Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02625

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02624 and MPMX20_02625 are separated by 228 nucleotidesMPMX20_02625 and MPMX20_02626 are separated by 72 nucleotidesMPMX20_02626 and MPMX20_02627 are separated by 106 nucleotides MPMX20_02624: MPMX20_02624 - Nitrate/nitrite binding protein NrtA, at 2,768,360 to 2,769,607 _02624 MPMX20_02625: MPMX20_02625 - Nitrate regulatory protein, at 2,769,836 to 2,771,020 _02625 MPMX20_02626: MPMX20_02626 - Protein YchN, at 2,771,093 to 2,771,446 _02626 MPMX20_02627: MPMX20_02627 - Methyl-accepting chemotaxis protein PctC, at 2,771,553 to 2,773,337 _02627 Position (kb) 2769 2770 2771 2772Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2768.841 kb on + strand, within MPMX20_02624at 2768.864 kb on + strand, within MPMX20_02624at 2768.872 kb on - strand, within MPMX20_02624at 2769.050 kb on - strand, within MPMX20_02624at 2769.050 kb on - strand, within MPMX20_02624at 2769.095 kb on - strand, within MPMX20_02624at 2769.096 kb on - strand, within MPMX20_02624at 2769.251 kb on - strand, within MPMX20_02624at 2769.367 kb on - strand, within MPMX20_02624at 2769.372 kb on - strand, within MPMX20_02624at 2769.466 kb on + strand, within MPMX20_02624at 2769.474 kb on - strand, within MPMX20_02624at 2769.501 kb on - strandat 2769.553 kb on - strandat 2769.567 kb on + strandat 2769.676 kb on - strandat 2769.676 kb on - strandat 2769.688 kb on + strandat 2769.790 kb on + strandat 2769.849 kb on - strandat 2769.934 kb on + strandat 2769.939 kb on + strandat 2769.939 kb on + strandat 2769.947 kb on - strandat 2769.947 kb on - strandat 2770.012 kb on + strand, within MPMX20_02625at 2770.020 kb on - strand, within MPMX20_02625at 2770.040 kb on - strand, within MPMX20_02625at 2770.054 kb on + strand, within MPMX20_02625at 2770.132 kb on + strand, within MPMX20_02625at 2770.173 kb on - strand, within MPMX20_02625at 2770.210 kb on + strand, within MPMX20_02625at 2770.210 kb on + strand, within MPMX20_02625at 2770.210 kb on + strand, within MPMX20_02625at 2770.218 kb on + strand, within MPMX20_02625at 2770.218 kb on - strand, within MPMX20_02625at 2770.254 kb on + strand, within MPMX20_02625at 2770.262 kb on - strand, within MPMX20_02625at 2770.262 kb on - strand, within MPMX20_02625at 2770.262 kb on - strand, within MPMX20_02625at 2770.262 kb on - strand, within MPMX20_02625at 2770.272 kb on - strand, within MPMX20_02625at 2770.324 kb on - strand, within MPMX20_02625at 2770.387 kb on - strand, within MPMX20_02625at 2770.406 kb on + strand, within MPMX20_02625at 2770.599 kb on - strand, within MPMX20_02625at 2770.633 kb on - strand, within MPMX20_02625at 2770.683 kb on + strand, within MPMX20_02625at 2770.723 kb on - strand, within MPMX20_02625at 2770.739 kb on + strand, within MPMX20_02625at 2770.747 kb on - strand, within MPMX20_02625at 2770.747 kb on - strand, within MPMX20_02625at 2770.785 kb on - strand, within MPMX20_02625at 2770.791 kb on + strand, within MPMX20_02625at 2770.825 kb on - strand, within MPMX20_02625at 2770.835 kb on - strand, within MPMX20_02625at 2770.835 kb on - strand, within MPMX20_02625at 2770.835 kb on - strand, within MPMX20_02625at 2770.840 kb on + strand, within MPMX20_02625at 2770.841 kb on - strand, within MPMX20_02625at 2770.841 kb on - strand, within MPMX20_02625at 2770.848 kb on - strand, within MPMX20_02625at 2770.865 kb on + strand, within MPMX20_02625at 2770.900 kb on + strand, within MPMX20_02625at 2770.908 kb on + strandat 2770.916 kb on - strandat 2770.916 kb on - strandat 2770.916 kb on - strandat 2770.935 kb on + strandat 2770.938 kb on - strandat 2770.938 kb on - strandat 2770.943 kb on + strandat 2770.971 kb on + strandat 2770.971 kb on + strandat 2770.979 kb on - strandat 2771.028 kb on + strandat 2771.028 kb on + strandat 2771.126 kb on + strandat 2771.167 kb on - strand, within MPMX20_02626at 2771.232 kb on + strand, within MPMX20_02626at 2771.240 kb on - strand, within MPMX20_02626at 2771.323 kb on + strand, within MPMX20_02626at 2771.323 kb on + strand, within MPMX20_02626at 2771.368 kb on + strand, within MPMX20_02626at 2771.412 kb on - strandat 2771.511 kb on - strandat 2771.595 kb on + strandat 2771.657 kb on - strandat 2771.687 kb on - strandat 2771.753 kb on - strand, within MPMX20_02627at 2771.813 kb on + strand, within MPMX20_02627at 2771.893 kb on + strand, within MPMX20_02627at 2771.942 kb on - strand, within MPMX20_02627at 2771.947 kb on - strand, within MPMX20_02627at 2771.956 kb on - strand, within MPMX20_02627

