Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03260

Experiment: octanoate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_03259 and MPMX20_03260 are separated by 50 nucleotidesMPMX20_03260 and MPMX20_03261 are separated by 13 nucleotidesMPMX20_03261 and MPMX20_03262 overlap by 1 nucleotides MPMX20_03259: MPMX20_03259 - tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC, at 3,429,765 to 3,431,762 _03259 MPMX20_03260: MPMX20_03260 - hypothetical protein, at 3,431,813 to 3,432,091 _03260 MPMX20_03261: MPMX20_03261 - Elongation factor P hydroxylase, at 3,432,105 to 3,432,650 _03261 MPMX20_03262: MPMX20_03262 - putative membrane transporter protein YfcA, at 3,432,650 to 3,433,459 _03262 Position (kb) 3431 3432 3433Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 3430.816 kb on - strand, within MPMX20_03259at 3430.834 kb on - strand, within MPMX20_03259at 3430.839 kb on - strand, within MPMX20_03259at 3430.847 kb on + strand, within MPMX20_03259at 3431.022 kb on - strand, within MPMX20_03259at 3431.138 kb on + strand, within MPMX20_03259at 3431.146 kb on - strand, within MPMX20_03259at 3431.162 kb on + strand, within MPMX20_03259at 3431.173 kb on + strand, within MPMX20_03259at 3431.194 kb on - strand, within MPMX20_03259at 3431.207 kb on + strand, within MPMX20_03259at 3431.311 kb on - strand, within MPMX20_03259at 3431.311 kb on - strand, within MPMX20_03259at 3431.311 kb on - strand, within MPMX20_03259at 3431.395 kb on + strand, within MPMX20_03259at 3431.454 kb on + strand, within MPMX20_03259at 3431.462 kb on - strand, within MPMX20_03259at 3431.469 kb on + strand, within MPMX20_03259at 3431.631 kb on - strandat 3431.660 kb on + strandat 3431.668 kb on - strandat 3431.689 kb on + strandat 3431.689 kb on + strandat 3431.689 kb on + strandat 3431.735 kb on - strandat 3431.833 kb on + strandat 3431.882 kb on + strand, within MPMX20_03260at 3431.956 kb on - strand, within MPMX20_03260at 3431.969 kb on - strand, within MPMX20_03260at 3431.981 kb on - strand, within MPMX20_03260at 3432.035 kb on - strand, within MPMX20_03260at 3432.035 kb on - strand, within MPMX20_03260at 3432.144 kb on - strandat 3432.151 kb on - strandat 3432.285 kb on - strand, within MPMX20_03261at 3432.295 kb on - strand, within MPMX20_03261at 3432.431 kb on + strand, within MPMX20_03261at 3432.452 kb on + strand, within MPMX20_03261at 3432.452 kb on + strand, within MPMX20_03261at 3432.452 kb on + strand, within MPMX20_03261at 3432.452 kb on + strand, within MPMX20_03261at 3432.452 kb on + strand, within MPMX20_03261at 3432.452 kb on + strand, within MPMX20_03261at 3432.460 kb on - strand, within MPMX20_03261at 3432.460 kb on - strand, within MPMX20_03261at 3432.460 kb on - strand, within MPMX20_03261at 3432.462 kb on - strand, within MPMX20_03261at 3432.514 kb on + strand, within MPMX20_03261at 3432.565 kb on + strand, within MPMX20_03261at 3432.573 kb on - strand, within MPMX20_03261at 3432.656 kb on - strandat 3432.675 kb on - strandat 3432.676 kb on - strandat 3432.676 kb on - strandat 3432.690 kb on - strandat 3432.703 kb on + strandat 3432.713 kb on + strandat 3432.726 kb on - strandat 3432.962 kb on + strand, within MPMX20_03262at 3432.964 kb on - strand, within MPMX20_03262at 3433.058 kb on + strand, within MPMX20_03262at 3433.058 kb on + strand, within MPMX20_03262

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
remove
3,430,816 - MPMX20_03259 0.53 +0.5
3,430,834 - MPMX20_03259 0.54 -0.5
3,430,839 - MPMX20_03259 0.54 -0.5
3,430,847 + MPMX20_03259 0.54 -1.4
3,431,022 - MPMX20_03259 0.63 -2.0
3,431,138 + MPMX20_03259 0.69 +2.1
3,431,146 - MPMX20_03259 0.69 +2.6
3,431,162 + MPMX20_03259 0.70 -2.5
3,431,173 + MPMX20_03259 0.70 +2.9
3,431,194 - MPMX20_03259 0.72 +0.6
3,431,207 + MPMX20_03259 0.72 +1.7
3,431,311 - MPMX20_03259 0.77 -0.8
3,431,311 - MPMX20_03259 0.77 +0.5
3,431,311 - MPMX20_03259 0.77 -2.9
3,431,395 + MPMX20_03259 0.82 +1.8
3,431,454 + MPMX20_03259 0.85 -3.1
3,431,462 - MPMX20_03259 0.85 -1.0
3,431,469 + MPMX20_03259 0.85 +2.5
3,431,631 - +0.5
3,431,660 + +2.5
3,431,668 - +2.9
3,431,689 + -2.1
3,431,689 + +3.3
3,431,689 + +2.5
3,431,735 - -1.9
3,431,833 + +1.6
3,431,882 + MPMX20_03260 0.25 -2.8
3,431,956 - MPMX20_03260 0.51 -0.3
3,431,969 - MPMX20_03260 0.56 +2.5
3,431,981 - MPMX20_03260 0.60 +3.7
3,432,035 - MPMX20_03260 0.80 +1.5
3,432,035 - MPMX20_03260 0.80 -1.6
3,432,144 - +2.1
3,432,151 - -2.9
3,432,285 - MPMX20_03261 0.33 +1.5
3,432,295 - MPMX20_03261 0.35 +0.9
3,432,431 + MPMX20_03261 0.60 -3.1
3,432,452 + MPMX20_03261 0.64 -1.4
3,432,452 + MPMX20_03261 0.64 +0.9
3,432,452 + MPMX20_03261 0.64 -1.8
3,432,452 + MPMX20_03261 0.64 -1.0
3,432,452 + MPMX20_03261 0.64 -3.8
3,432,452 + MPMX20_03261 0.64 +1.5
3,432,460 - MPMX20_03261 0.65 -1.3
3,432,460 - MPMX20_03261 0.65 -3.0
3,432,460 - MPMX20_03261 0.65 -1.9
3,432,462 - MPMX20_03261 0.65 +1.4
3,432,514 + MPMX20_03261 0.75 -0.1
3,432,565 + MPMX20_03261 0.84 -2.5
3,432,573 - MPMX20_03261 0.86 +0.0
3,432,656 - +0.9
3,432,675 - -2.9
3,432,676 - -1.7
3,432,676 - -2.2
3,432,690 - -5.1
3,432,703 + -2.8
3,432,713 + -0.4
3,432,726 - -1.5
3,432,962 + MPMX20_03262 0.39 +0.3
3,432,964 - MPMX20_03262 0.39 -2.3
3,433,058 + MPMX20_03262 0.50 +0.9
3,433,058 + MPMX20_03262 0.50 -1.7

Or see this region's nucleotide sequence