Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02905

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02902 and MPMX20_02903 overlap by 4 nucleotidesMPMX20_02903 and MPMX20_02904 overlap by 1 nucleotidesMPMX20_02904 and MPMX20_02905 are separated by 186 nucleotidesMPMX20_02905 and MPMX20_02906 are separated by 3 nucleotidesMPMX20_02906 and MPMX20_02907 overlap by 4 nucleotidesMPMX20_02907 and MPMX20_02908 overlap by 4 nucleotidesMPMX20_02908 and MPMX20_02909 overlap by 4 nucleotides MPMX20_02902: MPMX20_02902 - Serine/threonine-protein phosphatase 1, at 3,047,073 to 3,047,741 _02902 MPMX20_02903: MPMX20_02903 - hypothetical protein, at 3,047,738 to 3,047,908 _02903 MPMX20_02904: MPMX20_02904 - hypothetical protein, at 3,047,908 to 3,048,363 _02904 MPMX20_02905: MPMX20_02905 - hypothetical protein, at 3,048,550 to 3,049,257 _02905 MPMX20_02906: MPMX20_02906 - hypothetical protein, at 3,049,261 to 3,049,449 _02906 MPMX20_02907: MPMX20_02907 - hypothetical protein, at 3,049,446 to 3,049,922 _02907 MPMX20_02908: MPMX20_02908 - hypothetical protein, at 3,049,919 to 3,050,149 _02908 MPMX20_02909: MPMX20_02909 - hypothetical protein, at 3,050,146 to 3,050,445 _02909 Position (kb) 3048 3049 3050Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6at 3047.563 kb on - strand, within MPMX20_02902at 3047.563 kb on - strand, within MPMX20_02902at 3047.624 kb on - strand, within MPMX20_02902at 3047.655 kb on + strand, within MPMX20_02902at 3047.663 kb on + strand, within MPMX20_02902at 3047.681 kb on - strandat 3047.745 kb on + strandat 3047.796 kb on + strand, within MPMX20_02903at 3047.827 kb on + strand, within MPMX20_02903at 3047.896 kb on + strandat 3047.899 kb on - strandat 3047.899 kb on - strandat 3047.914 kb on - strandat 3047.940 kb on + strandat 3047.960 kb on + strand, within MPMX20_02904at 3047.967 kb on - strand, within MPMX20_02904at 3047.997 kb on - strand, within MPMX20_02904at 3048.014 kb on - strand, within MPMX20_02904at 3048.018 kb on + strand, within MPMX20_02904at 3048.084 kb on + strand, within MPMX20_02904at 3048.084 kb on + strand, within MPMX20_02904at 3048.092 kb on - strand, within MPMX20_02904at 3048.092 kb on - strand, within MPMX20_02904at 3048.092 kb on - strand, within MPMX20_02904at 3048.092 kb on - strand, within MPMX20_02904at 3048.097 kb on - strand, within MPMX20_02904at 3048.097 kb on - strand, within MPMX20_02904at 3048.118 kb on + strand, within MPMX20_02904at 3048.126 kb on - strand, within MPMX20_02904at 3048.142 kb on - strand, within MPMX20_02904at 3048.169 kb on - strand, within MPMX20_02904at 3048.169 kb on - strand, within MPMX20_02904at 3048.212 kb on - strand, within MPMX20_02904at 3048.253 kb on - strand, within MPMX20_02904at 3048.253 kb on - strand, within MPMX20_02904at 3048.259 kb on - strand, within MPMX20_02904at 3048.259 kb on - strand, within MPMX20_02904at 3048.379 kb on - strandat 3048.429 kb on + strandat 3048.464 kb on + strandat 3048.493 kb on + strandat 3048.496 kb on - strandat 3048.501 kb on - strandat 3048.569 kb on + strandat 3048.569 kb on + strandat 3048.569 kb on + strandat 3048.577 kb on - strandat 3048.577 kb on - strandat 3048.577 kb on - strandat 3048.577 