Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03138

Experiment: octanoate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_03137 and MPMX20_03138 are separated by 204 nucleotidesMPMX20_03138 and MPMX20_03139 are separated by 123 nucleotides MPMX20_03137: MPMX20_03137 - Mannonate dehydratase, at 3,296,392 to 3,297,582 _03137 MPMX20_03138: MPMX20_03138 - Polyol:NADP oxidoreductase, at 3,297,787 to 3,299,253 _03138 MPMX20_03139: MPMX20_03139 - Zinc-binding GTPase YeiR, at 3,299,377 to 3,300,363 _03139 Position (kb) 3297 3298 3299 3300Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3296.854 kb on + strand, within MPMX20_03137at 3296.862 kb on - strand, within MPMX20_03137at 3296.920 kb on + strand, within MPMX20_03137at 3296.930 kb on - strand, within MPMX20_03137at 3297.015 kb on + strand, within MPMX20_03137at 3297.017 kb on - strand, within MPMX20_03137at 3297.027 kb on + strand, within MPMX20_03137at 3297.027 kb on + strand, within MPMX20_03137at 3297.035 kb on - strand, within MPMX20_03137at 3297.045 kb on - strand, within MPMX20_03137at 3297.092 kb on + strand, within MPMX20_03137at 3297.092 kb on + strand, within MPMX20_03137at 3297.210 kb on + strand, within MPMX20_03137at 3297.218 kb on - strand, within MPMX20_03137at 3297.266 kb on + strand, within MPMX20_03137at 3297.324 kb on + strand, within MPMX20_03137at 3297.404 kb on + strand, within MPMX20_03137at 3297.404 kb on + strand, within MPMX20_03137at 3297.407 kb on - strand, within MPMX20_03137at 3297.412 kb on - strand, within MPMX20_03137at 3297.417 kb on - strand, within MPMX20_03137at 3297.442 kb on + strand, within MPMX20_03137at 3297.461 kb on + strand, within MPMX20_03137at 3297.462 kb on + strand, within MPMX20_03137at 3297.469 kb on - strandat 3297.484 kb on - strandat 3297.520 kb on - strandat 3297.566 kb on + strandat 3297.566 kb on + strandat 3297.566 kb on + strandat 3297.574 kb on - strandat 3297.574 kb on - strandat 3297.598 kb on - strandat 3297.661 kb on + strandat 3297.664 kb on - strandat 3297.740 kb on + strandat 3297.823 kb on + strandat 3297.850 kb on + strandat 3297.901 kb on + strandat 3297.901 kb on + strandat 3297.901 kb on + strandat 3297.909 kb on - strandat 3297.920 kb on + strandat 3297.970 kb on - strand, within MPMX20_03138at 3297.985 kb on + strand, within MPMX20_03138at 3298.017 kb on + strand, within MPMX20_03138at 3298.045 kb on + strand, within MPMX20_03138at 3298.053 kb on - strand, within MPMX20_03138at 3298.148 kb on + strand, within MPMX20_03138at 3298.161 kb on + strand, within MPMX20_03138at 3298.171 kb on - strand, within MPMX20_03138at 3298.171 kb on - strand, within MPMX20_03138at 3298.171 kb on - strand, within MPMX20_03138at 3298.229 kb on - strand, within MPMX20_03138at 3298.255 kb on + strand, within MPMX20_03138at 3298.322 kb on + strand, within MPMX20_03138at 3298.369 kb on - strand, within MPMX20_03138at 3298.381 kb on + strand, within