Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02568 and MPMX20_02569 overlap by 4 nucleotides MPMX20_02569 and MPMX20_02570 are separated by 140 nucleotides MPMX20_02570 and MPMX20_02571 are separated by 334 nucleotides
MPMX20_02568: MPMX20_02568 - hypothetical protein, at 2,706,887 to 2,708,098
_02568
MPMX20_02569: MPMX20_02569 - Putative sulfur carrier protein YedF, at 2,708,095 to 2,708,328
_02569
MPMX20_02570: MPMX20_02570 - Universal stress protein F, at 2,708,469 to 2,708,903
_02570
MPMX20_02571: MPMX20_02571 - Outer membrane protein W, at 2,709,238 to 2,709,870
_02571
Position (kb)
2708
2709 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2707.104 kb on + strand, within MPMX20_02568 at 2707.107 kb on - strand, within MPMX20_02568 at 2707.109 kb on + strand, within MPMX20_02568 at 2707.117 kb on - strand, within MPMX20_02568 at 2707.117 kb on - strand, within MPMX20_02568 at 2707.117 kb on - strand, within MPMX20_02568 at 2707.117 kb on - strand, within MPMX20_02568 at 2707.117 kb on - strand, within MPMX20_02568 at 2707.117 kb on - strand, within MPMX20_02568 at 2707.136 kb on - strand, within MPMX20_02568 at 2707.143 kb on - strand, within MPMX20_02568 at 2707.185 kb on + strand, within MPMX20_02568 at 2707.271 kb on + strand, within MPMX20_02568 at 2707.279 kb on + strand, within MPMX20_02568 at 2707.286 kb on - strand, within MPMX20_02568 at 2707.286 kb on - strand, within MPMX20_02568 at 2707.286 kb on - strand, within MPMX20_02568 at 2707.315 kb on + strand, within MPMX20_02568 at 2707.336 kb on - strand, within MPMX20_02568 at 2707.367 kb on - strand, within MPMX20_02568 at 2707.408 kb on + strand, within MPMX20_02568 at 2707.416 kb on - strand, within MPMX20_02568 at 2707.517 kb on + strand, within MPMX20_02568 at 2707.534 kb on + strand, within MPMX20_02568 at 2707.631 kb on + strand, within MPMX20_02568 at 2707.639 kb on - strand, within MPMX20_02568 at 2707.774 kb on + strand, within MPMX20_02568 at 2707.858 kb on - strand, within MPMX20_02568 at 2707.865 kb on + strand, within MPMX20_02568 at 2707.865 kb on + strand, within MPMX20_02568 at 2707.873 kb on - strand, within MPMX20_02568 at 2707.873 kb on - strand, within MPMX20_02568 at 2707.873 kb on - strand, within MPMX20_02568 at 2707.884 kb on + strand, within MPMX20_02568 at 2707.884 kb on + strand, within MPMX20_02568 at 2707.892 kb on - strand, within MPMX20_02568 at 2707.941 kb on + strand, within MPMX20_02568 at 2707.947 kb on + strand, within MPMX20_02568 at 2707.947 kb on + strand, within MPMX20_02568 at 2707.947 kb on + strand, within MPMX20_02568 at 2707.947 kb on + strand, within MPMX20_02568 at 2707.983 kb on - strand at 2708.005 kb on + strand at 2708.118 kb on - strand at 2708.139 kb on + strand, within MPMX20_02569 at 2708.139 kb on + strand, within MPMX20_02569 at 2708.147 kb on - strand, within MPMX20_02569 at 2708.147 kb on - strand, within MPMX20_02569 at 2708.186 kb on - strand, within MPMX20_02569 at 2708.211 kb on + strand, within MPMX20_02569 at 2708.265 kb on + strand, within MPMX20_02569 at 2708.273 kb on - strand, within MPMX20_02569 at 2708.273 kb on - strand, within MPMX20_02569 at 2708.275 kb on + strand, within MPMX20_02569 at 2708.283 kb on - strand, within