Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02859

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02858 and MPMX20_02859 are separated by 64 nucleotidesMPMX20_02859 and MPMX20_02860 are separated by 231 nucleotidesMPMX20_02860 and MPMX20_02861 overlap by 1 nucleotidesMPMX20_02861 and MPMX20_02862 are separated by 150 nucleotides MPMX20_02858: MPMX20_02858 - Cytoplasmic alpha-amylase, at 3,014,080 to 3,015,567 _02858 MPMX20_02859: MPMX20_02859 - hypothetical protein, at 3,015,632 to 3,016,045 _02859 MPMX20_02860: MPMX20_02860 - hypothetical protein, at 3,016,277 to 3,016,600 _02860 MPMX20_02861: MPMX20_02861 - hypothetical protein, at 3,016,600 to 3,016,839 _02861 MPMX20_02862: MPMX20_02862 - hypothetical protein, at 3,016,990 to 3,017,766 _02862 Position (kb) 3015 3016 3017Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3014.632 kb on + strand, within MPMX20_02858at 3014.634 kb on - strand, within MPMX20_02858at 3014.634 kb on - strand, within MPMX20_02858at 3014.634 kb on - strand, within MPMX20_02858at 3014.635 kb on - strand, within MPMX20_02858at 3014.648 kb on - strand, within MPMX20_02858at 3014.776 kb on + strand, within MPMX20_02858at 3014.793 kb on + strand, within MPMX20_02858at 3014.817 kb on + strand, within MPMX20_02858at 3014.822 kb on + strand, within MPMX20_02858at 3014.840 kb on - strand, within MPMX20_02858at 3014.869 kb on + strand, within MPMX20_02858at 3014.904 kb on + strand, within MPMX20_02858at 3014.904 kb on + strand, within MPMX20_02858at 3014.904 kb on + strand, within MPMX20_02858at 3014.907 kb on - strand, within MPMX20_02858at 3014.909 kb on + strand, within MPMX20_02858at 3014.909 kb on + strand, within MPMX20_02858at 3014.912 kb on - strand, within MPMX20_02858at 3014.912 kb on - strand, within MPMX20_02858at 3014.912 kb on - strand, within MPMX20_02858at 3014.922 kb on - strand, within MPMX20_02858at 3014.930 kb on + strand, within MPMX20_02858at 3015.027 kb on + strand, within MPMX20_02858at 3015.027 kb on + strand, within MPMX20_02858at 3015.027 kb on + strand, within MPMX20_02858at 3015.035 kb on - strand, within MPMX20_02858at 3015.075 kb on + strand, within MPMX20_02858at 3015.075 kb on + strand, within MPMX20_02858at 3015.077 kb on - strand, within MPMX20_02858at 3015.077 kb on - strand, within MPMX20_02858at 3015.124 kb on + strand, within MPMX20_02858at 3015.124 kb on - strand, within MPMX20_02858at 3015.131 kb on + strand, within MPMX20_02858at 3015.137 kb on + strand, within MPMX20_02858at 3015.139 kb on - strand, within MPMX20_02858at 3015.281 kb on + strand, within MPMX20_02858at 3015.323 kb on - strand, within MPMX20_02858at 3015.385 kb on - strand, within MPMX20_02858at 3015.519 kb on - strandat 3015.519 kb on - strandat 3015.547 kb on - strandat 3015.624 kb on + strandat 3015.680 kb on + strand, within MPMX20_02859at 3015.680 kb on + strand, within MPMX20_02859at 3015.699 kb on + strand, within MPMX20_02859at 3015.707 kb on - strand, within MPMX20_02859at 3015.733 kb on - strand, within MPMX20_02859at 3015.738 kb on - strand, within MPMX20_02859at 3015.781 kb on + strand, within MPMX20_02859at 3015.843 kb on + strand, within MPMX20_02859at 3015.846 kb on - strand, within MPMX20_02859at 3015.848 kb