Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03284 and MPMX20_03285 are separated by 127 nucleotides MPMX20_03285 and MPMX20_03286 are separated by 61 nucleotides MPMX20_03286 and MPMX20_03287 are separated by 350 nucleotides
MPMX20_03284: MPMX20_03284 - L-glyceraldehyde 3-phosphate reductase, at 3,456,997 to 3,457,995
_03284
MPMX20_03285: MPMX20_03285 - hypothetical protein, at 3,458,123 to 3,458,470
_03285
MPMX20_03286: MPMX20_03286 - Divalent metal cation transporter MntH, at 3,458,532 to 3,459,770
_03286
MPMX20_03287: MPMX20_03287 - Nucleoside permease NupC, at 3,460,121 to 3,461,308
_03287
Position (kb)
3458
3459
3460 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 3457.548 kb on + strand, within MPMX20_03284 at 3457.590 kb on + strand, within MPMX20_03284 at 3457.598 kb on - strand, within MPMX20_03284 at 3457.748 kb on + strand, within MPMX20_03284 at 3457.748 kb on + strand, within MPMX20_03284 at 3457.850 kb on - strand, within MPMX20_03284 at 3457.871 kb on + strand, within MPMX20_03284 at 3457.871 kb on + strand, within MPMX20_03284 at 3457.881 kb on + strand, within MPMX20_03284 at 3457.975 kb on + strand at 3457.975 kb on + strand at 3457.983 kb on - strand at 3457.985 kb on + strand at 3457.985 kb on + strand at 3458.119 kb on + strand at 3458.385 kb on - strand, within MPMX20_03285 at 3458.441 kb on + strand at 3458.450 kb on + strand at 3458.538 kb on + strand at 3458.543 kb on + strand at 3458.546 kb on - strand at 3458.546 kb on - strand at 3458.546 kb on - strand at 3458.548 kb on + strand at 3458.625 kb on + strand at 3458.625 kb on + strand at 3458.625 kb on + strand at 3458.625 kb on + strand at 3458.689 kb on - strand, within MPMX20_03286 at 3458.739 kb on + strand, within MPMX20_03286 at 3458.794 kb on + strand, within MPMX20_03286 at 3458.824 kb on - strand, within MPMX20_03286 at 3458.861 kb on - strand, within MPMX20_03286 at 3458.869 kb on - strand, within MPMX20_03286 at 3458.936 kb on + strand, within MPMX20_03286 at 3458.941 kb on + strand, within MPMX20_03286 at 3458.943 kb on - strand, within MPMX20_03286 at 3459.010 kb on + strand, within MPMX20_03286 at 3459.091 kb on - strand, within MPMX20_03286 at 3459.159 kb on - strand, within MPMX20_03286 at 3459.193 kb on + strand, within MPMX20_03286 at 3459.193 kb on - strand, within MPMX20_03286 at 3459.193 kb on - strand, within MPMX20_03286 at 3459.273 kb on - strand, within MPMX20_03286 at 3459.273 kb on - strand, within MPMX20_03286 at 3459.364 kb on + strand, within MPMX20_03286 at 3459.379 kb on + strand, within MPMX20_03286 at 3459.387 kb on - strand, within MPMX20_03286 at 3459.397 kb on - strand, within MPMX20_03286 at 3459.486 kb on - strand, within MPMX20_03286 at 3459.550 kb on - strand, within MPMX20_03286 at 3459.574 kb on - strand, within MPMX20_03286 at 3459.590 kb on + strand, within MPMX20_03286 at 3459.607 kb on + strand, within MPMX20_03286 at 3459.608 kb on + strand, within MPMX20_03286 at 3459.615 kb on - strand, within MPMX20_03286 at 3459.700 kb on + strand at 3459.733 kb on + strand at 3459.741 kb on - strand at 3459.742 kb on + strand at 3459.742 kb on + strand at 3459.744 kb on + strand at 3459.750 kb on - strand at 3459.752 kb on - strand at 3459.801 kb on + strand at 3459.801 kb on + strand at 3459.809 kb on - strand at 3459.877 kb on - strand at 3460.034 kb on - strand at 3460.047 kb on - strand at 3460.126 kb on - strand at 3460.126 kb on - strand at 3460.126 kb on - strand at 3460.126 kb on - strand at 3460.158 kb on + strand at 3460.188 kb on - strand at 3460.193 kb on - strand at 3460.297 kb on - strand, within MPMX20_03287 at 3460.329 kb on - strand, within MPMX20_03287 