Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02624 and MPMX20_02625 are separated by 228 nucleotides MPMX20_02625 and MPMX20_02626 are separated by 72 nucleotides MPMX20_02626 and MPMX20_02627 are separated by 106 nucleotides
MPMX20_02624: MPMX20_02624 - Nitrate/nitrite binding protein NrtA, at 2,768,360 to 2,769,607
_02624
MPMX20_02625: MPMX20_02625 - Nitrate regulatory protein, at 2,769,836 to 2,771,020
_02625
MPMX20_02626: MPMX20_02626 - Protein YchN, at 2,771,093 to 2,771,446
_02626
MPMX20_02627: MPMX20_02627 - Methyl-accepting chemotaxis protein PctC, at 2,771,553 to 2,773,337
_02627
Position (kb)
2769
2770
2771
2772 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2768.841 kb on + strand, within MPMX20_02624 at 2768.864 kb on + strand, within MPMX20_02624 at 2768.872 kb on - strand, within MPMX20_02624 at 2769.050 kb on - strand, within MPMX20_02624 at 2769.050 kb on - strand, within MPMX20_02624 at 2769.095 kb on - strand, within MPMX20_02624 at 2769.096 kb on - strand, within MPMX20_02624 at 2769.251 kb on - strand, within MPMX20_02624 at 2769.367 kb on - strand, within MPMX20_02624 at 2769.372 kb on - strand, within MPMX20_02624 at 2769.466 kb on + strand, within MPMX20_02624 at 2769.474 kb on - strand, within MPMX20_02624 at 2769.501 kb on - strand at 2769.553 kb on - strand at 2769.567 kb on + strand at 2769.676 kb on - strand at 2769.676 kb on - strand at 2769.688 kb on + strand at 2769.790 kb on + strand at 2769.849 kb on - strand at 2769.934 kb on + strand at 2769.939 kb on + strand at 2769.939 kb on + strand at 2769.947 kb on - strand at 2769.947 kb on - strand at 2770.012 kb on + strand, within MPMX20_02625 at 2770.020 kb on - strand, within MPMX20_02625 at 2770.040 kb on - strand, within MPMX20_02625 at 2770.054 kb on + strand, within MPMX20_02625 at 2770.132 kb on + strand, within MPMX20_02625 at 2770.173 kb on - strand, within MPMX20_02625 at 2770.210 kb on + strand, within MPMX20_02625 at 2770.210 kb on + strand, within MPMX20_02625 at 2770.210 kb on + strand, within MPMX20_02625 at 2770.218 kb on + strand, within MPMX20_02625 at 2770.218 kb on - strand, within MPMX20_02625 at 2770.254 kb on + strand, within MPMX20_02625 at 2770.262 kb on - strand, within MPMX20_02625 at 2770.262 kb on - strand, within MPMX20_02625 at 2770.262 kb on - strand, within MPMX20_02625 at 2770.262 kb on - strand, within MPMX20_02625 at 2770.272 kb on - strand, within MPMX20_02625 at 2770.324 kb on - strand, within MPMX20_02625 at 2770.387 kb on - strand, within MPMX20_02625 at 2770.406 kb on + strand, within MPMX20_02625 at 2770.599 kb on - strand, within MPMX20_02625 at 2770.633 kb on - strand, within MPMX20_02625 at 2770.683 kb on + strand, within MPMX20_02625 at 2770.723 kb on - strand, within MPMX20_02625 at 2770.739 kb on + strand, within MPMX20_02625 at 2770.747 kb on - strand, within MPMX20_02625 at 2770.747 kb on - strand, within MPMX20_02625 at 2770.785 kb on - strand, within MPMX20_02625 at 2770.791 kb on + strand, within MPMX20_02625 at 2770.825 kb on - strand, within MPMX20_02625 at 2770.835 kb on - strand, within MPMX20_02625 at 2770.835 kb on - strand, within MPMX20_02625 at 2770.835 kb on - strand, within MPMX20_02625 at 2770.840 kb on + strand, within MPMX20_02625 at 2770.841 kb on - strand, within MPMX20_02625 at 2770.841 kb on - strand, within MPMX20_02625 at 2770.848 kb on - strand, within MPMX20_02625 at 2770.865 kb on + strand, within MPMX20_02625 at 2770.900 kb on + strand, within MPMX20_02625 at 2770.908 kb on + strand at 2770.916 kb on - strand at 2770.916 kb on - strand at 2770.916 kb on - strand at 2770.935 kb on + strand at 2770.938 kb on - strand at 2770.938 kb on - strand at 2770.943 kb on + strand at 