Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02535

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02533 and MPMX20_02534 are separated by 130 nucleotidesMPMX20_02534 and MPMX20_02535 are separated by 38 nucleotidesMPMX20_02535 and MPMX20_02536 overlap by 11 nucleotides MPMX20_02533: MPMX20_02533 - cAMP-activated global transcriptional regulator CRP, at 2,672,715 to 2,673,380 _02533 MPMX20_02534: MPMX20_02534 - hypothetical protein, at 2,673,511 to 2,673,645 _02534 MPMX20_02535: MPMX20_02535 - Pyrimidine-specific ribonucleoside hydrolase RihB, at 2,673,684 to 2,674,649 _02535 MPMX20_02536: MPMX20_02536 - Adenosine deaminase, at 2,674,639 to 2,675,622 _02536 Position (kb) 2673 2674 2675Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2673.781 kb on + strand, within MPMX20_02535at 2673.805 kb on - strand, within MPMX20_02535at 2674.315 kb on - strand, within MPMX20_02535at 2674.401 kb on + strand, within MPMX20_02535at 2674.412 kb on + strand, within MPMX20_02535at 2674.844 kb on - strand, within MPMX20_02536at 2674.859 kb on - strand, within MPMX20_02536at 2675.335 kb on + strand, within MPMX20_02536

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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2,673,781 + MPMX20_02535 0.10 +1.5
2,673,805 - MPMX20_02535 0.13 +3.0
2,674,315 - MPMX20_02535 0.65 -2.1
2,674,401 + MPMX20_02535 0.74 -1.7
2,674,412 + MPMX20_02535 0.75 -0.3
2,674,844 - MPMX20_02536 0.21 -0.8
2,674,859 - MPMX20_02536 0.22 +4.3
2,675,335 + MPMX20_02536 0.71 -0.6

Or see this region's nucleotide sequence