Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02519

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02517 and MPMX20_02518 are separated by 215 nucleotidesMPMX20_02518 and MPMX20_02519 are separated by 38 nucleotidesMPMX20_02519 and MPMX20_02520 are separated by 139 nucleotidesMPMX20_02520 and MPMX20_02521 overlap by 4 nucleotides MPMX20_02517: MPMX20_02517 - Glycine cleavage system transcriptional activator, at 2,659,896 to 2,660,810 _02517 MPMX20_02518: MPMX20_02518 - hypothetical protein, at 2,661,026 to 2,661,307 _02518 MPMX20_02519: MPMX20_02519 - hypothetical protein, at 2,661,346 to 2,661,690 _02519 MPMX20_02520: MPMX20_02520 - hypothetical protein, at 2,661,830 to 2,662,417 _02520 MPMX20_02521: MPMX20_02521 - hypothetical protein, at 2,662,414 to 2,663,517 _02521 Position (kb) 2661 2662Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2660.397 kb on + strand, within MPMX20_02517at 2660.397 kb on + strand, within MPMX20_02517at 2660.397 kb on + strand, within MPMX20_02517at 2660.397 kb on + strand, within MPMX20_02517at 2660.397 kb on + strand, within MPMX20_02517at 2660.397 kb on + strand, within MPMX20_02517at 2660.397 kb on + strand, within MPMX20_02517at 2660.405 kb on - strand, within MPMX20_02517at 2660.405 kb on - strand, within MPMX20_02517at 2660.405 kb on - strand, within MPMX20_02517at 2660.485 kb on + strand, within MPMX20_02517at 2660.525 kb on + strand, within MPMX20_02517at 2660.578 kb on - strand, within MPMX20_02517at 2660.601 kb on + strand, within MPMX20_02517at 2660.601 kb on + strand, within MPMX20_02517at 2660.601 kb on + strand, within MPMX20_02517at 2660.609 kb on - strand, within MPMX20_02517at 2660.609 kb on - strand, within MPMX20_02517at 2660.611 kb on + strand, within MPMX20_02517at 2660.611 kb on + strand, within MPMX20_02517at 2660.649 kb on - strand, within MPMX20_02517at 2660.696 kb on - strand, within MPMX20_02517at 2660.720 kb on + strandat 2660.735 kb on + strandat 2660.735 kb on + strandat 2660.743 kb on - strandat 2660.743 kb on - strandat 2660.773 kb on + strandat 2660.793 kb on + strandat 2660.811 kb on - strandat 2660.839 kb on + strandat 2660.840 kb on + strandat 2660.847 kb on - strandat 2660.848 kb on - strandat 2660.854 kb on + strandat 2660.912 kb on - strandat 2660.963 kb on + strandat 2660.968 kb on + strandat 2660.981 kb on - strandat 2660.998 kb on + strandat 2660.999 kb on + strandat 2660.999 kb on + strandat 2660.999 kb on + strandat 2660.999 kb on + strandat 2660.999 kb on + strandat 2660.999 kb on + strandat 2661.007 kb on - strandat 2661.007 kb on - strandat 2661.007 kb on - strandat 2661.007 kb on - strandat 2661.007 kb on - strandat 2661.007 kb on - strandat 2661.007 kb on - strandat 2661.007 kb on - strandat 2661.105 kb on + strand, within MPMX20_02518at 2661.143 