Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03094 and MPMX20_03095 are separated by 69 nucleotides MPMX20_03095 and MPMX20_03096 overlap by 26 nucleotides MPMX20_03096 and MPMX20_03097 overlap by 17 nucleotides MPMX20_03097 and MPMX20_03098 overlap by 8 nucleotides
MPMX20_03094: MPMX20_03094 - HTH-type transcriptional regulator MlrA, at 3,247,503 to 3,248,243
_03094
MPMX20_03095: MPMX20_03095 - hypothetical protein, at 3,248,313 to 3,248,426
_03095
MPMX20_03096: MPMX20_03096 - Glycine betaine uptake system permease protein YehW, at 3,248,401 to 3,249,138
_03096
MPMX20_03097: MPMX20_03097 - Glycine betaine uptake system ATP-binding protein YehX, at 3,249,122 to 3,250,072
_03097
MPMX20_03098: MPMX20_03098 - Glycine betaine uptake system permease protein YehY, at 3,250,065 to 3,251,222
_03098
Position (kb)
3249
3250
3251 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 3248.186 kb on - strand at 3248.204 kb on + strand at 3248.254 kb on - strand at 3248.268 kb on - strand at 3248.278 kb on + strand at 3248.286 kb on - strand at 3248.385 kb on - strand, within MPMX20_03095 at 3248.385 kb on - strand, within MPMX20_03095 at 3248.385 kb on - strand, within MPMX20_03095 at 3248.654 kb on + strand, within MPMX20_03096 at 3248.681 kb on + strand, within MPMX20_03096 at 3248.697 kb on - strand, within MPMX20_03096 at 3248.724 kb on + strand, within MPMX20_03096 at 3248.916 kb on - strand, within MPMX20_03096 at 3248.936 kb on - strand, within MPMX20_03096 at 3249.107 kb on + strand at 3249.115 kb on - strand at 3249.139 kb on - strand at 3249.146 kb on - strand at 3249.183 kb on - strand at 3249.263 kb on + strand, within MPMX20_03097 at 3249.332 kb on - strand, within MPMX20_03097 at 3249.409 kb on - strand, within MPMX20_03097 at 3249.492 kb on - strand, within MPMX20_03097 at 3249.517 kb on + strand, within MPMX20_03097 at 3249.547 kb on - strand, within MPMX20_03097 at 3249.610 kb on - strand, within MPMX20_03097 at 3249.660 kb on - strand, within MPMX20_03097 at 3249.699 kb on + strand, within MPMX20_03097 at 3249.700 kb on + strand, within MPMX20_03097 at 3249.700 kb on + strand, within MPMX20_03097 at 3249.708 kb on - strand, within MPMX20_03097 at 3249.708 kb on - strand, within MPMX20_03097 at 3249.833 kb on + strand, within MPMX20_03097 at 3249.899 kb on + strand, within MPMX20_03097 at 3249.899 kb on + strand, within MPMX20_03097 at 3249.907 kb on - strand, within MPMX20_03097 at 3250.076 kb on + strand at 3250.081 kb on + strand at 3250.089 kb on - strand at 3250.089 kb on - strand at 3250.089 kb on - strand at 3250.141 kb on - strand at 3250.167 kb on + strand at 3250.179 kb on + strand at 3250.179 kb on + strand at 3250.213 kb on - strand, within MPMX20_03098 at 3250.213 kb on - strand, within MPMX20_03098 at 3250.232 kb on - strand, within MPMX20_03098 at 3250.249 kb on - strand, within MPMX20_03098 at 3250.279 kb on - strand, within MPMX20_03098 at 3250.349 kb on - strand, within MPMX20_03098 at 3250.349 kb on - strand, within MPMX20_03098 at 3250.370 kb on + strand, within MPMX20_03098 at 3250.560 kb on + strand, within MPMX20_03098 at 3250.595 kb on - strand, within MPMX20_03098 at 3250.601 kb on - strand, within MPMX20_03098 at 3250.607 kb on + strand, within MPMX20_03098 at 3250.639 kb on - strand, within MPMX20_03098 at 3250.762 kb on - strand, within