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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2,768,841 + MPMX20_02624 0.39 +0.6
2,768,864 + MPMX20_02624 0.40 -1.9
2,768,872 - MPMX20_02624 0.41 -2.4
2,769,050 - MPMX20_02624 0.55 +1.3
2,769,050 - MPMX20_02624 0.55 -3.0
2,769,095 - MPMX20_02624 0.59 -1.8
2,769,096 - MPMX20_02624 0.59 +1.2
2,769,251 - MPMX20_02624 0.71 -2.1
2,769,367 - MPMX20_02624 0.81 -1.9
2,769,372 - MPMX20_02624 0.81 -1.0
2,769,466 + MPMX20_02624 0.89 +1.0
2,769,474 - MPMX20_02624 0.89 +1.0
2,769,501 - -2.0
2,769,553 - +0.5
2,769,567 + -1.3
2,769,676 - -2.1
2,769,676 - -3.5
2,769,688 + -1.9
2,769,790 + -3.3
2,769,849 - +2.3
2,769,934 + -1.0
2,769,939 + +1.6
2,769,939 + +1.5
2,769,947 - +1.8
2,769,947 - -2.7
2,770,012 + MPMX20_02625 0.15 +1.9
2,770,020 - MPMX20_02625 0.16 +1.1
2,770,040 - MPMX20_02625 0.17 +2.3
2,770,054 + MPMX20_02625 0.18 -2.0
2,770,132 + MPMX20_02625 0.25 +3.4
2,770,173 - MPMX20_02625 0.28 +1.7
2,770,210 + MPMX20_02625 0.32 -1.7
2,770,210 + MPMX20_02625 0.32 +1.1
2,770,210 + MPMX20_02625 0.32 -1.7
2,770,218 + MPMX20_02625 0.32 -1.4
2,770,218 - MPMX20_02625 0.32 -2.5
2,770,254 + MPMX20_02625 0.35 -0.2
2,770,262 - MPMX20_02625 0.36 -3.1
2,770,262 - MPMX20_02625 0.36 -1.0
2,770,262 - MPMX20_02625 0.36 +1.2
2,770,262 - MPMX20_02625 0.36 +0.5
2,770,272 - MPMX20_02625 0.37 +0.5
2,770,324 - MPMX20_02625 0.41 +0.0
2,770,387 - MPMX20_02625 0.46 -2.6
2,770,406 + MPMX20_02625 0.48 +0.9
2,770,599 - MPMX20_02625 0.64 +2.8
2,770,633 - MPMX20_02625 0.67 +1.8
2,770,683 + MPMX20_02625 0.71 +1.2
2,770,723 - MPMX20_02625 0.75 +1.5
2,770,739 + MPMX20_02625 0.76 +1.9
2,770,747 - MPMX20_02625 0.77 +0.9
2,770,747 - MPMX20_02625 0.77 -3.1
2,770,785 - MPMX20_02625 0.80 +1.7
2,770,791 + MPMX20_02625 0.81 -1.9
2,770,825 - MPMX20_02625 0.83 +1.2
2,770,835 - MPMX20_02625 0.84 -1.5
2,770,835 - MPMX20_02625 0.84 +0.3
2,770,835 - MPMX20_02625 0.84 -0.0
2,770,840 + MPMX20_02625 0.85 -0.8
2,770,841 - MPMX20_02625 0.85 -2.6
2,770,841 - MPMX20_02625 0.85 -1.8
2,770,848 - MPMX20_02625 0.85 +3.8
2,770,865 + MPMX20_02625 0.87 -1.5
2,770,900 + MPMX20_02625 0.90 +2.0
2,770,908 + -0.4
2,770,916 - -2.9
2,770,916 - +1.1
2,770,916 - +2.3
2,770,935 + +1.2
2,770,938 - +0.5
2,770,938 - +0.1
2,770,943 + +2.4
2,770,971 + -2.6
2,770,971 + -1.1
2,770,979 - +2.0
2,771,028 + -2.4
2,771,028 + -0.5
2,771,126 + -2.7
2,771,167 - MPMX20_02626 0.21 -1.1
2,771,232 + MPMX20_02626 0.39 -0.5
2,771,240 - MPMX20_02626 0.42 -0.5
2,771,323 + MPMX20_02626 0.65 -1.3
2,771,323 + MPMX20_02626 0.65 -2.2
2,771,368 + MPMX20_02626 0.78 -0.0
2,771,412 - -1.5
2,771,511 - -1.4
2,771,595 + -1.9
2,771,657 - -2.4
2,771,687 - +0.3
2,771,753 - MPMX20_02627 0.11 -1.0
2,771,813 + MPMX20_02627 0.15 -0.3
2,771,893 + MPMX20_02627 0.19 +1.4
2,771,942 - MPMX20_02627 0.22 -1.5
2,771,947 - MPMX20_02627 0.22 +0.5
2,771,956 - MPMX20_02627 0.23 -2.1

Or see this region's nucleotide sequence