Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02381 and MPMX20_02382 are separated by 79 nucleotides MPMX20_02382 and MPMX20_02383 are separated by 38 nucleotides
MPMX20_02381: MPMX20_02381 - Outer membrane porin protein OmpD, at 2,510,912 to 2,511,985
_02381
MPMX20_02382: MPMX20_02382 - hypothetical protein, at 2,512,065 to 2,512,523
_02382
MPMX20_02383: MPMX20_02383 - Methyl viologen resistance protein SmvA, at 2,512,562 to 2,514,049
_02383
Position (kb)
2512
2513 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 2511.076 kb on - strand, within MPMX20_02381 at 2511.129 kb on - strand, within MPMX20_02381 at 2511.136 kb on - strand, within MPMX20_02381 at 2511.173 kb on + strand, within MPMX20_02381 at 2511.288 kb on + strand, within MPMX20_02381 at 2511.319 kb on + strand, within MPMX20_02381 at 2511.321 kb on + strand, within MPMX20_02381 at 2511.327 kb on - strand, within MPMX20_02381 at 2511.340 kb on + strand, within MPMX20_02381 at 2511.415 kb on - strand, within MPMX20_02381 at 2511.420 kb on - strand, within MPMX20_02381 at 2511.422 kb on + strand, within MPMX20_02381 at 2511.430 kb on - strand, within MPMX20_02381 at 2511.435 kb on - strand, within MPMX20_02381 at 2511.477 kb on + strand, within MPMX20_02381 at 2511.477 kb on + strand, within MPMX20_02381 at 2511.487 kb on + strand, within MPMX20_02381 at 2511.495 kb on - strand, within MPMX20_02381 at 2511.495 kb on - strand, within MPMX20_02381 at 2511.519 kb on - strand, within MPMX20_02381 at 2511.529 kb on - strand, within MPMX20_02381 at 2511.585 kb on - strand, within MPMX20_02381 at 2511.612 kb on - strand, within MPMX20_02381 at 2511.646 kb on + strand, within MPMX20_02381 at 2511.668 kb on - strand, within MPMX20_02381 at 2511.721 kb on - strand, within MPMX20_02381 at 2511.729 kb on - strand, within MPMX20_02381 at 2511.735 kb on + strand, within MPMX20_02381 at 2511.791 kb on + strand, within MPMX20_02381 at 2511.859 kb on - strand, within MPMX20_02381 at 2511.871 kb on + strand, within MPMX20_02381 at 2512.089 kb on - strand at 2512.096 kb on + strand at 2512.145 kb on + strand, within MPMX20_02382 at 2512.147 kb on + strand, within MPMX20_02382 at 2512.147 kb on + strand, within MPMX20_02382 at 2512.147 kb on + strand, within MPMX20_02382 at 2512.211 kb on - strand, within MPMX20_02382 at 2512.234 kb on - strand, within MPMX20_02382 at 2512.311 kb on + strand, within MPMX20_02382 at 2512.355 kb on + strand, within MPMX20_02382 at 2512.398 kb on + strand, within MPMX20_02382 at 2512.526 kb on - strand at 2512.634 kb on + strand at 2512.634 kb on + strand at 2512.634 kb on + strand at 2512.634 kb on + strand at 2512.634 kb on + strand at 2512.634 kb on + strand at 2512.634 kb on + strand at 2512.642 kb on - strand at 2512.642 kb on - strand at 2512.642 kb on - strand at 2512.657 kb on - strand at 2512.699 kb on + strand at 2512.699 kb on + strand at 2512.707 kb on - strand at 2512.718 kb on - strand, within MPMX20_02383 at 2512.841 kb on + strand, within MPMX20_02383 at 2512.849 kb on - strand, within MPMX20_02383 at 2512.858 kb on + strand, within MPMX20_02383 at 2512.858 kb on + strand, within MPMX20_02383 at 2512.858 kb on + strand, within MPMX20_02383 at 2512.859 kb on - strand, within MPMX20_02383 at 2512.866 kb on - strand, within MPMX20_02383 at 2512.931 kb on + strand, within MPMX20_02383 at 2513.016 kb on + strand, within MPMX20_02383 at 2513.029 kb on + strand, within MPMX20_02383 at 2513.058 kb on - strand, within MPMX20_02383 at 2513.080 kb on + strand, within MPMX20_02383 at 2513.101 kb on - strand, within MPMX20_02383 at 2513.170 