MPMX20_03098 at 3250.767 kb on - strand, within MPMX20_03098 at 3250.767 kb on - strand, within MPMX20_03098 at 3250.767 kb on - strand, within MPMX20_03098 at 3250.770 kb on - strand, within MPMX20_03098 at 3250.869 kb on - strand, within MPMX20_03098 at 3250.871 kb on + strand, within MPMX20_03098 at 3250.874 kb on - strand, within MPMX20_03098 at 3250.879 kb on - strand, within MPMX20_03098 at 3250.879 kb on - strand, within MPMX20_03098 at 3250.906 kb on + strand, within MPMX20_03098 at 3250.906 kb on - strand, within MPMX20_03098 at 3250.932 kb on + strand, within MPMX20_03098 at 3250.932 kb on + strand, within MPMX20_03098 at 3250.940 kb on - strand, within MPMX20_03098 at 3250.960 kb on + strand, within MPMX20_03098 at 3250.977 kb on + strand, within MPMX20_03098 at 3250.995 kb on - strand, within MPMX20_03098 at 3251.010 kb on - strand, within MPMX20_03098
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 3,248,186 - +0.7 3,248,204 + +1.3 3,248,254 - +1.4 3,248,268 - -3.3 3,248,278 + -2.8 3,248,286 - +0.7 3,248,385 - MPMX20_03095 0.63 -0.1 3,248,385 - MPMX20_03095 0.63 +2.8 3,248,385 - MPMX20_03095 0.63 -2.7 3,248,654 + MPMX20_03096 0.34 +1.3 3,248,681 + MPMX20_03096 0.38 -2.8 3,248,697 - MPMX20_03096 0.40 -0.1 3,248,724 + MPMX20_03096 0.44 +1.9 3,248,916 - MPMX20_03096 0.70 +4.3 3,248,936 - MPMX20_03096 0.72 -2.0 3,249,107 + -3.1 3,249,115 - -1.0 3,249,139 - -0.4 3,249,146 - +0.2 3,249,183 - +0.7 3,249,263 + MPMX20_03097 0.15 -0.6 3,249,332 - MPMX20_03097 0.22 +0.1 3,249,409 - MPMX20_03097 0.30 -1.9 3,249,492 - MPMX20_03097 0.39 -3.9 3,249,517 + MPMX20_03097 0.42 +0.5 3,249,547 - MPMX20_03097 0.45 -2.0 3,249,610 - MPMX20_03097 0.51 -2.6 3,249,660 - MPMX20_03097 0.57 -1.0 3,249,699 + MPMX20_03097 0.61 -0.8 3,249,700 + MPMX20_03097 0.61 -0.1 3,249,700 + MPMX20_03097 0.61 -1.1 3,249,708 - MPMX20_03097 0.62 -2.0 3,249,708 - MPMX20_03097 0.62 -1.9 3,249,833 + MPMX20_03097 0.75 -1.2 3,249,899 + MPMX20_03097 0.82 -1.5 3,249,899 + MPMX20_03097 0.82 +0.1 3,249,907 - MPMX20_03097 0.83 -0.7 3,250,076 + -4.0 3,250,081 + +0.1 3,250,089 - -2.6 3,250,089 - -2.3 3,250,089 - -2.7 3,250,141 - +0.3 3,250,167 + -1.2 3,250,179 + -4.1 3,250,179 + -1.7 3,250,213 - MPMX20_03098 0.13 +1.8 3,250,213 - MPMX20_03098 0.13 -1.7 3,250,232 - MPMX20_03098 0.14 -2.2 3,250,249 - MPMX20_03098 0.16 +2.0 3,250,279 - MPMX20_03098 0.18 +0.3 3,250,349 - MPMX20_03098 0.25 -1.4 3,250,349 - MPMX20_03098 0.25 -3.3 3,250,370 + MPMX20_03098 0.26 +0.9 3,250,560 + MPMX20_03098 0.43 -0.9 3,250,595 - MPMX20_03098 0.46 +0.9 3,250,601 - MPMX20_03098 0.46 -3.3 3,250,607 + MPMX20_03098 0.47 -0.9 3,250,639 - MPMX20_03098 0.50 +1.4 3,250,762 - MPMX20_03098 0.60 -1.8 3,250,767 - MPMX20_03098 0.61 +0.5 3,250,767 - MPMX20_03098 0.61 +3.2 3,250,767 - MPMX20_03098 0.61 +3.0 3,250,770 - MPMX20_03098 0.61 +0.5 3,250,869 - MPMX20_03098 0.69 -0.8 3,250,871 + MPMX20_03098 0.70 +0.1 3,250,874 - MPMX20_03098 0.70 +2.0 3,250,879 - MPMX20_03098 0.70 +0.8 3,250,879 - MPMX20_03098 0.70 +1.4 3,250,906 + MPMX20_03098 0.73 -2.5 3,250,906 - MPMX20_03098 0.73 +1.5 3,250,932 + MPMX20_03098 0.75 -2.8 3,250,932 + MPMX20_03098 0.75 -3.2 3,250,940 - MPMX20_03098 0.76 +2.9 3,250,960 + MPMX20_03098 0.77 +4.1 3,250,977 + MPMX20_03098 0.79 +1.2 3,250,995 - MPMX20_03098 0.80 -1.8 3,251,010 - MPMX20_03098 0.82 -3.5
Or see this region's nucleotide sequence