Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02449 and MPMX20_02450 are separated by 185 nucleotides MPMX20_02450 and MPMX20_02451 overlap by 10 nucleotides
MPMX20_02449: MPMX20_02449 - Periplasmic murein peptide-binding protein, at 2,587,356 to 2,588,972
_02449
MPMX20_02450: MPMX20_02450 - Murein peptide amidase A, at 2,589,158 to 2,589,871
_02450
MPMX20_02451: MPMX20_02451 - L-Ala-D/L-Glu epimerase, at 2,589,862 to 2,590,827
_02451
Position (kb)
2589
2590 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2588.177 kb on - strand, within MPMX20_02449 at 2588.260 kb on + strand, within MPMX20_02449 at 2588.260 kb on + strand, within MPMX20_02449 at 2588.260 kb on + strand, within MPMX20_02449 at 2588.268 kb on - strand, within MPMX20_02449 at 2588.268 kb on - strand, within MPMX20_02449 at 2588.268 kb on - strand, within MPMX20_02449 at 2588.272 kb on + strand, within MPMX20_02449 at 2588.272 kb on + strand, within MPMX20_02449 at 2588.284 kb on + strand, within MPMX20_02449 at 2588.292 kb on - strand, within MPMX20_02449 at 2588.366 kb on - strand, within MPMX20_02449 at 2588.367 kb on + strand, within MPMX20_02449 at 2588.383 kb on - strand, within MPMX20_02449 at 2588.452 kb on + strand, within MPMX20_02449 at 2588.460 kb on - strand, within MPMX20_02449 at 2588.518 kb on + strand, within MPMX20_02449 at 2588.680 kb on - strand, within MPMX20_02449 at 2588.686 kb on + strand, within MPMX20_02449 at 2588.767 kb on + strand, within MPMX20_02449 at 2588.782 kb on + strand, within MPMX20_02449 at 2588.842 kb on + strand at 2588.842 kb on + strand at 2588.842 kb on + strand at 2588.850 kb on - strand at 2588.850 kb on - strand at 2588.859 kb on - strand at 2588.887 kb on - strand at 2588.889 kb on - strand at 2588.889 kb on - strand at 2588.905 kb on + strand at 2588.905 kb on + strand at 2588.913 kb on - strand at 2588.915 kb on - strand at 2588.926 kb on + strand at 2588.931 kb on + strand at 2588.939 kb on + strand at 2588.939 kb on + strand at 2588.939 kb on + strand at 2588.939 kb on + strand at 2588.944 kb on + strand at 2588.944 kb on + strand at 2588.944 kb on + strand at 2588.944 kb on + strand at 2588.944 kb on + strand at 2588.944 kb on + strand at 2588.944 kb on + strand at 2588.947 kb on - strand at 2589.120 kb on - strand at 2589.175 kb on - strand at 2589.187 kb on - strand at 2589.189 kb on + strand at 2589.204 kb on + strand at 2589.204 kb on + strand at 2589.204 kb on + strand at 2589.204 kb on + strand at 2589.204 kb on + strand at 2589.212 kb on + strand at 2589.212 kb on - strand at 2589.212 kb on - strand at 2589.212 kb on - strand at 2589.212 kb on - strand at 2589.222 kb on - strand at 2589.318 kb on + strand, within MPMX20_02450 at 2589.342 kb on - strand, within MPMX20_02450 at 2589.351 kb on + strand, within MPMX20_02450 at 2589.351 kb on + strand, within MPMX20_02450 at 2589.371 kb on - strand, within MPMX20_02450 at 2589.405 kb on + strand, within MPMX20_02450 at 2589.431 kb on - strand, within MPMX20_02450 at 2589.520 kb on - strand, within MPMX20_02450 at 2589.578 kb on - strand, within