kb on + strand, within MPMX20_02383 at 2513.178 kb on - strand, within MPMX20_02383 at 2513.178 kb on - strand, within MPMX20_02383 at 2513.195 kb on + strand, within MPMX20_02383 at 2513.202 kb on + strand, within MPMX20_02383 at 2513.225 kb on - strand, within MPMX20_02383 at 2513.225 kb on - strand, within MPMX20_02383 at 2513.261 kb on + strand, within MPMX20_02383 at 2513.290 kb on - strand, within MPMX20_02383 at 2513.291 kb on - strand, within MPMX20_02383 at 2513.426 kb on - strand, within MPMX20_02383 at 2513.426 kb on - strand, within MPMX20_02383 at 2513.426 kb on - strand, within MPMX20_02383 at 2513.487 kb on - strand, within MPMX20_02383 at 2513.487 kb on - strand, within MPMX20_02383 at 2513.502 kb on + strand, within MPMX20_02383
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 2,511,076 - MPMX20_02381 0.15 -1.1 2,511,129 - MPMX20_02381 0.20 +0.1 2,511,136 - MPMX20_02381 0.21 +2.1 2,511,173 + MPMX20_02381 0.24 +1.5 2,511,288 + MPMX20_02381 0.35 -0.2 2,511,319 + MPMX20_02381 0.38 +1.0 2,511,321 + MPMX20_02381 0.38 +1.1 2,511,327 - MPMX20_02381 0.39 -3.5 2,511,340 + MPMX20_02381 0.40 -0.5 2,511,415 - MPMX20_02381 0.47 -2.1 2,511,420 - MPMX20_02381 0.47 +1.6 2,511,422 + MPMX20_02381 0.47 +0.2 2,511,430 - MPMX20_02381 0.48 +0.1 2,511,435 - MPMX20_02381 0.49 -2.4 2,511,477 + MPMX20_02381 0.53 -1.1 2,511,477 + MPMX20_02381 0.53 +2.5 2,511,487 + MPMX20_02381 0.54 -0.0 2,511,495 - MPMX20_02381 0.54 -1.8 2,511,495 - MPMX20_02381 0.54 -2.8 2,511,519 - MPMX20_02381 0.57 +1.1 2,511,529 - MPMX20_02381 0.57 +2.1 2,511,585 - MPMX20_02381 0.63 -2.5 2,511,612 - MPMX20_02381 0.65 -1.4 2,511,646 + MPMX20_02381 0.68 +0.1 2,511,668 - MPMX20_02381 0.70 -0.5 2,511,721 - MPMX20_02381 0.75 -0.7 2,511,729 - MPMX20_02381 0.76 +2.3 2,511,735 + MPMX20_02381 0.77 -4.0 2,511,791 + MPMX20_02381 0.82 +1.6 2,511,859 - MPMX20_02381 0.88 +1.4 2,511,871 + MPMX20_02381 0.89 -0.9 2,512,089 - -0.3 2,512,096 + +0.1 2,512,145 + MPMX20_02382 0.17 +3.8 2,512,147 + MPMX20_02382 0.18 -3.3 2,512,147 + MPMX20_02382 0.18 -3.0 2,512,147 + MPMX20_02382 0.18 +1.2 2,512,211 - MPMX20_02382 0.32 -0.5 2,512,234 - MPMX20_02382 0.37 +1.7 2,512,311 + MPMX20_02382 0.54 +0.8 2,512,355 + MPMX20_02382 0.63 +1.1 2,512,398 + MPMX20_02382 0.73 -3.5 2,512,526 - -0.5 2,512,634 + -1.9 2,512,634 + -1.1 2,512,634 + +1.1 2,512,634 + -3.0 2,512,634 + +0.8 2,512,634 + -0.5 2,512,634 + -1.1 2,512,642 - +2.5 2,512,642 - +0.5 2,512,642 - +1.6 2,512,657 - -1.1 2,512,699 + +1.7 2,512,699 + +2.1 2,512,707 - +1.6 2,512,718 - MPMX20_02383 0.10 +0.5 2,512,841 + MPMX20_02383 0.19 +0.4 2,512,849 - MPMX20_02383 0.19 +0.4 2,512,858 + MPMX20_02383 0.20 +1.4 2,512,858 + MPMX20_02383 0.20 -1.4 2,512,858 + MPMX20_02383 0.20 -4.2 2,512,859 - MPMX20_02383 0.20 +1.0 2,512,866 - MPMX20_02383 0.20 -4.2 2,512,931 + MPMX20_02383 0.25 -1.1 2,513,016 + MPMX20_02383 0.31 +2.1 2,513,029 + MPMX20_02383 0.31 +1.7 2,513,058 - MPMX20_02383 0.33 +2.4 2,513,080 + MPMX20_02383 0.35 -0.9 2,513,101 - MPMX20_02383 0.36 -1.1 2,513,170 + MPMX20_02383 0.41 -1.5 2,513,178 - MPMX20_02383 0.41 -2.5 2,513,178 - MPMX20_02383 0.41 -0.5 2,513,195 + MPMX20_02383 0.43 -2.5 2,513,202 + MPMX20_02383 0.43 -2.8 2,513,225 - MPMX20_02383 0.45 -2.2 2,513,225 - MPMX20_02383 0.45 -2.6 2,513,261 + MPMX20_02383 0.47 +2.0 2,513,290 - MPMX20_02383 0.49 -2.1 2,513,291 - MPMX20_02383 0.49 +0.6 2,513,426 - MPMX20_02383 0.58 +0.7 2,513,426 - MPMX20_02383 0.58 +1.8 2,513,426 - MPMX20_02383 0.58 -2.1 2,513,487 - MPMX20_02383 0.62 +1.7 2,513,487 - MPMX20_02383 0.62 -1.3 2,513,502 + MPMX20_02383 0.63 +2.6
Or see this region's nucleotide sequence