Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02441 and MPMX20_02442 are separated by 27 nucleotides MPMX20_02442 and MPMX20_02443 are separated by 274 nucleotides
MPMX20_02441: MPMX20_02441 - ATP-dependent RNA helicase DbpA, at 2,577,312 to 2,578,685
_02441
MPMX20_02442: MPMX20_02442 - hypothetical protein, at 2,578,713 to 2,578,895
_02442
MPMX20_02443: MPMX20_02443 - Zinc transport protein ZntB, at 2,579,170 to 2,580,153
_02443
Position (kb)
2578
2579 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2577.760 kb on - strand, within MPMX20_02441 at 2577.885 kb on + strand, within MPMX20_02441 at 2577.890 kb on + strand, within MPMX20_02441 at 2577.890 kb on + strand, within MPMX20_02441 at 2577.890 kb on + strand, within MPMX20_02441 at 2577.890 kb on + strand, within MPMX20_02441 at 2577.891 kb on - strand, within MPMX20_02441 at 2577.893 kb on - strand, within MPMX20_02441 at 2577.898 kb on - strand, within MPMX20_02441 at 2577.898 kb on - strand, within MPMX20_02441 at 2577.915 kb on - strand, within MPMX20_02441 at 2577.968 kb on + strand, within MPMX20_02441 at 2577.972 kb on - strand, within MPMX20_02441 at 2578.060 kb on - strand, within MPMX20_02441 at 2578.118 kb on + strand, within MPMX20_02441 at 2578.118 kb on + strand, within MPMX20_02441 at 2578.123 kb on + strand, within MPMX20_02441 at 2578.126 kb on - strand, within MPMX20_02441 at 2578.126 kb on - strand, within MPMX20_02441 at 2578.209 kb on - strand, within MPMX20_02441 at 2578.228 kb on + strand, within MPMX20_02441 at 2578.236 kb on - strand, within MPMX20_02441 at 2578.465 kb on - strand, within MPMX20_02441 at 2578.479 kb on - strand, within MPMX20_02441 at 2578.548 kb on - strand at 2578.567 kb on - strand at 2578.704 kb on + strand at 2578.720 kb on + strand at 2578.728 kb on - strand at 2578.784 kb on + strand, within MPMX20_02442 at 2578.797 kb on - strand, within MPMX20_02442 at 2578.797 kb on - strand, within MPMX20_02442 at 2578.797 kb on - strand, within MPMX20_02442 at 2578.816 kb on - strand, within MPMX20_02442 at 2578.846 kb on + strand, within MPMX20_02442 at 2578.855 kb on - strand, within MPMX20_02442 at 2578.856 kb on + strand, within MPMX20_02442 at 2578.856 kb on + strand, within MPMX20_02442 at 2578.882 kb on + strand at 2578.931 kb on - strand at 2578.969 kb on + strand at 2578.977 kb on - strand at 2578.997 kb on - strand at 2579.005 kb on - strand at 2579.022 kb on + strand at 2579.032 kb on + strand at 2579.037 kb on - strand at 2579.063 kb on + strand at 2579.063 kb on + strand at 2579.063 kb on + strand at 2579.063 kb on + strand at 2579.071 kb on - strand at 2579.071 kb on - strand at 2579.105 kb on - strand at 2579.247 kb on + strand at 2579.247 kb on + strand at 2579.255 kb on - strand at 2579.255 kb on - strand at 2579.256 kb on - strand at 2579.264 kb on - strand at 2579.285 kb on - strand, within MPMX20_02443 at 2579.291 kb on - strand, within MPMX20_02443 at 2579.293 kb on + strand, within MPMX20_02443 