2770.971 kb on + strand at 2770.971 kb on + strand at 2770.979 kb on - strand at 2771.028 kb on + strand at 2771.028 kb on + strand at 2771.126 kb on + strand at 2771.167 kb on - strand, within MPMX20_02626 at 2771.232 kb on + strand, within MPMX20_02626 at 2771.240 kb on - strand, within MPMX20_02626 at 2771.323 kb on + strand, within MPMX20_02626 at 2771.323 kb on + strand, within MPMX20_02626 at 2771.368 kb on + strand, within MPMX20_02626 at 2771.412 kb on - strand at 2771.511 kb on - strand at 2771.595 kb on + strand at 2771.657 kb on - strand at 2771.687 kb on - strand at 2771.753 kb on - strand, within MPMX20_02627 at 2771.813 kb on + strand, within MPMX20_02627 at 2771.893 kb on + strand, within MPMX20_02627 at 2771.942 kb on - strand, within MPMX20_02627 at 2771.947 kb on - strand, within MPMX20_02627 at 2771.956 kb on - strand, within MPMX20_02627
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 2,768,841 + MPMX20_02624 0.39 +0.6 2,768,864 + MPMX20_02624 0.40 -1.9 2,768,872 - MPMX20_02624 0.41 -2.4 2,769,050 - MPMX20_02624 0.55 +1.3 2,769,050 - MPMX20_02624 0.55 -3.0 2,769,095 - MPMX20_02624 0.59 -1.8 2,769,096 - MPMX20_02624 0.59 +1.2 2,769,251 - MPMX20_02624 0.71 -2.1 2,769,367 - MPMX20_02624 0.81 -1.9 2,769,372 - MPMX20_02624 0.81 -1.0 2,769,466 + MPMX20_02624 0.89 +1.0 2,769,474 - MPMX20_02624 0.89 +1.0 2,769,501 - -2.0 2,769,553 - +0.5 2,769,567 + -1.3 2,769,676 - -2.1 2,769,676 - -3.5 2,769,688 + -1.9 2,769,790 + -3.3 2,769,849 - +2.3 2,769,934 + -1.0 2,769,939 + +1.6 2,769,939 + +1.5 2,769,947 - +1.8 2,769,947 - -2.7 2,770,012 + MPMX20_02625 0.15 +1.9 2,770,020 - MPMX20_02625 0.16 +1.1 2,770,040 - MPMX20_02625 0.17 +2.3 2,770,054 + MPMX20_02625 0.18 -2.0 2,770,132 + MPMX20_02625 0.25 +3.4 2,770,173 - MPMX20_02625 0.28 +1.7 2,770,210 + MPMX20_02625 0.32 -1.7 2,770,210 + MPMX20_02625 0.32 +1.1 2,770,210 + MPMX20_02625 0.32 -1.7 2,770,218 + MPMX20_02625 0.32 -1.4 2,770,218 - MPMX20_02625 0.32 -2.5 2,770,254 + MPMX20_02625 0.35 -0.2 2,770,262 - MPMX20_02625 0.36 -3.1 2,770,262 - MPMX20_02625 0.36 -1.0 2,770,262 - MPMX20_02625 0.36 +1.2 2,770,262 - MPMX20_02625 0.36 +0.5 2,770,272 - MPMX20_02625 0.37 +0.5 2,770,324 - MPMX20_02625 0.41 +0.0 2,770,387 - MPMX20_02625 0.46 -2.6 2,770,406 + MPMX20_02625 0.48 +0.9 2,770,599 - MPMX20_02625 0.64 +2.8 2,770,633 - MPMX20_02625 0.67 +1.8 2,770,683 + MPMX20_02625 0.71 +1.2 2,770,723 - MPMX20_02625 0.75 +1.5 2,770,739 + MPMX20_02625 0.76 +1.9 2,770,747 - MPMX20_02625 0.77 +0.9 2,770,747 - MPMX20_02625 0.77 -3.1 2,770,785 - MPMX20_02625 0.80 +1.7 2,770,791 + MPMX20_02625 0.81 -1.9 2,770,825 - MPMX20_02625 0.83 +1.2 2,770,835 - MPMX20_02625 0.84 -1.5 2,770,835 - MPMX20_02625 0.84 +0.3 2,770,835 - MPMX20_02625 0.84 -0.0 2,770,840 + MPMX20_02625 0.85 -0.8 2,770,841 - MPMX20_02625 0.85 -2.6 2,770,841 - MPMX20_02625 0.85 -1.8 2,770,848 - MPMX20_02625 0.85 +3.8 2,770,865 + MPMX20_02625 0.87 -1.5 2,770,900 + MPMX20_02625 0.90 +2.0 2,770,908 + -0.4 2,770,916 - -2.9 2,770,916 - +1.1 2,770,916 - +2.3 2,770,935 + +1.2 2,770,938 - +0.5 2,770,938 - +0.1 2,770,943 + +2.4 2,770,971 + -2.6 2,770,971 + -1.1 2,770,979 - +2.0 2,771,028 + -2.4 2,771,028 + -0.5 2,771,126 + -2.7 2,771,167 - MPMX20_02626 0.21 -1.1 2,771,232 + MPMX20_02626 0.39 -0.5 2,771,240 - MPMX20_02626 0.42 -0.5 2,771,323 + MPMX20_02626 0.65 -1.3 2,771,323 + MPMX20_02626 0.65 -2.2 2,771,368 + MPMX20_02626 0.78 -0.0 2,771,412 - -1.5 2,771,511 - -1.4 2,771,595 + -1.9 2,771,657 - -2.4 2,771,687 - +0.3 2,771,753 - MPMX20_02627 0.11 -1.0 2,771,813 + MPMX20_02627 0.15 -0.3 2,771,893 + MPMX20_02627 0.19 +1.4 2,771,942 - MPMX20_02627 0.22 -1.5 2,771,947 - MPMX20_02627 0.22 +0.5 2,771,956 - MPMX20_02627 0.23 -2.1
Or see this region's nucleotide sequence