kb on - strand, within MPMX20_02518at 2661.212 kb on + strand, within MPMX20_02518at 2661.216 kb on - strand, within MPMX20_02518at 2661.220 kb on - strand, within MPMX20_02518at 2661.220 kb on - strand, within MPMX20_02518at 2661.254 kb on + strand, within MPMX20_02518at 2661.263 kb on + strand, within MPMX20_02518at 2661.271 kb on - strand, within MPMX20_02518at 2661.299 kb on + strandat 2661.332 kb on + strandat 2661.384 kb on + strand, within MPMX20_02519at 2661.387 kb on - strand, within MPMX20_02519at 2661.430 kb on + strand, within MPMX20_02519at 2661.430 kb on + strand, within MPMX20_02519at 2661.439 kb on - strand, within MPMX20_02519at 2661.439 kb on - strand, within MPMX20_02519at 2661.441 kb on + strand, within MPMX20_02519at 2661.445 kb on + strand, within MPMX20_02519at 2661.493 kb on - strand, within MPMX20_02519at 2661.542 kb on + strand, within MPMX20_02519at 2661.593 kb on - strand, within MPMX20_02519at 2661.639 kb on + strand, within MPMX20_02519at 2661.647 kb on - strand, within MPMX20_02519at 2661.647 kb on - strand, within MPMX20_02519at 2661.647 kb on - strand, within MPMX20_02519at 2661.683 kb on + strandat 2661.685 kb on + strandat 2661.785 kb on - strandat 2661.872 kb on - strandat 2661.913 kb on - strand, within MPMX20_02520at 2661.918 kb on - strand, within MPMX20_02520at 2661.943 kb on + strand, within MPMX20_02520at 2661.951 kb on - strand, within MPMX20_02520at 2661.951 kb on - strand, within MPMX20_02520at 2661.984 kb on + strand, within MPMX20_02520at 2661.992 kb on - strand, within MPMX20_02520at 2662.007 kb on - strand, within MPMX20_02520at 2662.029 kb on + strand, within MPMX20_02520at 2662.036 kb on + strand, within MPMX20_02520at 2662.144 kb on + strand, within MPMX20_02520at 2662.213 kb on + strand, within MPMX20_02520at 2662.331 kb on + strand, within MPMX20_02520at 2662.389 kb on - strandat 2662.393 kb on - strandat 2662.397 kb on - strandat 2662.399 kb on + strandat 2662.402 kb on - strandat 2662.407 kb on - strandat 2662.422 kb on - strandat 2662.424 kb on + strandat 2662.452 kb on - strandat 2662.474 kb on - strandat 2662.481 kb on - strandat 2662.551 kb on - strand, within MPMX20_02521at 2662.584 kb on + strand, within MPMX20_02521at 2662.584 kb on - strand, within MPMX20_02521at 2662.598 kb on + strand, within MPMX20_02521at 2662.663 kb on + strand, within MPMX20_02521

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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2,660,397 + MPMX20_02517 0.55 -1.6
2,660,397 + MPMX20_02517 0.55 +2.9
2,660,397 + MPMX20_02517 0.55 -2.4
2,660,397 + MPMX20_02517 0.55 +2.5
2,660,397 + MPMX20_02517 0.55 -1.4
2,660,397 + MPMX20_02517 0.55 -0.8
2,660,397 + MPMX20_02517 0.55 +0.5
2,660,405 - MPMX20_02517 0.56 +1.0
2,660,405 - MPMX20_02517 0.56 +2.0
