Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02517 and MPMX20_02518 are separated by 215 nucleotides MPMX20_02518 and MPMX20_02519 are separated by 38 nucleotides MPMX20_02519 and MPMX20_02520 are separated by 139 nucleotides MPMX20_02520 and MPMX20_02521 overlap by 4 nucleotides
MPMX20_02517: MPMX20_02517 - Glycine cleavage system transcriptional activator, at 2,659,896 to 2,660,810
_02517
MPMX20_02518: MPMX20_02518 - hypothetical protein, at 2,661,026 to 2,661,307
_02518
MPMX20_02519: MPMX20_02519 - hypothetical protein, at 2,661,346 to 2,661,690
_02519
MPMX20_02520: MPMX20_02520 - hypothetical protein, at 2,661,830 to 2,662,417
_02520
MPMX20_02521: MPMX20_02521 - hypothetical protein, at 2,662,414 to 2,663,517
_02521
Position (kb)
2661
2662 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2660.397 kb on + strand, within MPMX20_02517 at 2660.397 kb on + strand, within MPMX20_02517 at 2660.397 kb on + strand, within MPMX20_02517 at 2660.397 kb on + strand, within MPMX20_02517 at 2660.397 kb on + strand, within MPMX20_02517 at 2660.397 kb on + strand, within MPMX20_02517 at 2660.397 kb on + strand, within MPMX20_02517 at 2660.405 kb on - strand, within MPMX20_02517 at 2660.405 kb on - strand, within MPMX20_02517 at 2660.405 kb on - strand, within MPMX20_02517 at 2660.485 kb on + strand, within MPMX20_02517 at 2660.525 kb on + strand, within MPMX20_02517 at 2660.578 kb on - strand, within MPMX20_02517 at 2660.601 kb on + strand, within MPMX20_02517 at 2660.601 kb on + strand, within MPMX20_02517 at 2660.601 kb on + strand, within MPMX20_02517 at 2660.609 kb on - strand, within MPMX20_02517 at 2660.609 kb on - strand, within MPMX20_02517 at 2660.611 kb on + strand, within MPMX20_02517 at 2660.611 kb on + strand, within MPMX20_02517 at 2660.649 kb on - strand, within MPMX20_02517 at 2660.696 kb on - strand, within MPMX20_02517 at 2660.720 kb on + strand at 2660.735 kb on + strand at 2660.735 kb on + strand at 2660.743 kb on - strand at 2660.743 kb on - strand at 2660.773 kb on + strand at 2660.793 kb on + strand at 2660.811 kb on - strand at 2660.839 kb on + strand at 2660.840 kb on + strand at 2660.847 kb on - strand at 2660.848 kb on - strand at 2660.854 kb on + strand at 2660.912 kb on - strand at 2660.963 kb on + strand at 2660.968 kb on + strand at 2660.981 kb on - strand at 2660.998 kb on + strand at 2660.999 kb on + strand at 2660.999 kb on + strand at 2660.999 kb on + strand at 2660.999 kb on + strand at 2660.999 kb on + strand at 2660.999 kb on + strand at 2661.007 kb on - strand at 2661.007 kb on - strand at 2661.007 kb on - strand at 2661.007 kb on - strand at 2661.007 kb on - strand at 2661.007 kb on - strand at 2661.007 kb on - strand at 2661.007 kb on - strand at 2661.105 kb on + strand, within MPMX20_02518 at 2661.143 