MPMX20_03138at 3298.414 kb on - strand, within MPMX20_03138at 3298.435 kb on + strand, within MPMX20_03138at 3298.443 kb on - strand, within MPMX20_03138at 3298.452 kb on + strand, within MPMX20_03138at 3298.452 kb on + strand, within MPMX20_03138at 3298.452 kb on + strand, within MPMX20_03138at 3298.552 kb on - strand, within MPMX20_03138at 3298.668 kb on + strand, within MPMX20_03138at 3298.736 kb on + strand, within MPMX20_03138at 3298.744 kb on - strand, within MPMX20_03138at 3298.772 kb on + strand, within MPMX20_03138at 3298.772 kb on + strand, within MPMX20_03138at 3298.772 kb on + strand, within MPMX20_03138at 3298.772 kb on + strand, within MPMX20_03138at 3298.791 kb on + strand, within MPMX20_03138at 3298.794 kb on - strand, within MPMX20_03138at 3298.795 kb on + strand, within MPMX20_03138at 3298.801 kb on - strand, within MPMX20_03138at 3299.018 kb on + strand, within MPMX20_03138at 3299.026 kb on - strand, within MPMX20_03138at 3299.109 kb on + strandat 3299.131 kb on + strandat 3299.188 kb on - strandat 3299.264 kb on + strandat 3299.295 kb on + strandat 3299.308 kb on - strandat 3299.484 kb on - strand, within MPMX20_03139at 3299.532 kb on - strand, within MPMX20_03139at 3299.664 kb on - strand, within MPMX20_03139at 3299.750 kb on + strand, within MPMX20_03139at 3299.750 kb on + strand, within MPMX20_03139at 3299.859 kb on - strand, within MPMX20_03139at 3299.862 kb on + strand, within MPMX20_03139at 3299.864 kb on - strand, within MPMX20_03139at 3299.879 kb on - strand, within MPMX20_03139at 3299.884 kb on - strand, within MPMX20_03139at 3300.006 kb on - strand, within MPMX20_03139at 3300.031 kb on + strand, within MPMX20_03139at 3300.077 kb on - strand, within MPMX20_03139at 3300.077 kb on - strand, within MPMX20_03139at 3300.079 kb on + strand, within MPMX20_03139at 3300.156 kb on - strand, within MPMX20_03139at 3300.162 kb on + strand, within MPMX20_03139at 3300.170 kb on - strand, within MPMX20_03139at 3300.170 kb on - strand, within MPMX20_03139at 3300.186 kb on - strand, within MPMX20_03139at 3300.197 kb on + strand, within MPMX20_03139at 3300.206 kb on + strand, within MPMX20_03139at 3300.206 kb on + strand, within MPMX20_03139at 3300.206 kb on + strand, within MPMX20_03139at 3300.214 kb on - strand, within MPMX20_03139at 3300.214 kb on - strand, within MPMX20_03139

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
remove
3,296,854 + MPMX20_03137 0.39 +1.8
3,296,862 - MPMX20_03137 0.39 -2.5
3,296,920 + MPMX20_03137 0.44 -0.4
3,296,930 - MPMX20_03137 0.45 -0.6
3,297,015 + MPMX20_03137 0.52 +0.2
3,297,017 - MPMX20_03137 0.52 -1.6
3,297,027 + MPMX20_03137 0.53 +1.1
3,297,027 + MPMX20_03137 0.53 +1.5
3,297,035 - MPMX20_03137 0.54 +3.1
3,297,045 - MPMX20_03137 0.55 +0.9
3,297,092 + MPMX20_03137 0.59 -3.3
3,297,092 + MPMX20_03137 0.59 -1.9
3,297,210 + MPMX20_03137 0.69 -0.9
3,297,218 - MPMX20_03137 0.69 -0.9
3,297,266 + MPMX20_03137 0.73 +0.8