MPMX20_02569 at 2708.351 kb on - strand at 2708.353 kb on - strand at 2708.363 kb on - strand at 2708.410 kb on + strand at 2708.526 kb on - strand, within MPMX20_02570 at 2708.533 kb on - strand, within MPMX20_02570 at 2708.536 kb on + strand, within MPMX20_02570 at 2708.538 kb on + strand, within MPMX20_02570 at 2708.538 kb on + strand, within MPMX20_02570 at 2708.538 kb on + strand, within MPMX20_02570 at 2708.619 kb on + strand, within MPMX20_02570 at 2708.619 kb on + strand, within MPMX20_02570 at 2708.619 kb on + strand, within MPMX20_02570 at 2708.624 kb on + strand, within MPMX20_02570 at 2708.624 kb on + strand, within MPMX20_02570 at 2708.627 kb on - strand, within MPMX20_02570 at 2708.627 kb on - strand, within MPMX20_02570 at 2708.627 kb on - strand, within MPMX20_02570 at 2708.632 kb on - strand, within MPMX20_02570 at 2708.692 kb on + strand, within MPMX20_02570 at 2708.692 kb on + strand, within MPMX20_02570 at 2708.710 kb on - strand, within MPMX20_02570 at 2708.710 kb on - strand, within MPMX20_02570 at 2708.710 kb on - strand, within MPMX20_02570 at 2708.723 kb on + strand, within MPMX20_02570 at 2708.724 kb on + strand, within MPMX20_02570 at 2708.783 kb on + strand, within MPMX20_02570 at 2708.788 kb on + strand, within MPMX20_02570 at 2708.796 kb on - strand, within MPMX20_02570 at 2708.836 kb on + strand, within MPMX20_02570 at 2708.846 kb on + strand, within MPMX20_02570 at 2708.897 kb on + strand at 2708.925 kb on + strand at 2708.962 kb on + strand at 2708.962 kb on + strand at 2708.962 kb on + strand at 2708.967 kb on + strand at 2708.968 kb on - strand at 2708.970 kb on - strand at 2708.975 kb on - strand at 2708.976 kb on - strand at 2709.003 kb on + strand at 2709.003 kb on + strand at 2709.061 kb on + strand at 2709.071 kb on + strand at 2709.077 kb on + strand at 2709.079 kb on - strand at 2709.082 kb on + strand at 2709.082 kb on + strand at 2709.090 kb on - strand at 2709.146 kb on - strand at 2709.153 kb on + strand at 2709.156 kb on - strand at 2709.165 kb on + strand at 2709.189 kb on - strand at 2709.197 kb on + strand at 2709.197 kb on + strand at 2709.197 kb on + strand at 2709.197 kb on + strand at 2709.197 kb on + strand at 2709.197 kb on + strand at 2709.197 kb on + strand at 2709.205 kb on - strand at 2709.205 kb on - strand at 2709.207 kb on + strand at 2709.208 kb on + strand at 2709.213 kb on + strand at 2709.213 kb on + strand at 2709.215 kb on - strand at 2709.216 kb on - strand at 2709.216 kb on - strand at 2709.221 kb on - strand at 2709.221 kb on - strand at 2709.222 kb on + strand at 2709.223 kb on + strand at 2709.230 kb on - strand at 2709.230 kb on - strand at 2709.231 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 2,707,104 + MPMX20_02568 0.18 -1.1 2,707,107 - MPMX20_02568 0.18 +3.5 2,707,109 + MPMX20_02568 0.18 +0.1 2,707,117 - MPMX20_02568 0.19 +1.2 2,707,117 - MPMX20_02568 0.19 -0.8 2,707,117 - MPMX20_02568 0.19 -3.8 2,707,117 - MPMX20_02568 0.19 +2.1 2,707,117 - MPMX20_02568 0.19 -2.5 2,707,117 - MPMX20_02568 0.19 +2.3 2,707,136 - MPMX20_02568 0.21 -2.7 2,707,143 - MPMX20_02568 0.21 -2.5 2,707,185 + MPMX20_02568 0.25 -2.8 2,707,271 + MPMX20_02568 0.32 -2.8 2,707,279 + MPMX20_02568 0.32 +1.0 2,707,286 - MPMX20_02568 0.33 +1.9 2,707,286 - MPMX20_02568 0.33 +1.2 2,707,286 - MPMX20_02568 0.33 -2.3 2,707,315 + MPMX20_02568 0.35 +0.4 2,707,336 - MPMX20_02568 0.37 +0.9 2,707,367 - MPMX20_02568 0.40 -2.8 2,707,408 + MPMX20_02568 0.43 +1.0 2,707,416 - MPMX20_02568 0.44 +0.4 2,707,517 + MPMX20_02568 0.52 -3.6 2,707,534 + MPMX20_02568 0.53 -2.1 2,707,631 + MPMX20_02568 0.61 +0.5 2,707,639 - MPMX20_02568 0.62 +2.8 2,707,774 + MPMX20_02568 0.73 -2.3 2,707,858 - MPMX20_02568 0.80 -2.1 2,707,865 + MPMX20_02568 0.81 +1.6 2,707,865 + MPMX20_02568 0.81 -1.7 2,707,873 - MPMX20_02568 0.81 +2.0 2,707,873 - MPMX20_02568 0.81 +2.1 2,707,873 - MPMX20_02568 0.81 +1.6 2,707,884 + MPMX20_02568 0.82 -2.1 2,707,884 + MPMX20_02568 0.82 -2.2 2,707,892 - MPMX20_02568 0.83 +2.5 2,707,941 + MPMX20_02568 0.87 +2.4 2,707,947 + MPMX20_02568 0.87 +1.1 2,707,947 + MPMX20_02568 0.87 -2.4 2,707,947 + MPMX20_02568 0.87 -2.6 2,707,947 + MPMX20_02568 0.87 +2.2 2,707,983 - +0.9 2,708,005 + -2.2 2,708,118 - -1.7 2,708,139 + MPMX20_02569 0.19 +1.8 2,708,139 + MPMX20_02569 0.19 -0.6 2,708,147 - MPMX20_02569 0.22 -2.5 2,708,147 - MPMX20_02569 0.22 -2.4 2,708,186 - MPMX20_02569 0.39 +0.0 2,708,211 + MPMX20_02569 0.50 -2.3 2,708,265 + MPMX20_02569 0.73 -2.4 2,708,273 - MPMX20_02569 0.76 -1.8 2,708,273 - MPMX20_02569 0.76 -2.4 2,708,275 + MPMX20_02569 0.77 +0.0 2,708,283 - MPMX20_02569 0.80 -0.5 2,708,351 - +1.7 2,708,353 - +1.3 2,708,363 - +2.2 2,708,410 + -1.1 2,708,526 - MPMX20_02570 0.13 -3.9 2,708,533 - MPMX20_02570 0.15 +1.9 2,708,536 + MPMX20_02570 0.15 +2.0 2,708,538 + MPMX20_02570 0.16 -2.1 2,708,538 + MPMX20_02570 0.16 +1.2 2,708,538 + MPMX20_02570 0.16 -1.5 2,708,619 + MPMX20_02570 0.34 +0.6 2,708,619 + MPMX20_02570 0.34 +2.9 2,708,619 + MPMX20_02570 0.34 +1.3 2,708,624 + MPMX20_02570 0.36 -0.1 2,708,624 + MPMX20_02570 0.36 -0.2 2,708,627 - MPMX20_02570 0.36 -2.8 2,708,627 - MPMX20_02570 0.36 -0.5 2,708,627 - MPMX20_02570 0.36 -2.4 2,708,632 - MPMX20_02570 0.37 -2.4 2,708,692 + MPMX20_02570 0.51 -2.0 2,708,692 + MPMX20_02570 0.51 +1.5 2,708,710 - MPMX20_02570 0.55 -0.3 2,708,710 - MPMX20_02570 0.55 -2.2 2,708,710 - MPMX20_02570 0.55 +1.8 2,708,723 + MPMX20_02570 0.58 +0.7 2,708,724 + MPMX20_02570 0.59 -1.8 2,708,783 + MPMX20_02570 0.72 +1.5 2,708,788 + MPMX20_02570 0.73 +0.5 2,708,796 - MPMX20_02570 0.75 -2.5 2,708,836 + MPMX20_02570 0.84 -3.3 2,708,846 + MPMX20_02570 0.87 -0.8 2,708,897 + +0.3 2,708,925 + +0.0 2,708,962 + -2.5 2,708,962 + -2.6 2,708,962 + -2.1 2,708,967 + -3.0 2,708,968 - +3.0 2,708,970 - +0.6 2,708,975 - +0.3 2,708,976 - -3.5 2,709,003 + -2.4 2,709,003 + -2.5 2,709,061 + -1.8 2,709,071 + +1.1 2,709,077 + +1.9 2,709,079 - -3.2 2,709,082 + -3.2 2,709,082 + -0.3 2,709,090 - +2.6 2,709,146 - -1.3 2,709,153 + +1.7 2,709,156 - +1.2 2,709,165 + +1.3 2,709,189 - +3.4 2,709,197 + -0.5 2,709,197 + +1.1 2,709,197 + +1.0 2,709,197 + -1.1 2,709,197 + -2.0 2,709,197 + +1.1 2,709,197 + -1.8 2,709,205 - -1.0 2,709,205 - +0.0 2,709,207 + -2.8 2,709,208 + -2.5 2,709,213 + +0.8 2,709,213 + +2.2 2,709,215 - +2.7 2,709,216 - +1.0 2,709,216 - +1.4 2,709,221 - +0.9 2,709,221 - +1.9 2,709,222 + -1.3 2,709,223 + -3.2 2,709,230 - -2.8 2,709,230 - -1.8 2,709,231 - -3.3
Or see this region's nucleotide sequence