at 3460.376 kb on + strand, within MPMX20_03287 at 3460.384 kb on - strand, within MPMX20_03287 at 3460.430 kb on - strand, within MPMX20_03287 at 3460.430 kb on - strand, within MPMX20_03287 at 3460.440 kb on - strand, within MPMX20_03287 at 3460.457 kb on - strand, within MPMX20_03287 at 3460.503 kb on - strand, within MPMX20_03287 at 3460.545 kb on + strand, within MPMX20_03287 at 3460.550 kb on - strand, within MPMX20_03287 at 3460.570 kb on + strand, within MPMX20_03287 at 3460.621 kb on + strand, within MPMX20_03287 at 3460.679 kb on - strand, within MPMX20_03287 at 3460.715 kb on + strand, within MPMX20_03287 at 3460.723 kb on - strand, within MPMX20_03287 at 3460.723 kb on - strand, within MPMX20_03287 at 3460.726 kb on + strand, within MPMX20_03287 at 3460.734 kb on - strand, within MPMX20_03287 at 3460.761 kb on - strand, within MPMX20_03287
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 3,457,548 + MPMX20_03284 0.55 -0.1 3,457,590 + MPMX20_03284 0.59 -2.3 3,457,598 - MPMX20_03284 0.60 -0.6 3,457,748 + MPMX20_03284 0.75 -2.7 3,457,748 + MPMX20_03284 0.75 -3.1 3,457,850 - MPMX20_03284 0.85 +0.5 3,457,871 + MPMX20_03284 0.87 -0.7 3,457,871 + MPMX20_03284 0.87 -3.1 3,457,881 + MPMX20_03284 0.88 -2.5 3,457,975 + -1.0 3,457,975 + +3.4 3,457,983 - -3.3 3,457,985 + -2.8 3,457,985 + -3.1 3,458,119 + +4.3 3,458,385 - MPMX20_03285 0.75 +1.2 3,458,441 + +0.9 3,458,450 + -2.3 3,458,538 + +0.1 3,458,543 + -2.7 3,458,546 - +0.9 3,458,546 - +2.6 3,458,546 - +0.9 3,458,548 + +2.0 3,458,625 + -3.4 3,458,625 + -3.7 3,458,625 + -0.6 3,458,625 + +2.1 3,458,689 - MPMX20_03286 0.13 +1.5 3,458,739 + MPMX20_03286 0.17 +1.3 3,458,794 + MPMX20_03286 0.21 -2.8 3,458,824 - MPMX20_03286 0.24 -3.6 3,458,861 - MPMX20_03286 0.27 +1.6 3,458,869 - MPMX20_03286 0.27 +2.0 3,458,936 + MPMX20_03286 0.33 +2.8 3,458,941 + MPMX20_03286 0.33 -2.1 3,458,943 - MPMX20_03286 0.33 -2.7 3,459,010 + MPMX20_03286 0.39 +0.9 3,459,091 - MPMX20_03286 0.45 +3.7 3,459,159 - MPMX20_03286 0.51 +1.7 3,459,193 + MPMX20_03286 0.53 -0.5 3,459,193 - MPMX20_03286 0.53 +0.5 3,459,193 - MPMX20_03286 0.53 +3.6 3,459,273 - MPMX20_03286 0.60 +1.1 3,459,273 - MPMX20_03286 0.60 +1.5 3,459,364 + MPMX20_03286 0.67 +0.9 3,459,379 + MPMX20_03286 0.68 -1.7 3,459,387 - MPMX20_03286 0.69 -3.0 3,459,397 - MPMX20_03286 0.70 -3.1 3,459,486 - MPMX20_03286 0.77 +1.9 3,459,550 - MPMX20_03286 0.82 -3.3 3,459,574 - MPMX20_03286 0.84 -2.3 3,459,590 + MPMX20_03286 0.85 -1.2 3,459,607 + MPMX20_03286 0.87 -0.5 3,459,608 + MPMX20_03286 0.87 -4.0 3,459,615 - MPMX20_03286 0.87 +1.5 3,459,700 + -1.5 3,459,733 + -0.1 3,459,741 - -2.4 3,459,742 + -0.5 3,459,742 + -1.7 3,459,744 + +1.2 3,459,750 - +1.7 3,459,752 - -1.3 3,459,801 + -2.2 3,459,801 + -2.3 3,459,809 - -2.2 3,459,877 - -3.0 3,460,034 - -2.1 3,460,047 - -2.2 3,460,126 - +2.9 3,460,126 - +1.6 3,460,126 - +3.2 3,460,126 - -1.7 3,460,158 + -2.3 3,460,188 - +0.6 3,460,193 - -1.6 3,460,297 - MPMX20_03287 0.15 +1.3 3,460,329 - MPMX20_03287 0.18 -1.8 3,460,376 + MPMX20_03287 0.21 -2.8 3,460,384 - MPMX20_03287 0.22 +1.8 3,460,430 - MPMX20_03287 0.26 -2.2 3,460,430 - MPMX20_03287 0.26 -3.6 3,460,440 - MPMX20_03287 0.27 +1.4 3,460,457 - MPMX20_03287 0.28 -1.1 3,460,503 - MPMX20_03287 0.32 +0.1 3,460,545 + MPMX20_03287 0.36 +1.8 3,460,550 - MPMX20_03287 0.36 -0.9 3,460,570 + MPMX20_03287 0.38 +0.2 3,460,621 + MPMX20_03287 0.42 -1.8 3,460,679 - MPMX20_03287 0.47 -2.2 3,460,715 + MPMX20_03287 0.50 -0.1 3,460,723 - MPMX20_03287 0.51 -1.3 3,460,723 - MPMX20_03287 0.51 +1.1 3,460,726 + MPMX20_03287 0.51 -0.3 3,460,734 - MPMX20_03287 0.52 +0.9 3,460,761 - MPMX20_03287 0.54 -0.7
Or see this region's nucleotide sequence