on + strand, within MPMX20_02859at 3015.851 kb on - strand, within MPMX20_02859at 3015.892 kb on + strand, within MPMX20_02859at 3015.892 kb on + strand, within MPMX20_02859at 3015.900 kb on - strand, within MPMX20_02859at 3015.900 kb on - strand, within MPMX20_02859at 3015.921 kb on + strand, within MPMX20_02859at 3015.973 kb on + strand, within MPMX20_02859at 3016.118 kb on + strandat 3016.171 kb on - strandat 3016.237 kb on + strandat 3016.237 kb on + strandat 3016.237 kb on + strandat 3016.245 kb on - strandat 3016.266 kb on + strandat 3016.270 kb on + strandat 3016.334 kb on + strand, within MPMX20_02860at 3016.342 kb on + strand, within MPMX20_02860at 3016.350 kb on - strand, within MPMX20_02860at 3016.351 kb on + strand, within MPMX20_02860at 3016.361 kb on + strand, within MPMX20_02860at 3016.412 kb on - strand, within MPMX20_02860at 3016.428 kb on - strand, within MPMX20_02860at 3016.433 kb on - strand, within MPMX20_02860at 3016.450 kb on + strand, within MPMX20_02860at 3016.458 kb on - strand, within MPMX20_02860at 3016.520 kb on + strand, within MPMX20_02860at 3016.520 kb on + strand, within MPMX20_02860at 3016.520 kb on + strand, within MPMX20_02860at 3016.520 kb on + strand, within MPMX20_02860at 3016.559 kb on - strand, within MPMX20_02860at 3016.628 kb on + strand, within MPMX20_02861at 3016.628 kb on + strand, within MPMX20_02861at 3016.636 kb on - strand, within MPMX20_02861at 3016.650 kb on + strand, within MPMX20_02861at 3016.657 kb on + strand, within MPMX20_02861at 3016.660 kb on - strand, within MPMX20_02861at 3016.689 kb on + strand, within MPMX20_02861at 3016.691 kb on + strand, within MPMX20_02861at 3016.691 kb on + strand, within MPMX20_02861at 3016.691 kb on + strand, within MPMX20_02861at 3016.691 kb on + strand, within MPMX20_02861at 3016.691 kb on + strand, within MPMX20_02861at 3016.697 kb on - strand, within MPMX20_02861at 3016.699 kb on - strand, within MPMX20_02861at 3016.699 kb on - strand, within MPMX20_02861at 3016.699 kb on - strand, within MPMX20_02861at 3016.715 kb on + strand, within MPMX20_02861at 3016.772 kb on + strand, within MPMX20_02861at 3016.778 kb on + strand, within MPMX20_02861at 3016.786 kb on + strand, within MPMX20_02861at 3016.786 kb on - strand, within MPMX20_02861at 3016.786 kb on - strand, within MPMX20_02861at 3016.786 kb on - strand, within MPMX20_02861at 3016.792 kb on - strand, within MPMX20_02861at 3016.824 kb on - strandat 3016.979 kb on - strandat 3017.007 kb on + strandat 3017.007 kb on + strandat 3017.007 kb on + strandat 3017.007 kb on + strandat 3017.015 kb on - strandat 3017.015 kb on - strandat 3017.017 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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3,014,632 + MPMX20_02858 0.37 -0.2
3,014,634 - MPMX20_02858 0.37 -1.0
3,014,634 - MPMX20_02858 0.37 -0.0
3,014,634 - MPMX20_02858 0.37 +3.7
3,014,635 - MPMX20_02858 0.37 -3.3
3,014,648 - MPMX20_02858 0.38 -0.7
3,014,776 + MPMX20_02858 0.47 -3.0
3,014,793 + MPMX20_02858 0.48 -1.0
3,014,817 + MPMX20_02858 0.50 -2.0
3,014,822 + MPMX20_02858 0.50 +2.6
3,014,840 - MPMX20_02858 0.51 -0.8
3,014,869 + MPMX20_02858 0.53 -0.3
3,014,904 + MPMX20_02858 0.55 -0.7
3,014,904 + MPMX20_02858 0.55 -3.3