MPMX20_02450 at 2589.660 kb on + strand, within MPMX20_02450 at 2589.713 kb on + strand, within MPMX20_02450 at 2589.729 kb on + strand, within MPMX20_02450 at 2589.729 kb on + strand, within MPMX20_02450 at 2589.737 kb on - strand, within MPMX20_02450 at 2589.801 kb on + strand at 2589.814 kb on - strand at 2589.846 kb on - strand at 2589.905 kb on - strand at 2589.989 kb on + strand, within MPMX20_02451 at 2589.997 kb on + strand, within MPMX20_02451 at 2589.997 kb on - strand, within MPMX20_02451 at 2589.997 kb on - strand, within MPMX20_02451 at 2589.997 kb on - strand, within MPMX20_02451 at 2589.999 kb on + strand, within MPMX20_02451 at 2589.999 kb on + strand, within MPMX20_02451 at 2589.999 kb on + strand, within MPMX20_02451 at 2589.999 kb on + strand, within MPMX20_02451 at 2589.999 kb on + strand, within MPMX20_02451 at 2589.999 kb on + strand, within MPMX20_02451 at 2589.999 kb on + strand, within MPMX20_02451 at 2590.007 kb on - strand, within MPMX20_02451 at 2590.007 kb on - strand, within MPMX20_02451 at 2590.007 kb on - strand, within MPMX20_02451 at 2590.024 kb on + strand, within MPMX20_02451 at 2590.032 kb on - strand, within MPMX20_02451 at 2590.123 kb on + strand, within MPMX20_02451 at 2590.140 kb on + strand, within MPMX20_02451 at 2590.140 kb on + strand, within MPMX20_02451 at 2590.162 kb on + strand, within MPMX20_02451 at 2590.196 kb on + strand, within MPMX20_02451 at 2590.204 kb on - strand, within MPMX20_02451 at 2590.251 kb on + strand, within MPMX20_02451 at 2590.267 kb on + strand, within MPMX20_02451 at 2590.273 kb on + strand, within MPMX20_02451 at 2590.280 kb on - strand, within MPMX20_02451 at 2590.326 kb on - strand, within MPMX20_02451 at 2590.328 kb on + strand, within MPMX20_02451 at 2590.357 kb on + strand, within MPMX20_02451 at 2590.432 kb on + strand, within MPMX20_02451 at 2590.434 kb on + strand, within MPMX20_02451 at 2590.440 kb on - strand, within MPMX20_02451 at 2590.545 kb on - strand, within MPMX20_02451 at 2590.545 kb on - strand, within MPMX20_02451 at 2590.545 kb on - strand, within MPMX20_02451 at 2590.580 kb on + strand, within MPMX20_02451 at 2590.598 kb on - strand, within MPMX20_02451 at 2590.714 kb on - strand, within MPMX20_02451 at 2590.715 kb on - strand, within MPMX20_02451 at 2590.743 kb on + strand at 2590.812 kb on + strand at 2590.812 kb on + strand at 2590.812 kb on + strand at 2590.812 kb on + strand at 2590.812 kb on + strand at 2590.812 kb on + strand at 2590.820 kb on - strand at 2590.836 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 2,588,177 - MPMX20_02449 0.51 -3.4 2,588,260 + MPMX20_02449 0.56 +1.2 2,588,260 + MPMX20_02449 0.56 -0.2 2,588,260 + MPMX20_02449 0.56 -1.7 2,588,268 - MPMX20_02449 0.56 -2.8 2,588,268 - MPMX20_02449 0.56 +0.9 2,588,268 - MPMX20_02449 0.56 -3.4 2,588,272 + MPMX20_02449 0.57 -0.9 2,588,272 + MPMX20_02449 0.57 -1.1 2,588,284 + MPMX20_02449 0.57 +2.2 2,588,292 - MPMX20_02449 0.58 +2.1 2,588,366 - MPMX20_02449 0.62 -0.5 2,588,367 + MPMX20_02449 0.63 +1.5 2,588,383 - MPMX20_02449 0.64 -1.4 2,588,452 + MPMX20_02449 0.68 +3.1 2,588,460 - MPMX20_02449 0.68 -3.1 2,588,518 + MPMX20_02449 0.72 +2.2 2,588,680 - MPMX20_02449 0.82 +0.8 2,588,686 + MPMX20_02449 0.82 -0.6 2,588,767 + MPMX20_02449 0.87 -1.1 2,588,782 + MPMX20_02449 0.88 -0.7 2,588,842 + +0.6 2,588,842 + +0.5 2,588,842 + -1.8 2,588,850 - +0.5 2,588,850 - -3.1 2,588,859 - -3.5 2,588,887 - +3.0 2,588,889 - +0.1 2,588,889 - +0.1 2,588,905 + -0.7 2,588,905 + +3.2 2,588,913 - +1.3 2,588,915 - +2.0 2,588,926 + +1.1 2,588,931 + +0.1 2,588,939 + -0.9 2,588,939 + -2.7 2,588,939 + -3.1 2,588,939 + -2.3 2,588,944 + -2.9 2,588,944 + -2.9 2,588,944 + +3.1 2,588,944 + -2.2 2,588,944 + +0.2 2,588,944 + -0.9 2,588,944 + -1.4 2,588,947 - -0.6 2,589,120 - -0.7 2,589,175 - -1.7 2,589,187 - -2.4 2,589,189 + -2.4 2,589,204 + -2.6 2,589,204 + +1.0 2,589,204 + -2.3 2,589,204 + -2.6 2,589,204 + +0.1 2,589,212 + -1.2 2,589,212 - +3.0 2,589,212 - -1.5 2,589,212 - +1.8 2,589,212 - +0.5 2,589,222 - +1.1 2,589,318 + MPMX20_02450 0.22 -0.2 2,589,342 - MPMX20_02450 0.26 +1.8 2,589,351 + MPMX20_02450 0.27 -2.5 2,589,351 + MPMX20_02450 0.27 +1.9 2,589,371 - MPMX20_02450 0.30 +2.4 2,589,405 + MPMX20_02450 0.35 -2.5 2,589,431 - MPMX20_02450 0.38 -3.2 2,589,520 - MPMX20_02450 0.51 +2.4 2,589,578 - MPMX20_02450 0.59 -1.6 2,589,660 + MPMX20_02450 0.70 -1.4 2,589,713 + MPMX20_02450 0.78 -2.2 2,589,729 + MPMX20_02450 0.80 +2.8 2,589,729 + MPMX20_02450 0.80 +2.0 2,589,737 - MPMX20_02450 0.81 -1.2 2,589,801 + +1.8 2,589,814 - +2.1 2,589,846 - +1.9 2,589,905 - -1.4 2,589,989 + MPMX20_02451 0.13 -2.9 2,589,997 + MPMX20_02451 0.14 +0.8 2,589,997 - MPMX20_02451 0.14 +1.5 2,589,997 - MPMX20_02451 0.14 -1.2 2,589,997 - MPMX20_02451 0.14 +1.2 2,589,999 + MPMX20_02451 0.14 -1.9 2,589,999 + MPMX20_02451 0.14 +1.5 2,589,999 + MPMX20_02451 0.14 +0.3 2,589,999 + MPMX20_02451 0.14 -0.2 2,589,999 + MPMX20_02451 0.14 +2.9 2,589,999 + MPMX20_02451 0.14 -2.5 2,589,999 + MPMX20_02451 0.14 -1.8 2,590,007 - MPMX20_02451 0.15 +2.6 2,590,007 - MPMX20_02451 0.15 -1.2 2,590,007 - MPMX20_02451 0.15 -2.0 2,590,024 + MPMX20_02451 0.17 -0.5 2,590,032 - MPMX20_02451 0.18 +0.5 2,590,123 + MPMX20_02451 0.27 +0.1 2,590,140 + MPMX20_02451 0.29 -2.0 2,590,140 + MPMX20_02451 0.29 -1.9 2,590,162 + MPMX20_02451 0.31 +2.3 2,590,196 + MPMX20_02451 0.35 +0.1 2,590,204 - MPMX20_02451 0.35 -2.4 2,590,251 + MPMX20_02451 0.40 -1.7 2,590,267 + MPMX20_02451 0.42 +1.7 2,590,273 + MPMX20_02451 0.43 -1.2 2,590,280 - MPMX20_02451 0.43 -3.1 2,590,326 - MPMX20_02451 0.48 +1.7 2,590,328 + MPMX20_02451 0.48 +1.6 2,590,357 + MPMX20_02451 0.51 -1.1 2,590,432 + MPMX20_02451 0.59 +1.1 2,590,434 + MPMX20_02451 0.59 -1.9 2,590,440 - MPMX20_02451 0.60 +1.5 2,590,545 - MPMX20_02451 0.71 -2.2 2,590,545 - MPMX20_02451 0.71 +2.0 2,590,545 - MPMX20_02451 0.71 -2.1 2,590,580 + MPMX20_02451 0.74 -3.0 2,590,598 - MPMX20_02451 0.76 -1.5 2,590,714 - MPMX20_02451 0.88 -0.6 2,590,715 - MPMX20_02451 0.88 -3.3 2,590,743 + +1.6 2,590,812 + -0.7 2,590,812 + -2.2 2,590,812 + +0.8 2,590,812 + -2.6 2,590,812 + -2.5 2,590,812 + -1.9 2,590,820 - -1.7 2,590,836 + +1.1
Or see this region's nucleotide sequence