Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03120 and MPMX20_03121 are separated by 295 nucleotides MPMX20_03121 and MPMX20_03122 are separated by 155 nucleotides
MPMX20_03120: MPMX20_03120 - D-galactose-binding periplasmic protein, at 3,276,598 to 3,277,596
_03120
MPMX20_03121: MPMX20_03121 - HTH-type transcriptional regulator GalS, at 3,277,892 to 3,278,914
_03121
MPMX20_03122: MPMX20_03122 - hypothetical protein, at 3,279,070 to 3,280,227
_03122
Position (kb)
3277
3278
3279 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 3276.942 kb on + strand, within MPMX20_03120 at 3276.950 kb on - strand, within MPMX20_03120 at 3276.960 kb on - strand, within MPMX20_03120 at 3276.982 kb on - strand, within MPMX20_03120 at 3277.025 kb on + strand, within MPMX20_03120 at 3277.070 kb on + strand, within MPMX20_03120 at 3277.074 kb on + strand, within MPMX20_03120 at 3277.108 kb on - strand, within MPMX20_03120 at 3277.108 kb on - strand, within MPMX20_03120 at 3277.123 kb on - strand, within MPMX20_03120 at 3277.125 kb on + strand, within MPMX20_03120 at 3277.140 kb on - strand, within MPMX20_03120 at 3277.158 kb on - strand, within MPMX20_03120 at 3277.168 kb on + strand, within MPMX20_03120 at 3277.176 kb on - strand, within MPMX20_03120 at 3277.202 kb on - strand, within MPMX20_03120 at 3277.205 kb on + strand, within MPMX20_03120 at 3277.228 kb on + strand, within MPMX20_03120 at 3277.228 kb on + strand, within MPMX20_03120 at 3277.236 kb on - strand, within MPMX20_03120 at 3277.236 kb on - strand, within MPMX20_03120 at 3277.236 kb on - strand, within MPMX20_03120 at 3277.275 kb on + strand, within MPMX20_03120 at 3277.327 kb on - strand, within MPMX20_03120 at 3277.329 kb on + strand, within MPMX20_03120 at 3277.344 kb on - strand, within MPMX20_03120 at 3277.344 kb on - strand, within MPMX20_03120 at 3277.352 kb on + strand, within MPMX20_03120 at 3277.352 kb on + strand, within MPMX20_03120 at 3277.360 kb on - strand, within MPMX20_03120 at 3277.360 kb on - strand, within MPMX20_03120 at 3277.422 kb on + strand, within MPMX20_03120 at 3277.460 kb on + strand, within MPMX20_03120 at 3277.517 kb on - strand at 3277.517 kb on - strand at 3277.519 kb on + strand at 3277.519 kb on + strand at 3277.527 kb on - strand at 3277.527 kb on - strand at 3277.575 kb on + strand at 3277.576 kb on + strand at 3277.576 kb on + strand at 3277.577 kb on + strand at 3277.584 kb on - strand at 3277.584 kb on - strand at 3277.584 kb on - strand at 3277.621 kb on + strand at 3277.629 kb on - strand at 3277.646 kb on + strand at 3277.728 kb on - strand at 3277.730 kb on - strand at 3277.922 kb on + strand at 3278.008 kb on - strand, within MPMX20_03121 at 3278.051 kb on - strand, within MPMX20_03121 at 3278.055 kb on + strand, within MPMX20_03121 at 3278.062 kb on + strand, within MPMX20_03121 at 3278.063 kb on - strand, within MPMX20_03121 at 3278.063 kb on - strand, within MPMX20_03121 at 3278.081 kb on - strand, within MPMX20_03121 at 3278.081 kb on - strand, within MPMX20_03121 at 3278.196 kb on + strand, within MPMX20_03121 at 3278.227 kb on - strand, within MPMX20_03121 at 3278.287 kb on - strand, within MPMX20_03121 at 3278.298 kb on - strand, within MPMX20_03121 at 3278.448 kb on + strand, within MPMX20_03121 at 3278.473 kb on + strand, within MPMX20_03121 at 3278.473 kb on - strand, within MPMX20_03121 at 3278.478 kb on + strand, within MPMX20_03121 at 3278.478 kb on - strand, within MPMX20_03121 at 3278.491 kb on - strand, within MPMX20_03121 at 3278.625 kb on - strand, within MPMX20_03121 at 3278.676 kb on + strand, within MPMX20_03121 at 3278.676 kb on + strand, within MPMX20_03121 at 3278.676 kb on + strand, within MPMX20_03121 at 3278.676 kb on + strand, within MPMX20_03121 at 3278.676 kb on + strand, within MPMX20_03121 at 3278.684 kb on - strand, within MPMX20_03121 at 3278.684 kb on - strand, within MPMX20_03121 at 3278.782 kb on + strand, within MPMX20_03121 at 3278.784 kb on - strand, within