2,660,405 - MPMX20_02517 0.56 -1.9
2,660,485 + MPMX20_02517 0.64 -0.3
2,660,525 + MPMX20_02517 0.69 -4.2
2,660,578 - MPMX20_02517 0.75 +2.0
2,660,601 + MPMX20_02517 0.77 +1.5
2,660,601 + MPMX20_02517 0.77 +1.4
2,660,601 + MPMX20_02517 0.77 +1.8
2,660,609 - MPMX20_02517 0.78 +3.0
2,660,609 - MPMX20_02517 0.78 -1.1
2,660,611 + MPMX20_02517 0.78 -0.8
2,660,611 + MPMX20_02517 0.78 +1.7
2,660,649 - MPMX20_02517 0.82 -3.4
2,660,696 - MPMX20_02517 0.87 +2.7
2,660,720 + +1.6
2,660,735 + +3.2
2,660,735 + -2.0
2,660,743 - +0.8
2,660,743 - +1.0
2,660,773 + +0.3
2,660,793 + +0.0
2,660,811 - +1.7
2,660,839 + -3.0
2,660,840 + -0.3
2,660,847 - -2.8
2,660,848 - -3.4
2,660,854 + -1.1
2,660,912 - -0.9
2,660,963 + +2.3
2,660,968 + -0.3
2,660,981 - -1.3
2,660,998 + -2.4
2,660,999 + +2.7
2,660,999 + -0.3
2,660,999 + +0.8
2,660,999 + -3.2
2,660,999 + -2.6
2,660,999 + +1.7
2,661,007 - -0.1
2,661,007 - -2.7
2,661,007 - -2.2
2,661,007 - +0.7
2,661,007 - -0.7
2,661,007 - +2.2
2,661,007 - +2.1
2,661,007 - -2.1
2,661,105 + MPMX20_02518 0.28 -3.5
2,661,143 - MPMX20_02518 0.41 +1.5
2,661,212 + MPMX20_02518 0.66 -1.0
2,661,216 - MPMX20_02518 0.67 +2.1
2,661,220 - MPMX20_02518 0.69 -1.7
2,661,220 - MPMX20_02518 0.69 -1.0
2,661,254 + MPMX20_02518 0.81 -0.3
2,661,263 + MPMX20_02518 0.84 +1.6
2,661,271 - MPMX20_02518 0.87 -2.0
2,661,299 + +0.6
2,661,332 + +0.5
2,661,384 + MPMX20_02519 0.11 +0.0
2,661,387 - MPMX20_02519 0.12 -3.0
2,661,430 + MPMX20_02519 0.24 +0.9
2,661,430 + MPMX20_02519 0.24 +2.7
2,661,439 - MPMX20_02519 0.27 +0.2
2,661,439 - MPMX20_02519 0.27 +2.2
2,661,441 + MPMX20_02519 0.28 +0.6
2,661,445 + MPMX20_02519 0.29 +1.0
2,661,493 - MPMX20_02519 0.43 -2.5
2,661,542 + MPMX20_02519 0.57 +1.9
2,661,593 - MPMX20_02519 0.72 -1.0
2,661,639 + MPMX20_02519 0.85 -0.3
2,661,647 - MPMX20_02519 0.87 +1.7
2,661,647 - MPMX20_02519 0.87 -2.8
2,661,647 - MPMX20_02519 0.87 +3.4
2,661,683 + +3.1
2,661,685 + -3.2
2,661,785 - -3.4
2,661,872 - -3.5
2,661,913 - MPMX20_02520 0.14 -2.2
2,661,918 - MPMX20_02520 0.15 +0.9
2,661,943 + MPMX20_02520 0.19 +1.0
2,661,951 - MPMX20_02520 0.21 -3.3
2,661,951 - MPMX20_02520 0.21 -3.8
2,661,984 + MPMX20_02520 0.26 +1.8
2,661,992 - MPMX20_02520 0.28 +1.5
2,662,007 - MPMX20_02520 0.30 -0.2
2,662,029 + MPMX20_02520 0.34 -3.5
2,662,036 + MPMX20_02520 0.35 +0.3
2,662,144 + MPMX20_02520 0.53 -3.1
2,662,213 + MPMX20_02520 0.65 +3.3
2,662,331 + MPMX20_02520 0.85 -4.0
2,662,389 - -2.8
2,662,393 - +1.0
2,662,397 - +0.5
2,662,399 + -2.1
2,662,402 - +0.0
2,662,407 - +1.0
2,662,422 - -0.6
2,662,424 + +2.8
2,662,452 - -3.1
2,662,474 - +0.3
2,662,481 - -1.7
2,662,551 - MPMX20_02521 0.12 -2.4
2,662,584 + MPMX20_02521 0.15 -0.0
2,662,584 - MPMX20_02521 0.15 +2.3
2,662,598 + MPMX20_02521 0.17 +0.9
2,662,663 + MPMX20_02521 0.23 -2.9

Or see this region's nucleotide sequence