kb on - strandat 3048.584 kb on + strandat 3048.594 kb on + strandat 3048.594 kb on + strandat 3048.594 kb on + strandat 3048.594 kb on + strandat 3048.594 kb on + strandat 3048.602 kb on - strandat 3048.602 kb on - strandat 3048.602 kb on - strandat 3048.602 kb on - strandat 3048.625 kb on + strand, within MPMX20_02905at 3048.643 kb on - strand, within MPMX20_02905at 3048.659 kb on - strand, within MPMX20_02905at 3048.659 kb on - strand, within MPMX20_02905at 3048.672 kb on + strand, within MPMX20_02905at 3048.740 kb on - strand, within MPMX20_02905at 3048.740 kb on - strand, within MPMX20_02905at 3048.837 kb on - strand, within MPMX20_02905at 3048.839 kb on + strand, within MPMX20_02905at 3048.902 kb on + strand, within MPMX20_02905at 3048.902 kb on + strand, within MPMX20_02905at 3048.963 kb on - strand, within MPMX20_02905at 3048.992 kb on + strand, within MPMX20_02905at 3048.992 kb on + strand, within MPMX20_02905at 3048.992 kb on + strand, within MPMX20_02905at 3048.992 kb on + strand, within MPMX20_02905at 3048.992 kb on + strand, within MPMX20_02905at 3048.992 kb on + strand, within MPMX20_02905at 3048.992 kb on + strand, within MPMX20_02905at 3049.000 kb on - strand, within MPMX20_02905at 3049.002 kb on - strand, within MPMX20_02905at 3049.162 kb on + strand, within MPMX20_02905at 3049.167 kb on + strand, within MPMX20_02905at 3049.260 kb on + strandat 3049.260 kb on - strandat 3049.267 kb on - strandat 3049.272 kb on - strandat 3049.279 kb on + strandat 3049.279 kb on + strandat 3049.279 kb on + strandat 3049.279 kb on + strandat 3049.279 kb on + strandat 3049.285 kb on + strand, within MPMX20_02906at 3049.285 kb on - strand, within MPMX20_02906at 3049.287 kb on - strand, within MPMX20_02906at 3049.287 kb on - strand, within MPMX20_02906at 3049.287 kb on - strand, within MPMX20_02906at 3049.287 kb on - strand, within MPMX20_02906at 3049.293 kb on - strand, within MPMX20_02906at 3049.293 kb on - strand, within MPMX20_02906at 3049.357 kb on + strand, within MPMX20_02906at 3049.403 kb on + strand, within MPMX20_02906at 3049.416 kb on - strand, within MPMX20_02906at 3049.433 kb on - strandat 3049.459 kb on + strandat 3049.549 kb on - strand, within MPMX20_02907at 3049.558 kb on + strand, within MPMX20_02907at 3049.566 kb on - strand, within MPMX20_02907at 3049.603 kb on + strand, within MPMX20_02907at 3049.603 kb on + strand, within MPMX20_02907at 3049.603 kb on + strand, within MPMX20_02907at 3049.611 kb on - strand, within MPMX20_02907at 3049.611 kb on - strand, within MPMX20_02907at 3049.624 kb on + strand, within MPMX20_02907at 3049.713 kb on + strand, within MPMX20_02907at 3049.738 kb on + strand, within MPMX20_02907at 3049.753 kb on + strand, within MPMX20_02907at 3049.761 kb on - strand, within MPMX20_02907at 3049.764 kb on + strand, within MPMX20_02907at 3049.791 kb on - strand, within MPMX20_02907at 3049.833 kb on - strand, within MPMX20_02907at 3049.846 kb on + strand, within MPMX20_02907at 3049.868 kb on - strand, within MPMX20_02907at 3049.875 kb on + strandat 3049.878 kb on - strandat 3049.883 kb on - strandat 3049.889 kb on - strandat 3049.932 kb on - strandat 3049.938 kb on + strandat 3049.941 kb on - strandat 3049.962 kb on + strand, within MPMX20_02908at 3049.962 kb on + strand, within MPMX20_02908at 3049.962 kb on + strand, within MPMX20_02908at 3049.963 kb on - strand, within MPMX20_02908at 3049.970 kb on - strand, within MPMX20_02908at 3049.970 kb on - strand, within MPMX20_02908at 3050.057 kb on - strand, within MPMX20_02908at 3050.079 kb on + strand, within MPMX20_02908at 3050.079 kb on + strand, within MPMX20_02908at 3050.079 kb on + strand, within MPMX20_02908at 3050.079 kb on + strand, within MPMX20_02908at 3050.079 kb on + strand, within MPMX20_02908at 3050.087 kb on - strand, within MPMX20_02908at 3050.087 kb on - strand, within MPMX20_02908at 3050.092 kb on - strand, within MPMX20_02908at 3050.121 kb on - strand, within MPMX20_02908at 3050.151 kb on + strandat 3050.151 kb on + strandat 3050.151 kb on + strandat 3050.151 kb on + strandat 3050.151 kb on + strandat 3050.151 kb on + strandat 3050.151 kb on + strandat 3050.159 kb on - strandat 3050.159 kb on - strandat 3050.159 kb on - strandat 3050.159 kb on - strandat 3050.169 kb on - strandat 3050.172 kb on + strandat 3050.178 kb on - strand, within MPMX20_02909at 3050.178 kb on - strand, within MPMX20_02909at 3050.205 kb on - strand, within MPMX20_02909at 3050.240 kb on + strand, within MPMX20_02909at 3050.240 kb on + strand, within MPMX20_02909at 3050.240 kb on + strand, within MPMX20_02909at 3050.248 kb on - strand, within MPMX20_02909at 3050.248 kb on - strand, within MPMX20_02909

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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3,047,563 - MPMX20_02902 0.73 -1.7
3,047,563 - MPMX20_02902 0.73 -2.9
3,047,624 - MPMX20_02902 0.82 +2.2
3,047,655 + MPMX20_02902 0.87 +4.4
3,047,663 + MPMX20_02902 0.88 +0.6
3,047,681 - +1.2
3,047,745 + +2.2
3,047,796 + MPMX20_02903 0.34 -0.0
3,047,827 + MPMX20_02903 0.52 -4.3
3,047,896 + -3.2
3,047,899 - +0.3
3,047,899 - -2.6
3,047,914 - +1.6
3,047,940 + +2.1
3,047,960 + MPMX20_02904 0.11 -0.9
3,047,967 - MPMX20_02904 0.13 +1.4
3,047,997 - MPMX20_02904 0.20 +0.6
3,048,014 - MPMX20_02904 0.23 +1.5
3,048,018 + MPMX20_02904 0.24 +3.2
3,048,084 + MPMX20_02904 0.39 -1.9
3,048,084 + MPMX20_02904 0.39 +0.1
3,048,092 - MPMX20_02904 0.40 +0.2
3,048,092 - MPMX20_02904 0.40 +0.4
3,048,092 - MPMX20_02904 0.40 -1.0
3,048,092 - MPMX20_02904 0.40 +2.4
3,048,097 - MPMX20_02904 0.41 +0.7
3,048,097 - MPMX20_02904 0.41 -0.4
3,048,118 + MPMX20_02904 0.46 +2.1
3,048,126 - MPMX20_02904 0.48 +0.1
3,048,142 - MPMX20_02904 0.51 +0.8
3,048,169 - MPMX20_02904 0.57 +1.0
3,048,169 - MPMX20_02904 0.57 -2.7
3,048,212 - MPMX20_02904 0.67 +0.6
3,048,253 - MPMX20_02904 0.76 +1.0
3,048,253 - MPMX20_02904 0.76 +2.0
3,048,259 - MPMX20_02904 0.77 +2.4
3,048,259 - MPMX20_02904 0.77 -0.4
3,048,379 - +0.7
3,048,429 + +4.5
3,048,464 + +1.7
3,048,493 + +0.1
3,048,496 - -3.4
3,048,501 - +2.2
3,048,569 + +0.3
3,048,569 + +1.2
3,048,569 + +2.0
3,048,577 - +1.4
3,048,577 - +2.4
3,048,577 - -0.4
3,048,577 - -2.0
3,048,584 + +1.9
3,048,594 + +3.3
3,048,594 + +0.5
3,048,594 + +0.4
3,048,594 + +2.4
3,048,594 + -0.8
3,048,602 - +2.3
3,048,602 - +2.4
3,048,602 - +1.8
3,048,602 - +2.5
3,048,625 + MPMX20_02905 0.11 +0.6