3,297,324 + MPMX20_03137 0.78 +1.5
3,297,404 + MPMX20_03137 0.85 -1.0
3,297,404 + MPMX20_03137 0.85 -2.0
3,297,407 - MPMX20_03137 0.85 -1.9
3,297,412 - MPMX20_03137 0.86 +1.0
3,297,417 - MPMX20_03137 0.86 -0.1
3,297,442 + MPMX20_03137 0.88 +0.8
3,297,461 + MPMX20_03137 0.90 +0.1
3,297,462 + MPMX20_03137 0.90 +1.2
3,297,469 - +1.4
3,297,484 - -3.1
3,297,520 - +3.1
3,297,566 + -3.5
3,297,566 + +1.8
3,297,566 + +1.4
3,297,574 - +0.7
3,297,574 - -1.9
3,297,598 - -4.1
3,297,661 + -0.8
3,297,664 - +0.2
3,297,740 + +1.6
3,297,823 + +2.0
3,297,850 + +1.4
3,297,901 + +0.2
3,297,901 + +2.1
3,297,901 + +1.4
3,297,909 - -3.0
3,297,920 + -1.7
3,297,970 - MPMX20_03138 0.12 +1.3
3,297,985 + MPMX20_03138 0.13 +0.6
3,298,017 + MPMX20_03138 0.16 -0.6
3,298,045 + MPMX20_03138 0.18 +0.6
3,298,053 - MPMX20_03138 0.18 +1.4
3,298,148 + MPMX20_03138 0.25 +2.7
3,298,161 + MPMX20_03138 0.25 +2.3
3,298,171 - MPMX20_03138 0.26 +2.4
3,298,171 - MPMX20_03138 0.26 +2.9
3,298,171 - MPMX20_03138 0.26 -1.7
3,298,229 - MPMX20_03138 0.30 +2.5
3,298,255 + MPMX20_03138 0.32 -2.7
3,298,322 + MPMX20_03138 0.36 -1.4
3,298,369 - MPMX20_03138 0.40 -1.1
3,298,381 + MPMX20_03138 0.40 -0.9
3,298,414 - MPMX20_03138 0.43 -2.2
3,298,435 + MPMX20_03138 0.44 +2.2
3,298,443 - MPMX20_03138 0.45 +0.6
3,298,452 + MPMX20_03138 0.45 +1.1
3,298,452 + MPMX20_03138 0.45 -0.1
3,298,452 + MPMX20_03138 0.45 -0.6
3,298,552 - MPMX20_03138 0.52 -0.6
3,298,668 + MPMX20_03138 0.60 +2.3
3,298,736 + MPMX20_03138 0.65 +2.3
3,298,744 - MPMX20_03138 0.65 -2.6
3,298,772 + MPMX20_03138 0.67 +1.5
3,298,772 + MPMX20_03138 0.67 -2.9
3,298,772 + MPMX20_03138 0.67 -3.0
3,298,772 + MPMX20_03138 0.67 -3.6
3,298,791 + MPMX20_03138 0.68 -0.4
3,298,794 - MPMX20_03138 0.69 -3.3
3,298,795 + MPMX20_03138 0.69 +2.4
3,298,801 - MPMX20_03138 0.69 +2.7
3,299,018 + MPMX20_03138 0.84 -2.1
3,299,026 - MPMX20_03138 0.84 +2.8
3,299,109 + +1.3
3,299,131 + -2.6
3,299,188 - -2.7
3,299,264 + +0.5
3,299,295 + +1.0
3,299,308 - -3.6
3,299,484 - MPMX20_03139 0.11 +1.3
3,299,532 - MPMX20_03139 0.16 -1.8
3,299,664 - MPMX20_03139 0.29 +0.5
3,299,750 + MPMX20_03139 0.38 -1.8
3,299,750 + MPMX20_03139 0.38 -1.8
3,299,859 - MPMX20_03139 0.49 -0.1
3,299,862 + MPMX20_03139 0.49 +0.4
3,299,864 - MPMX20_03139 0.49 +1.2
3,299,879 - MPMX20_03139 0.51 -3.1
3,299,884 - MPMX20_03139 0.51 -0.2
3,300,006 - MPMX20_03139 0.64 -2.0
3,300,031 + MPMX20_03139 0.66 -2.8
3,300,077 - MPMX20_03139 0.71 +0.5
3,300,077 - MPMX20_03139 0.71 -0.1
3,300,079 + MPMX20_03139 0.71 +1.4
3,300,156 - MPMX20_03139 0.79 -0.5
3,300,162 + MPMX20_03139 0.80 -1.5
3,300,170 - MPMX20_03139 0.80 +0.7
3,300,170 - MPMX20_03139 0.80 -0.9
3,300,186 - MPMX20_03139 0.82 +0.5
3,300,197 + MPMX20_03139 0.83 +0.5
3,300,206 + MPMX20_03139 0.84 +1.1
3,300,206 + MPMX20_03139 0.84 -3.4
3,300,206 + MPMX20_03139 0.84 +1.0
3,300,214 - MPMX20_03139 0.85 +1.4
3,300,214 - MPMX20_03139 0.85 -0.0

Or see this region's nucleotide sequence