318 + MPMX20_03361 0.50 -3.3 3,538,417 + MPMX20_03361 0.59 +0.5 3,538,440 + MPMX20_03361 0.61 -0.2 3,538,485 - MPMX20_03361 0.64 -4.2 3,538,501 + MPMX20_03361 0.66 +2.6 3,538,501 + MPMX20_03361 0.66 -1.0 3,538,524 - MPMX20_03361 0.68 -3.4 3,538,553 - MPMX20_03361 0.70 +1.0 3,538,571 - MPMX20_03361 0.72 +1.8 3,538,571 - MPMX20_03361 0.72 -0.6 3,538,571 - MPMX20_03361 0.72 +2.8 3,538,613 - MPMX20_03361 0.75 -1.6 3,538,618 - MPMX20_03361 0.75 +2.7 3,538,707 - MPMX20_03361 0.83 +2.0 3,538,724 + MPMX20_03361 0.84 -0.4 3,538,724 + MPMX20_03361 0.84 +0.0 3,538,724 + MPMX20_03361 0.84 -3.1 3,538,724 + MPMX20_03361 0.84 +1.4 3,538,724 + MPMX20_03361 0.84 +4.4 3,538,724 + MPMX20_03361 0.84 +0.8 3,538,732 - MPMX20_03361 0.85 +1.3 3,538,732 - MPMX20_03361 0.85 -1.5 3,538,732 - MPMX20_03361 0.85 -2.6 3,538,732 - MPMX20_03361 0.85 +2.0 3,538,732 - MPMX20_03361 0.85 +2.3 3,538,732 - MPMX20_03361 0.85 +0.3 3,538,732 - MPMX20_03361 0.85 +1.2 3,538,732 - MPMX20_03361 0.85 +0.4 3,538,796 + +0.3 3,538,842 + -3.8 3,538,852 + +0.6 3,538,880 - -0.4 3,538,895 - +0.0 3,538,907 - -1.9 3,538,942 + -2.1 3,539,017 + -1.6 3,539,055 + +1.0 3,539,088 - MPMX20_03362 0.14 -0.7 3,539,093 + MPMX20_03362 0.15 +1.4 3,539,107 - MPMX20_03362 0.18 +3.1 3,539,107 - MPMX20_03362 0.18 +0.6 3,539,149 + MPMX20_03362 0.27 +0.6 3,539,157 - MPMX20_03362 0.29 +0.0 3,539,201 + MPMX20_03362 0.38 +1.7 3,539,209 - MPMX20_03362 0.40 -1.7 3,539,209 - MPMX20_03362 0.40 -0.0 3,539,228 - MPMX20_03362 0.44 -2.8 3,539,233 + MPMX20_03362 0.45 -3.3 3,539,233 + MPMX20_03362 0.45 +0.1 3,539,300 + MPMX20_03362 0.59 +1.4 3,539,308 - MPMX20_03362 0.61 -2.1 3,539,325 + MPMX20_03362 0.65 -0.6 3,539,325 + MPMX20_03362 0.65 -2.8 3,539,325 + MPMX20_03362 0.65 +0.0 3,539,325 + MPMX20_03362 0.65 +0.0 3,539,378 - MPMX20_03362 0.76 +0.8 3,539,387 + MPMX20_03362 0.78 +0.3 3,539,420 + MPMX20_03362 0.85 -3.8 3,539,519 - -1.5 3,539,519 - -2.6 3,539,524 - -3.1 3,539,744 - MPMX20_03363 0.33 -2.9 3,539,797 - MPMX20_03363 0.40 -0.4 3,539,803 + MPMX20_03363 0.41 +1.0 3,539,872 + MPMX20_03363 0.50 -0.6 3,539,874 - MPMX20_03363 0.50 -0.5 3,539,882 + MPMX20_03363 0.51 +2.3
Or see this region's nucleotide sequence