3,048,643 - MPMX20_02905 0.13 +1.7
3,048,659 - MPMX20_02905 0.15 -2.0
3,048,659 - MPMX20_02905 0.15 +3.0
3,048,672 + MPMX20_02905 0.17 +1.9
3,048,740 - MPMX20_02905 0.27 +1.8
3,048,740 - MPMX20_02905 0.27 -2.0
3,048,837 - MPMX20_02905 0.41 +0.2
3,048,839 + MPMX20_02905 0.41 +2.0
3,048,902 + MPMX20_02905 0.50 +1.2
3,048,902 + MPMX20_02905 0.50 +2.1
3,048,963 - MPMX20_02905 0.58 -0.6
3,048,992 + MPMX20_02905 0.62 +2.7
3,048,992 + MPMX20_02905 0.62 +5.9
3,048,992 + MPMX20_02905 0.62 -2.6
3,048,992 + MPMX20_02905 0.62 +0.4
3,048,992 + MPMX20_02905 0.62 -2.2
3,048,992 + MPMX20_02905 0.62 +2.6
3,048,992 + MPMX20_02905 0.62 -1.7
3,049,000 - MPMX20_02905 0.64 +1.4
3,049,002 - MPMX20_02905 0.64 +1.9
3,049,162 + MPMX20_02905 0.86 -3.8
3,049,167 + MPMX20_02905 0.87 +2.1
3,049,260 + -0.6
3,049,260 - -2.1
3,049,267 - -2.0
3,049,272 - +0.3
3,049,279 + +1.8
3,049,279 + -0.1
3,049,279 + +1.2
3,049,279 + -1.7
3,049,279 + -3.1
3,049,285 + MPMX20_02906 0.13 +0.4
3,049,285 - MPMX20_02906 0.13 +1.4
3,049,287 - MPMX20_02906 0.14 +1.4
3,049,287 - MPMX20_02906 0.14 -2.1
3,049,287 - MPMX20_02906 0.14 -0.6
3,049,287 - MPMX20_02906 0.14 +1.1
3,049,293 - MPMX20_02906 0.17 +1.7
3,049,293 - MPMX20_02906 0.17 +3.7
3,049,357 + MPMX20_02906 0.51 -3.4
3,049,403 + MPMX20_02906 0.75 -1.5
3,049,416 - MPMX20_02906 0.82 +3.0
3,049,433 - -3.2
3,049,459 + -0.8
3,049,549 - MPMX20_02907 0.22 +1.5
3,049,558 + MPMX20_02907 0.23 +2.6
3,049,566 - MPMX20_02907 0.25 -1.6
3,049,603 + MPMX20_02907 0.33 -4.2
3,049,603 + MPMX20_02907 0.33 -3.6
3,049,603 + MPMX20_02907 0.33 +2.1
3,049,611 - MPMX20_02907 0.35 -2.6
3,049,611 - MPMX20_02907 0.35 +1.9
3,049,624 + MPMX20_02907 0.37 -0.9
3,049,713 + MPMX20_02907 0.56 +2.0
3,049,738 + MPMX20_02907 0.61 +2.3
3,049,753 + MPMX20_02907 0.64 +0.2
3,049,761 - MPMX20_02907 0.66 +2.2
3,049,764 + MPMX20_02907 0.67 +1.1
3,049,791 - MPMX20_02907 0.72 +0.6
3,049,833 - MPMX20_02907 0.81 +3.6
3,049,846 + MPMX20_02907 0.84 +0.2
3,049,868 - MPMX20_02907 0.88 +3.3
3,049,875 + +1.4
3,049,878 - +0.5
3,049,883 - -0.8
3,049,889 - +1.8
3,049,932 - -2.7
3,049,938 + -4.1
3,049,941 - +0.4
3,049,962 + MPMX20_02908 0.19 +2.0
3,049,962 + MPMX20_02908 0.19 -3.0
3,049,962 + MPMX20_02908 0.19 +1.3
3,049,963 - MPMX20_02908 0.19 -3.3
3,049,970 - MPMX20_02908 0.22 +0.8
3,049,970 - MPMX20_02908 0.22 +1.3
3,050,057 - MPMX20_02908 0.60 -2.4
3,050,079 + MPMX20_02908 0.69 +0.4
3,050,079 + MPMX20_02908 0.69 -4.1
3,050,079 + MPMX20_02908 0.69 +1.8
3,050,079 + MPMX20_02908 0.69 -2.9
3,050,079 + MPMX20_02908 0.69 +0.6
3,050,087 - MPMX20_02908 0.73 -3.9
3,050,087 - MPMX20_02908 0.73 -0.1
3,050,092 - MPMX20_02908 0.75 +1.1
3,050,121 - MPMX20_02908 0.87 -0.6
3,050,151 + -1.4
3,050,151 + -1.3
3,050,151 + +1.3
3,050,151 + -2.7
3,050,151 + -3.5
3,050,151 + +1.9
3,050,151 + +0.9
3,050,159 - +1.4
3,050,159 - -0.8
3,050,159 - +0.2
3,050,159 - -3.2
3,050,169 - +0.4
3,050,172 + +0.8
3,050,178 - MPMX20_02909 0.11 +1.5
3,050,178 - MPMX20_02909 0.11 -2.2
3,050,205 - MPMX20_02909 0.20 -1.9
3,050,240 + MPMX20_02909 0.31 -2.4
3,050,240 + MPMX20_02909 0.31 -2.2
3,050,240 + MPMX20_02909 0.31 -2.5
3,050,248 - MPMX20_02909 0.34 +3.0
3,050,248 - MPMX20_02909 0.34 +0.6

Or see this region's nucleotide sequence