at 2579.301 kb on - strand, within MPMX20_02443 at 2579.307 kb on + strand, within MPMX20_02443 at 2579.346 kb on + strand, within MPMX20_02443 at 2579.375 kb on + strand, within MPMX20_02443 at 2579.458 kb on + strand, within MPMX20_02443 at 2579.526 kb on - strand, within MPMX20_02443 at 2579.575 kb on - strand, within MPMX20_02443 at 2579.640 kb on - strand, within MPMX20_02443 at 2579.748 kb on + strand, within MPMX20_02443 at 2579.814 kb on - strand, within MPMX20_02443 at 2579.855 kb on - strand, within MPMX20_02443 at 2579.859 kb on + strand, within MPMX20_02443 at 2579.867 kb on - strand, within MPMX20_02443 at 2579.876 kb on + strand, within MPMX20_02443
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 2,577,760 - MPMX20_02441 0.33 +1.5 2,577,885 + MPMX20_02441 0.42 +0.3 2,577,890 + MPMX20_02441 0.42 -1.4 2,577,890 + MPMX20_02441 0.42 -1.7 2,577,890 + MPMX20_02441 0.42 -0.7 2,577,890 + MPMX20_02441 0.42 -0.0 2,577,891 - MPMX20_02441 0.42 +0.0 2,577,893 - MPMX20_02441 0.42 +0.7 2,577,898 - MPMX20_02441 0.43 +2.0 2,577,898 - MPMX20_02441 0.43 -1.5 2,577,915 - MPMX20_02441 0.44 +1.6 2,577,968 + MPMX20_02441 0.48 +0.5 2,577,972 - MPMX20_02441 0.48 -1.1 2,578,060 - MPMX20_02441 0.54 -1.1 2,578,118 + MPMX20_02441 0.59 -2.9 2,578,118 + MPMX20_02441 0.59 +1.0 2,578,123 + MPMX20_02441 0.59 +0.2 2,578,126 - MPMX20_02441 0.59 -0.7 2,578,126 - MPMX20_02441 0.59 -2.7 2,578,209 - MPMX20_02441 0.65 +1.1 2,578,228 + MPMX20_02441 0.67 -1.4 2,578,236 - MPMX20_02441 0.67 -2.2 2,578,465 - MPMX20_02441 0.84 -2.4 2,578,479 - MPMX20_02441 0.85 -2.9 2,578,548 - -3.5 2,578,567 - -2.9 2,578,704 + +1.8 2,578,720 + +1.5 2,578,728 - -3.0 2,578,784 + MPMX20_02442 0.39 +2.0 2,578,797 - MPMX20_02442 0.46 -0.7 2,578,797 - MPMX20_02442 0.46 -1.4 2,578,797 - MPMX20_02442 0.46 +1.9 2,578,816 - MPMX20_02442 0.56 -0.9 2,578,846 + MPMX20_02442 0.73 -0.9 2,578,855 - MPMX20_02442 0.78 -0.7 2,578,856 + MPMX20_02442 0.78 +2.5 2,578,856 + MPMX20_02442 0.78 +4.1 2,578,882 + +2.4 2,578,931 - -2.6 2,578,969 + -3.2 2,578,977 - -3.5 2,578,997 - -3.1 2,579,005 - -2.9 2,579,022 + -1.4 2,579,032 + +0.1 2,579,037 - +1.8 2,579,063 + -1.9 2,579,063 + +2.1 2,579,063 + +2.0 2,579,063 + -1.8 2,579,071 - -0.8 2,579,071 - -2.2 2,579,105 - -1.9 2,579,247 + -1.4 2,579,247 + +2.5 2,579,255 - -1.9 2,579,255 - -2.4 2,579,256 - -1.4 2,579,264 - -2.7 2,579,285 - MPMX20_02443 0.12 +1.2 2,579,291 - MPMX20_02443 0.12 -3.5 2,579,293 + MPMX20_02443 0.12 -0.5 2,579,301 - MPMX20_02443 0.13 +0.3 2,579,307 + MPMX20_02443 0.14 -2.8 2,579,346 + MPMX20_02443 0.18 +1.1 2,579,375 + MPMX20_02443 0.21 +0.1 2,579,458 + MPMX20_02443 0.29 +1.4 2,579,526 - MPMX20_02443 0.36 +1.2 2,579,575 - MPMX20_02443 0.41 -3.4 2,579,640 - MPMX20_02443 0.48 -2.6 2,579,748 + MPMX20_02443 0.59 +1.9 2,579,814 - MPMX20_02443 0.65 +2.8 2,579,855 - MPMX20_02443 0.70 -1.6 2,579,859 + MPMX20_02443 0.70 +2.4 2,579,867 - MPMX20_02443 0.71 +1.2 2,579,876 + MPMX20_02443 0.72 +0.4
Or see this region's nucleotide sequence