kb on - strand, within MPMX20_02518 at 2661.212 kb on + strand, within MPMX20_02518 at 2661.216 kb on - strand, within MPMX20_02518 at 2661.220 kb on - strand, within MPMX20_02518 at 2661.220 kb on - strand, within MPMX20_02518 at 2661.254 kb on + strand, within MPMX20_02518 at 2661.263 kb on + strand, within MPMX20_02518 at 2661.271 kb on - strand, within MPMX20_02518 at 2661.299 kb on + strand at 2661.332 kb on + strand at 2661.384 kb on + strand, within MPMX20_02519 at 2661.387 kb on - strand, within MPMX20_02519 at 2661.430 kb on + strand, within MPMX20_02519 at 2661.430 kb on + strand, within MPMX20_02519 at 2661.439 kb on - strand, within MPMX20_02519 at 2661.439 kb on - strand, within MPMX20_02519 at 2661.441 kb on + strand, within MPMX20_02519 at 2661.445 kb on + strand, within MPMX20_02519 at 2661.493 kb on - strand, within MPMX20_02519 at 2661.542 kb on + strand, within MPMX20_02519 at 2661.593 kb on - strand, within MPMX20_02519 at 2661.639 kb on + strand, within MPMX20_02519 at 2661.647 kb on - strand, within MPMX20_02519 at 2661.647 kb on - strand, within MPMX20_02519 at 2661.647 kb on - strand, within MPMX20_02519 at 2661.683 kb on + strand at 2661.685 kb on + strand at 2661.785 kb on - strand at 2661.872 kb on - strand at 2661.913 kb on - strand, within MPMX20_02520 at 2661.918 kb on - strand, within MPMX20_02520 at 2661.943 kb on + strand, within MPMX20_02520 at 2661.951 kb on - strand, within MPMX20_02520 at 2661.951 kb on - strand, within MPMX20_02520 at 2661.984 kb on + strand, within MPMX20_02520 at 2661.992 kb on - strand, within MPMX20_02520 at 2662.007 kb on - strand, within MPMX20_02520 at 2662.029 kb on + strand, within MPMX20_02520 at 2662.036 kb on + strand, within MPMX20_02520 at 2662.144 kb on + strand, within MPMX20_02520 at 2662.213 kb on + strand, within MPMX20_02520 at 2662.331 kb on + strand, within MPMX20_02520 at 2662.389 kb on - strand at 2662.393 kb on - strand at 2662.397 kb on - strand at 2662.399 kb on + strand at 2662.402 kb on - strand at 2662.407 kb on - strand at 2662.422 kb on - strand at 2662.424 kb on + strand at 2662.452 kb on - strand at 2662.474 kb on - strand at 2662.481 kb on - strand at 2662.551 kb on - strand, within MPMX20_02521 at 2662.584 kb on + strand, within MPMX20_02521 at 2662.584 kb on - strand, within MPMX20_02521 at 2662.598 kb on + strand, within MPMX20_02521 at 2662.663 kb on + strand, within MPMX20_02521
