Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02442

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02441 and MPMX20_02442 are separated by 27 nucleotidesMPMX20_02442 and MPMX20_02443 are separated by 274 nucleotides MPMX20_02441: MPMX20_02441 - ATP-dependent RNA helicase DbpA, at 2,577,312 to 2,578,685 _02441 MPMX20_02442: MPMX20_02442 - hypothetical protein, at 2,578,713 to 2,578,895 _02442 MPMX20_02443: MPMX20_02443 - Zinc transport protein ZntB, at 2,579,170 to 2,580,153 _02443 Position (kb) 2578 2579Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2577.760 kb on - strand, within MPMX20_02441at 2577.885 kb on + strand, within MPMX20_02441at 2577.890 kb on + strand, within MPMX20_02441at 2577.890 kb on + strand, within MPMX20_02441at 2577.890 kb on + strand, within MPMX20_02441at 2577.890 kb on + strand, within MPMX20_02441at 2577.891 kb on - strand, within MPMX20_02441at 2577.893 kb on - strand, within MPMX20_02441at 2577.898 kb on - strand, within MPMX20_02441at 2577.898 kb on - strand, within MPMX20_02441at 2577.915 kb on - strand, within MPMX20_02441at 2577.968 kb on + strand, within MPMX20_02441at 2577.972 kb on - strand, within MPMX20_02441at 2578.060 kb on - strand, within MPMX20_02441at 2578.118 kb on + strand, within MPMX20_02441at 2578.118 kb on + strand, within MPMX20_02441at 2578.123 kb on + strand, within MPMX20_02441at 2578.126 kb on - strand, within MPMX20_02441at 2578.126 kb on - strand, within MPMX20_02441at 2578.209 kb on - strand, within MPMX20_02441at 2578.228 kb on + strand, within MPMX20_02441at 2578.236 kb on - strand, within MPMX20_02441at 2578.465 kb on - strand, within MPMX20_02441at 2578.479 kb on - strand, within MPMX20_02441at 2578.548 kb on - strandat 2578.567 kb on - strandat 2578.704 kb on + strandat 2578.720 kb on + strandat 2578.728 kb on - strandat 2578.784 kb on + strand, within MPMX20_02442at 2578.797 kb on - strand, within MPMX20_02442at 2578.797 kb on - strand, within MPMX20_02442at 2578.797 kb on - strand, within MPMX20_02442at 2578.816 kb on - strand, within MPMX20_02442at 2578.846 kb on + strand, within MPMX20_02442at 2578.855 kb on - strand, within MPMX20_02442at 2578.856 kb on + strand, within MPMX20_02442at 2578.856 kb on + strand, within MPMX20_02442at 2578.882 kb on + strandat 2578.931 kb on - strandat 2578.969 kb on + strandat 2578.977 kb on - strandat 2578.997 kb on - strandat 2579.005 kb on - strandat 2579.022 kb on + strandat 2579.032 kb on + strandat 2579.037 kb on - strandat 2579.063 kb on + strandat 2579.063 kb on + strandat 2579.063 kb on + strandat 2579.063 kb on + strandat 2579.071 kb on - strandat 2579.071 kb on - strandat 2579.105 kb on - strandat 2579.247 kb on + strandat 2579.247 kb on + strandat 2579.255 kb on - strandat 2579.255 kb on - strandat 2579.256 kb on - strandat 2579.264 kb on - strandat 2579.285 kb on - strand, within MPMX20_02443at 2579.291 kb on - strand, within MPMX20_02443at 2579.293 kb on + strand, within MPMX20_02443at 2579.301 kb on - strand, within MPMX20_02443at 2579.307 kb on + strand, within MPMX20_02443at 2579.346 kb on + strand, within MPMX20_02443at 2579.375 kb on + strand, within MPMX20_02443at 2579.458 kb on + strand, within MPMX20_02443at 2579.526 kb on - strand, within MPMX20_02443at 2579.575 kb on - strand, within MPMX20_02443at 2579.640 kb on - strand, within MPMX20_02443at 2579.748 kb on + strand, within MPMX20_02443at 2579.814 kb on - strand, within MPMX20_02443at 2579.855 kb on - strand, within MPMX20_02443at 2579.859 kb on + strand, within MPMX20_02443at 2579.867 kb on - strand, within MPMX20_02443at 2579.876 kb on + strand, within MPMX20_02443