3,014,904 + MPMX20_02858 0.55 +1.1
3,014,907 - MPMX20_02858 0.56 -2.5
3,014,909 + MPMX20_02858 0.56 -0.6
3,014,909 + MPMX20_02858 0.56 -0.3
3,014,912 - MPMX20_02858 0.56 -1.4
3,014,912 - MPMX20_02858 0.56 -2.8
3,014,912 - MPMX20_02858 0.56 +2.5
3,014,922 - MPMX20_02858 0.57 +1.2
3,014,930 + MPMX20_02858 0.57 -1.9
3,015,027 + MPMX20_02858 0.64 -3.2
3,015,027 + MPMX20_02858 0.64 -2.9
3,015,027 + MPMX20_02858 0.64 +0.1
3,015,035 - MPMX20_02858 0.64 +2.3
3,015,075 + MPMX20_02858 0.67 -2.5
3,015,075 + MPMX20_02858 0.67 -3.3
3,015,077 - MPMX20_02858 0.67 -1.8
3,015,077 - MPMX20_02858 0.67 -3.8
3,015,124 + MPMX20_02858 0.70 +2.4
3,015,124 - MPMX20_02858 0.70 +1.2
3,015,131 + MPMX20_02858 0.71 -1.0
3,015,137 + MPMX20_02858 0.71 +1.4
3,015,139 - MPMX20_02858 0.71 -2.4
3,015,281 + MPMX20_02858 0.81 +0.0
3,015,323 - MPMX20_02858 0.84 -4.1
3,015,385 - MPMX20_02858 0.88 -3.7
3,015,519 - -2.4
3,015,519 - -0.8
3,015,547 - -1.4
3,015,624 + +0.7
3,015,680 + MPMX20_02859 0.12 +1.0
3,015,680 + MPMX20_02859 0.12 -1.2
3,015,699 + MPMX20_02859 0.16 +1.3
3,015,707 - MPMX20_02859 0.18 +0.2
3,015,733 - MPMX20_02859 0.24 -2.2
3,015,738 - MPMX20_02859 0.26 +0.9
3,015,781 + MPMX20_02859 0.36 -1.7
3,015,843 + MPMX20_02859 0.51 +2.2
3,015,846 - MPMX20_02859 0.52 +2.1
3,015,848 + MPMX20_02859 0.52 +2.3
3,015,851 - MPMX20_02859 0.53 +0.8
3,015,892 + MPMX20_02859 0.63 +0.9
3,015,892 + MPMX20_02859 0.63 +2.6
3,015,900 - MPMX20_02859 0.65 +2.4
3,015,900 - MPMX20_02859 0.65 +1.0
3,015,921 + MPMX20_02859 0.70 -2.3
3,015,973 + MPMX20_02859 0.82 +2.0
3,016,118 + -0.7
3,016,171 - -3.2
3,016,237 + -0.2
3,016,237 + -0.6
3,016,237 + +1.8
3,016,245 - -2.4
3,016,266 + -0.4
3,016,270 + +1.6
3,016,334 + MPMX20_02860 0.18 -2.2
3,016,342 + MPMX20_02860 0.20 -2.6
3,016,350 - MPMX20_02860 0.23 -2.9
3,016,351 + MPMX20_02860 0.23 +2.4
3,016,361 + MPMX20_02860 0.26 +1.7
3,016,412 - MPMX20_02860 0.42 +2.0
3,016,428 - MPMX20_02860 0.47 -0.2
3,016,433 - MPMX20_02860 0.48 -0.7
3,016,450 + MPMX20_02860 0.53 +2.1
3,016,458 - MPMX20_02860 0.56 +2.1
3,016,520 + MPMX20_02860 0.75 +0.9
3,016,520 + MPMX20_02860 0.75 -2.2
3,016,520 + MPMX20_02860 0.75 -2.2
3,016,520 + MPMX20_02860 0.75 +0.5
3,016,559 - MPMX20_02860 0.87 -2.6
3,016,628 + MPMX20_02861 0.12 +1.2
3,016,628 + MPMX20_02861 0.12 +2.6
3,016,636 - MPMX20_02861 0.15 +1.2
3,016,650 + MPMX20_02861 0.21 +1.7
3,016,657 + MPMX20_02861 0.24 -0.6
3,016,660 - MPMX20_02861 0.25 +1.2
3,016,689 + MPMX20_02861 0.37 +1.2
3,016,691 + MPMX20_02861 0.38 +0.7
3,016,691 + MPMX20_02861 0.38 +2.0
3,016,691 + MPMX20_02861 0.38 +1.6
3,016,691 + MPMX20_02861 0.38 +1.8
3,016,691 + MPMX20_02861 0.38 +1.9
3,016,697 - MPMX20_02861 0.40 +0.7
3,016,699 - MPMX20_02861 0.41 -3.0
3,016,699 - MPMX20_02861 0.41 -0.8
3,016,699 - MPMX20_02861 0.41 +0.7
3,016,715 + MPMX20_02861 0.48 -3.4
3,016,772 + MPMX20_02861 0.72 +1.8
3,016,778 + MPMX20_02861 0.74 +3.4
3,016,786 + MPMX20_02861 0.78 +0.1
3,016,786 - MPMX20_02861 0.78 +1.0
3,016,786 - MPMX20_02861 0.78 +1.8
3,016,786 - MPMX20_02861 0.78 -3.1
3,016,792 - MPMX20_02861 0.80 +2.7
3,016,824 - -2.5
3,016,979 - -0.4
3,017,007 + +0.5
3,017,007 + +1.4
3,017,007 + +0.7
3,017,007 + +1.2
3,017,015 - +2.3
3,017,015 - +0.2
3,017,017 + +0.6

Or see this region's nucleotide sequence