MPMX20_03121 at 3278.821 kb on + strand at 3278.826 kb on + strand at 3278.829 kb on - strand at 3278.944 kb on + strand at 3278.952 kb on - strand at 3279.104 kb on - strand at 3279.122 kb on + strand at 3279.122 kb on + strand at 3279.136 kb on - strand at 3279.227 kb on - strand, within MPMX20_03122 at 3279.269 kb on + strand, within MPMX20_03122 at 3279.271 kb on + strand, within MPMX20_03122 at 3279.277 kb on - strand, within MPMX20_03122 at 3279.277 kb on - strand, within MPMX20_03122 at 3279.446 kb on - strand, within MPMX20_03122 at 3279.524 kb on + strand, within MPMX20_03122 at 3279.524 kb on + strand, within MPMX20_03122 at 3279.590 kb on + strand, within MPMX20_03122 at 3279.775 kb on - strand, within MPMX20_03122 at 3279.817 kb on - strand, within MPMX20_03122 at 3279.898 kb on + strand, within MPMX20_03122
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 3,276,942 + MPMX20_03120 0.34 +0.9 3,276,950 - MPMX20_03120 0.35 -0.8 3,276,960 - MPMX20_03120 0.36 -1.4 3,276,982 - MPMX20_03120 0.38 -0.9 3,277,025 + MPMX20_03120 0.43 -0.1 3,277,070 + MPMX20_03120 0.47 -2.7 3,277,074 + MPMX20_03120 0.48 -1.3 3,277,108 - MPMX20_03120 0.51 -2.9 3,277,108 - MPMX20_03120 0.51 +0.2 3,277,123 - MPMX20_03120 0.53 -0.1 3,277,125 + MPMX20_03120 0.53 +2.0 3,277,140 - MPMX20_03120 0.54 +2.4 3,277,158 - MPMX20_03120 0.56 -0.1 3,277,168 + MPMX20_03120 0.57 +0.8 3,277,176 - MPMX20_03120 0.58 +0.6 3,277,202 - MPMX20_03120 0.60 +1.4 3,277,205 + MPMX20_03120 0.61 +0.6 3,277,228 + MPMX20_03120 0.63 -3.5 3,277,228 + MPMX20_03120 0.63 -2.6 3,277,236 - MPMX20_03120 0.64 +1.0 3,277,236 - MPMX20_03120 0.64 +3.0 3,277,236 - MPMX20_03120 0.64 -0.8 3,277,275 + MPMX20_03120 0.68 -1.6 3,277,327 - MPMX20_03120 0.73 -2.7 3,277,329 + MPMX20_03120 0.73 +0.5 3,277,344 - MPMX20_03120 0.75 -0.3 3,277,344 - MPMX20_03120 0.75 +1.9 3,277,352 + MPMX20_03120 0.75 -1.5 3,277,352 + MPMX20_03120 0.75 +2.7 3,277,360 - MPMX20_03120 0.76 +1.3 3,277,360 - MPMX20_03120 0.76 -2.4 3,277,422 + MPMX20_03120 0.82 -1.9 3,277,460 + MPMX20_03120 0.86 -2.6 3,277,517 - -2.1 3,277,517 - -0.9 3,277,519 + -2.7 3,277,519 + +0.6 3,277,527 - +0.2 3,277,527 - -1.2 3,277,575 + -1.1 3,277,576 + -1.4 3,277,576 + -2.4 3,277,577 + -3.2 3,277,584 - -0.8 3,277,584 - +1.2 3,277,584 - -1.1 3,277,621 + -3.2 3,277,629 - -1.9 3,277,646 + +2.0 3,277,728 - -3.2 3,277,730 - -1.4 3,277,922 + -2.6 3,278,008 - MPMX20_03121 0.11 -0.8 3,278,051 - MPMX20_03121 0.16 -2.4 3,278,055 + MPMX20_03121 0.16 +2.1 3,278,062 + MPMX20_03121 0.17 +1.1 3,278,063 - MPMX20_03121 0.17 +0.4 3,278,063 - MPMX20_03121 0.17 +3.6 3,278,081 - MPMX20_03121 0.18 +1.2 3,278,081 - MPMX20_03121 0.18 -0.8 3,278,196 + MPMX20_03121 0.30 -3.8 3,278,227 - MPMX20_03121 0.33 +0.6 3,278,287 - MPMX20_03121 0.39 +1.2 3,278,298 - MPMX20_03121 0.40 -0.6 3,278,448 + MPMX20_03121 0.54 +3.0 3,278,473 + MPMX20_03121 0.57 -2.4 3,278,473 - MPMX20_03121 0.57 +0.8 3,278,478 + MPMX20_03121 0.57 +1.5 3,278,478 - MPMX20_03121 0.57 +4.3 3,278,491 - MPMX20_03121 0.59 +2.5 3,278,625 - MPMX20_03121 0.72 +2.1 3,278,676 + MPMX20_03121 0.77 +0.2 3,278,676 + MPMX20_03121 0.77 +1.4 3,278,676 + MPMX20_03121 0.77 +2.0 3,278,676 + MPMX20_03121 0.77 -0.6 3,278,676 + MPMX20_03121 0.77 +0.3 3,278,684 - MPMX20_03121 0.77 +0.4 3,278,684 - MPMX20_03121 0.77 -3.5 3,278,782 + MPMX20_03121 0.87 -0.8 3,278,784 - MPMX20_03121 0.87 +0.6 3,278,821 + +0.2 3,278,826 + -2.3 3,278,829 - -0.9 3,278,944 + +2.3 3,278,952 - +0.2 3,279,104 - -3.9 3,279,122 + +2.2 3,279,122 + +0.2 3,279,136 - +0.2 3,279,227 - MPMX20_03122 0.14 -0.8 3,279,269 + MPMX20_03122 0.17 -0.8 3,279,271 + MPMX20_03122 0.17 +2.5 3,279,277 - MPMX20_03122 0.18 -1.5 3,279,277 - MPMX20_03122 0.18 +0.9 3,279,446 - MPMX20_03122 0.32 -1.9 3,279,524 + MPMX20_03122 0.39 -1.1 3,279,524 + MPMX20_03122 0.39 +0.8 3,279,590 + MPMX20_03122 0.45 +0.3 3,279,775 - MPMX20_03122 0.61 -1.1 3,279,817 - MPMX20_03122 0.65 -2.2 3,279,898 + MPMX20_03122 0.72 -0.8
Or see this region's nucleotide sequence