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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2,577,760 - MPMX20_02441 0.33 +1.5
2,577,885 + MPMX20_02441 0.42 +0.3
2,577,890 + MPMX20_02441 0.42 -1.4
2,577,890 + MPMX20_02441 0.42 -1.7
2,577,890 + MPMX20_02441 0.42 -0.7
2,577,890 + MPMX20_02441 0.42 -0.0
2,577,891 - MPMX20_02441 0.42 +0.0
2,577,893 - MPMX20_02441 0.42 +0.7
2,577,898 - MPMX20_02441 0.43 +2.0
2,577,898 - MPMX20_02441 0.43 -1.5
2,577,915 - MPMX20_02441 0.44 +1.6
2,577,968 + MPMX20_02441 0.48 +0.5
2,577,972 - MPMX20_02441 0.48 -1.1
2,578,060 - MPMX20_02441 0.54 -1.1
2,578,118 + MPMX20_02441 0.59 -2.9
2,578,118 + MPMX20_02441 0.59 +1.0
2,578,123 + MPMX20_02441 0.59 +0.2
2,578,126 - MPMX20_02441 0.59 -0.7
2,578,126 - MPMX20_02441 0.59 -2.7
2,578,209 - MPMX20_02441 0.65 +1.1
2,578,228 + MPMX20_02441 0.67 -1.4
2,578,236 - MPMX20_02441 0.67 -2.2
2,578,465 - MPMX20_02441 0.84 -2.4
2,578,479 - MPMX20_02441 0.85 -2.9
2,578,548 - -3.5
2,578,567 - -2.9
2,578,704 + +1.8
2,578,720 + +1.5
2,578,728 - -3.0
2,578,784 + MPMX20_02442 0.39 +2.0
2,578,797 - MPMX20_02442 0.46 -0.7
2,578,797 - MPMX20_02442 0.46 -1.4
2,578,797 - MPMX20_02442 0.46 +1.9
2,578,816 - MPMX20_02442 0.56 -0.9
2,578,846 + MPMX20_02442 0.73 -0.9
2,578,855 - MPMX20_02442 0.78 -0.7
2,578,856 + MPMX20_02442 0.78 +2.5
2,578,856 + MPMX20_02442 0.78 +4.1
2,578,882 + +2.4
2,578,931 - -2.6
2,578,969 + -3.2
2,578,977 - -3.5
2,578,997 - -3.1
2,579,005 - -2.9
2,579,022 + -1.4
2,579,032 + +0.1
2,579,037 - +1.8
2,579,063 + -1.9
2,579,063 + +2.1
2,579,063 + +2.0
2,579,063 + -1.8
2,579,071 - -0.8
2,579,071 - -2.2
2,579,105 - -1.9
2,579,247 + -1.4
2,579,247 + +2.5
2,579,255 - -1.9
2,579,255 - -2.4
2,579,256 - -1.4
2,579,264 - -2.7
2,579,285 - MPMX20_02443 0.12 +1.2
2,579,291 - MPMX20_02443 0.12 -3.5
2,579,293 + MPMX20_02443 0.12 -0.5
2,579,301 - MPMX20_02443 0.13 +0.3
2,579,307 + MPMX20_02443 0.14 -2.8
2,579,346 + MPMX20_02443 0.18 +1.1
2,579,375 + MPMX20_02443 0.21 +0.1
2,579,458 + MPMX20_02443 0.29 +1.4
2,579,526 - MPMX20_02443 0.36 +1.2
2,579,575 - MPMX20_02443 0.41 -3.4
2,579,640 - MPMX20_02443 0.48 -2.6
2,579,748 + MPMX20_02443 0.59 +1.9
2,579,814 - MPMX20_02443 0.65 +2.8
2,579,855 - MPMX20_02443 0.70 -1.6
2,579,859 + MPMX20_02443 0.70 +2.4
2,579,867 - MPMX20_02443 0.71 +1.2
2,579,876 + MPMX20_02443 0.72 +0.4

Or see this region's nucleotide sequence