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 2,660,397 + MPMX20_02517 0.55 -1.6 2,660,397 + MPMX20_02517 0.55 +2.9 2,660,397 + MPMX20_02517 0.55 -2.4 2,660,397 + MPMX20_02517 0.55 +2.5 2,660,397 + MPMX20_02517 0.55 -1.4 2,660,397 + MPMX20_02517 0.55 -0.8 2,660,397 + MPMX20_02517 0.55 +0.5 2,660,405 - MPMX20_02517 0.56 +1.0 2,660,405 - MPMX20_02517 0.56 +2.0 2,660,405 - MPMX20_02517 0.56 -1.9 2,660,485 + MPMX20_02517 0.64 -0.3 2,660,525 + MPMX20_02517 0.69 -4.2 2,660,578 - MPMX20_02517 0.75 +2.0 2,660,601 + MPMX20_02517 0.77 +1.5 2,660,601 + MPMX20_02517 0.77 +1.4 2,660,601 + MPMX20_02517 0.77 +1.8 2,660,609 - MPMX20_02517 0.78 +3.0 2,660,609 - MPMX20_02517 0.78 -1.1 2,660,611 + MPMX20_02517 0.78 -0.8 2,660,611 + MPMX20_02517 0.78 +1.7 2,660,649 - MPMX20_02517 0.82 -3.4 2,660,696 - MPMX20_02517 0.87 +2.7 2,660,720 + +1.6 2,660,735 + +3.2 2,660,735 + -2.0 2,660,743 - +0.8 2,660,743 - +1.0 2,660,773 + +0.3 2,660,793 + +0.0 2,660,811 - +1.7 2,660,839 + -3.0 2,660,840 + -0.3 2,660,847 - -2.8 2,660,848 - -3.4 2,660,854 + -1.1 2,660,912 - -0.9 2,660,963 + +2.3 2,660,968 + -0.3 2,660,981 - -1.3 2,660,998 + -2.4 2,660,999 + +2.7 2,660,999 + -0.3 2,660,999 + +0.8 2,660,999 + -3.2 2,660,999 + -2.6 2,660,999 + +1.7 2,661,007 - -0.1 2,661,007 - -2.7 2,661,007 - -2.2 2,661,007 - +0.7 2,661,007 - -0.7 2,661,007 - +2.2 2,661,007 - +2.1 2,661,007 - -2.1 2,661,105 + MPMX20_02518 0.28 -3.5 2,661,143 - MPMX20_02518 0.41 +1.5 2,661,212 + MPMX20_02518 0.66 -1.0 2,661,216 - MPMX20_02518 0.67 +2.1 2,661,220 - MPMX20_02518 0.69 -1.7 2,661,220 - MPMX20_02518 0.69 -1.0 2,661,254 + MPMX20_02518 0.81 -0.3 2,661,263 + MPMX20_02518 0.84 +1.6 2,661,271 - MPMX20_02518 0.87 -2.0 2,661,299 + +0.6 2,661,332 + +0.5 2,661,384 + MPMX20_02519 0.11 +0.0 2,661,387 - MPMX20_02519 0.12 -3.0 2,661,430 + MPMX20_02519 0.24 +0.9 2,661,430 + MPMX20_02519 0.24 +2.7 2,661,439 - MPMX20_02519 0.27 +0.2 2,661,439 - MPMX20_02519 0.27 +2.2 2,661,441 + MPMX20_02519 0.28 +0.6 2,661,445 + MPMX20_02519 0.29 +1.0 2,661,493 - MPMX20_02519 0.43 -2.5 2,661,542 + MPMX20_02519 0.57 +1.9 2,661,593 - MPMX20_02519 0.72 -1.0 2,661,639 + MPMX20_02519 0.85 -0.3 2,661,647 - MPMX20_02519 0.87 +1.7 2,661,647 - MPMX20_02519 0.87 -2.8 2,661,647 - MPMX20_02519 0.87 +3.4 2,661,683 + +3.1 2,661,685 + -3.2 2,661,785 - -3.4 2,661,872 - -3.5 2,661,913 - MPMX20_02520 0.14 -2.2 2,661,918 - MPMX20_02520 0.15 +0.9 2,661,943 + MPMX20_02520 0.19 +1.0 2,661,951 - MPMX20_02520 0.21 -3.3 2,661,951 - MPMX20_02520 0.21 -3.8 2,661,984 + MPMX20_02520 0.26 +1.8 2,661,992 - MPMX20_02520 0.28 +1.5 2,662,007 - MPMX20_02520 0.30 -0.2 2,662,029 + MPMX20_02520 0.34 -3.5 2,662,036 + MPMX20_02520 0.35 +0.3 2,662,144 + MPMX20_02520 0.53 -3.1 2,662,213 + MPMX20_02520 0.65 +3.3 2,662,331 + MPMX20_02520 0.85 -4.0 2,662,389 - -2.8 2,662,393 - +1.0 2,662,397 - +0.5 2,662,399 + -2.1 2,662,402 - +0.0 2,662,407 - +1.0 2,662,422 - -0.6 2,662,424 + +2.8 2,662,452 - -3.1 2,662,474 - +0.3 2,662,481 - -1.7 2,662,551 - MPMX20_02521 0.12 -2.4 2,662,584 + MPMX20_02521 0.15 -0.0 2,662,584 - MPMX20_02521 0.15 +2.3 2,662,598 + MPMX20_02521 0.17 +0.9 2,662,663 + MPMX20_02521 0.23 -2.9
Or see this region's nucleotide sequence